| Gene ID | Annotation |
|---|---|
| Am04G007410.1 | Methylthiotransferase |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am04G007410.1 | mRNA | Chr04 | 20393985 | 20399686 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF04055.24 | Radical_SAM | 272 | 467 | 2.30E-35 |
| PF00919.23 | UPF0004 | 112 | 224 | 4.40E-30 |
| PF01938.23 | TRAM | 524 | 598 | 9.20E-14 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0005739 | mitochondrion | Cellular Component |
| GO:0051539 | 4 iron, 4 sulfur cluster binding | Molecular Function |
| GO:0046872 | metal ion binding | Molecular Function |
| GO:0005829 | cytosol | Cellular Component |
| GO:0140096 | catalytic activity, acting on a protein | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR006463 | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB |
| IPR002792 | TRAM domain |
| IPR023404 | Radical SAM, alpha/beta horseshoe |
| IPR007197 | Radical SAM |
| IPR038135 | Methylthiotransferase, N-terminal domain superfamily |
| IPR013848 | Methylthiotransferase, N-terminal |
| IPR020612 | Methylthiotransferase, conserved site |
| IPR005839 | Methylthiotransferase |
| IPR006638 | Elp3/MiaA/NifB-like, radical SAM core domain |
| trEMBL term | Description |
|---|---|
| A0A8B8LVZ9 | _ |
| SwissProt term | Description |
|---|---|
| CK5P1_ARATH | CDK5RAP1-like protein |
| KO | Description | Enzyme |
|---|---|---|
| K06168 | tRNA-2-methylthio-N6-dimethylallyladenosine synthase | [EC: 2.8.4.3] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G36390 | Methylthiotransferase |
| Medicago sativa L. | MsG0580025034.01.T01 | _ |
| Oryza sativa L. | LOC_Os11g38030.1 | CDK5RAP1, putative, expressed |
| Cucumis sativus L. | Csa007955 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000134s00009789.1 | _ |
| Codonopsis lanceolata | Cl_chr03_29460T | _ |
| Arachis hypogaea L. | AH15G03830.1 | CDK5RAP1-like protein like |