Gene detail

Detail information of Am04G006860.1 Annotation

Gene ID	Annotation
Am04G006860.1	Vacuolar sorting protein 39

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G006860.1	mRNA	Chr04	18826944	18833367	+

Sequences

CDS:

>Am04G006860.1
ATGGTACACAGCGCTTACGATTGTCTGGAACTGGTTCGCGATATCCCTTGGAAGATCGACGCGATCGAATCCTACGGTTCGAAGCTCCTAATCGGTTGCTCCGATGGATCGCTTCGAATTTACGCGCCGGAAACTGAACCCTCCGATCGGTCGAAACCTTATGTGCTCGAGAAAAACCTTGTCGGATTTGCGAAGAGGCCAGTTGTCTCAATGGAAGTGGTTGAATCCAGGGAACTCCTTCTATCGCTTTCCGAATCCATCGCCTTCCACAGACTCCCTACTTTGGAAACCATAGCAGTTATCACGAAAGCTAAAGGTGCTAACGTCTTTTGCTGGGACGATCGAAGAGGCTTCCTTTGCTTCGCGAGACAAAAGCGCGTCTGCATTTTCAGACACGACGGTGGTAGAGGATTTGTGGAGGTGAAAGAGTTTGGTGTACCGGACGTGGTGAAGTCCATGTGTTGGTGTGGGGAGAATATATGTTTGGGGATTAGGAGAGAATATGTGATTTTGAATACTACAAATGGTGCTTTGTCTGAGGTATTTACTTCTGGGAGACTAGCGCCGCCTTTAGTAGTTTCTCTTCCCTCTGGAGAGCTTCTTCTTGGGAAGGAGAACATTTGGGTCTTTGTGGACCAAAATGGGAAACTTCTTCATGAAGGTAGGATTTGTTGGTCAGAGGCCCCTGTGGAAGTTGTGATTCAGAAGCCGTATGCTATAGCATTGCTGCCCAGATTCGTTGAGATTCGATCTCTCCGCAATCCTTATCCACTAATACAAACTATTGTTCTTCGTAACGTTCGCCATCTATGCCAAAACAATAATTCTGTGATACTTGCTTTGGATAATTCTATTCATGGCCTCTTCCCTGTTCCTCTTGGAGCCCAGATTGTCCAATTAACGGCTTCTGGAAACTTTGAAGAGGCCTTGTCATTGTGCAAGCTTCTTCCACCTGAAGAATCAAGTCTCCGTGCTGCAAAGGAGGGATCAATTCACATAAGATATGCCCACTATCTTTTTGACAATGGGAGCTATGAGGAGGCTATGGAACATTTTCTGGCATCTCAAGTAGATATAACTTATGTACTTTCTCTTTATCCATCTGTTATCCTTCCAAAGACGAATATTGTTCATGAGCCAGAGAAGTTGGATATTTATGGGGATGCTTCCCAATCCAATCTCTTCAGAGGTTCTTCAGGTGTGTCAGATGATATGGAACCCTCATCAACATTTCATATGTCAGAGTCAGATGAGAATGCAGCACTTGAATCCAAAAAGATGAACCATAATGTGCTTATGGCTCTTATAAAATATTTACAAAAGAAGAGAAGTAGTGTTATTGAGAAGGCCACTGCAGAGGGAACTGAAGAAGTTGTTTTAGATGCAGTTGGGAATAACTTTGCATCCTACAATAGGATTAAGAAAACAAACAAGGGCCGTGGTAATATATCTGTTGGTTCAGAAGCTAGGGAGATGGCTTCAATGTTAGATACTGCTCTACTCCAAGCGTTGCTTCTTACTGGGCAATCGTCAGCGACTTTAGAATTACTGAGAGGTGTTAACTACTGTGATTTGAAAATATCTGAAGAAATACTTCGAAAAGGAAACCATAATGTTGGTTTATTAGAACTTTACAAATGCAACTCGTTGCACCGGCAAGCTCTTGAACTTCTTCAGAAGTTGGTGGAAGAGTCGAGATCCAGCCGGTCTGAAATGACACAAAGGTTCAAGCCTGAGGACATTGTTGAGTATCTCAAGCCGCTATGTGGGACAGACCCCATACTTGTTCTAGAGTTCTCAATGCTTGTTCTTGAAAGCTGTCCATCCCAAACTATTGAGCTCTTTCTGTCCGGAAATATTCCAGCAGATATGGTCAACTCATATTTGAAGCAGCATTCTCCAAACATGCAAGCTAGGTACTTGGAGCTCATGCTTGCAATGAATGAGAATGCCATCTCTGGCAATTTGCAAAATGAAATGGTAAACATCTATCTATCTGAAGTACTTGATTGGCATGCCGATTTAAGTGCTCAACAAAATTGGGACGAGAAAGCTTATTCCCCAACTAGGAAAAAGTTATTGTCTGCTTTAGAAGGTATATCAGGATACAATCCAGAGACTCTGCTGAAACGTCTTCCACCAGATGCTTTATATGAAGAGCGTGCAATATTGTTGGGAAAAATGAACCAACATGAGCTGGCGTTATCTTTGTATGTTCATAAGCTTCATGTTCCAGAATCGGCGTTGTCTTATTGTGATCGGGTGTACGAGTCTACACATCAGCCATCTGTAAAATATTCCAGCAACATATACTTATTGCTTCTGCAAATCTATTTGAATCCTCAAAGGACCACATCAAGCTTTGAAAAGAGAATTACAAATCTTTTATCTCCGCAGAATACACCTATTTCTAAAGTTGGTGTAACAACATCTGTAAAAAGTAGAGGAGGCCGAGGATCAAAGAAAATTGCTGAGATAGAGGGTGCAGAGGACACAAAAGTTAGTTTGAGCAGCACTGACAGTAGCAAAAGTGATGGCGATGTGGATGAACTTAGTGAGGATGGTTCTACTATCATGCTTGATGAGGTCCTTGATTTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAGGCCCTTAAACTTTTACCAAGAGAGACCAAGTTACAGGATTTGCTTTCATTTCTTGGACCCCTTTTGAGGAAATCTAGTGAAATGTACCGTAACTGTTCAGTGATCAAGAGCTTGAGACAGAGCGAGAACCTTCAGGTGAAAGATGAGCTCTATAATCAAAGGAAAGCAGTTGTGAAGATAGCCAGCGATAGCATGTGTTCTCTGTGCCATAAGAAAATAGGGACTAGTGTTTTTGCTGTCTACCCCAACGGGAGCACTCTTGTGCACTTCGTCTGTTTTAAAGATTCTCAAAATATGAAAGCAGTGGCAAAAGGGTCTCAATTAAGGAAGCGATTATCAAACTGA

Protein:

>Am04G006860.1
MVHSAYDCLELVRDIPWKIDAIESYGSKLLIGCSDGSLRIYAPETEPSDRSKPYVLEKNLVGFAKRPVVSMEVVESRELLLSLSESIAFHRLPTLETIAVITKAKGANVFCWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVPDVVKSMCWCGENICLGIRREYVILNTTNGALSEVFTSGRLAPPLVVSLPSGELLLGKENIWVFVDQNGKLLHEGRICWSEAPVEVVIQKPYAIALLPRFVEIRSLRNPYPLIQTIVLRNVRHLCQNNNSVILALDNSIHGLFPVPLGAQIVQLTASGNFEEALSLCKLLPPEESSLRAAKEGSIHIRYAHYLFDNGSYEEAMEHFLASQVDITYVLSLYPSVILPKTNIVHEPEKLDIYGDASQSNLFRGSSGVSDDMEPSSTFHMSESDENAALESKKMNHNVLMALIKYLQKKRSSVIEKATAEGTEEVVLDAVGNNFASYNRIKKTNKGRGNISVGSEAREMASMLDTALLQALLLTGQSSATLELLRGVNYCDLKISEEILRKGNHNVGLLELYKCNSLHRQALELLQKLVEESRSSRSEMTQRFKPEDIVEYLKPLCGTDPILVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQARYLELMLAMNENAISGNLQNEMVNIYLSEVLDWHADLSAQQNWDEKAYSPTRKKLLSALEGISGYNPETLLKRLPPDALYEERAILLGKMNQHELALSLYVHKLHVPESALSYCDRVYESTHQPSVKYSSNIYLLLLQIYLNPQRTTSSFEKRITNLLSPQNTPISKVGVTTSVKSRGGRGSKKIAEIEGAEDTKVSLSSTDSSKSDGDVDELSEDGSTIMLDEVLDLLSRRWDRINGAQALKLLPRETKLQDLLSFLGPLLRKSSEMYRNCSVIKSLRQSENLQVKDELYNQRKAVVKIASDSMCSLCHKKIGTSVFAVYPNGSTLVHFVCFKDSQNMKAVAKGSQLRKRLSN*

Promoter(3k):

>AM04G006860.1
TATATATATATATATATATATATATATATATATATATATATGCTTATAAATTTATTTATTGGCAATCTTCCAGATTCACTACATAGAGAAGATGGGACCAGAAAGTCCTTTCTCTAGAGGTTCGACGATGCCCACACTAAAAGAGTGGGACACTACAAGGGTGCTAAAGGATATGGACACAATTAATAAAATTTGTGGTTATGGACGTGGCATAACATCTGGTTATGCTCTAAGCCCACAAATTAGCTTAGATAGTCCTATTTGCTCACTAATTCCTTTGGAACCCGATGAGTGCCCATTAAATAAGGTTTGTTTATATGTCATAATTATCTCTTTTAACTTTTGTATGGCATTAACAATCTTATGCAACTAACCACAAAATTACAGCTATGCACAAAAACTGGTAAGATGCCAATAACCACGAATATACAAATTTGTGGTTAGTGACCACTAACCAGTGTTGTGCATATTTGTGGTTAGTGGAATATTTGCAAAACAATGGCTAGATTTCAATAACAACATATTCACAAAATCACAAAATGTGTACTAATCACAGAATGTTTTCATTTATTTGGTGTTGTAGGTTCCGGAGTACTTAGAATATTGTAAATACCAACTTGGAGCATTCAAGAGATGCATTAAAAGTTTGAAGGAGAGAGTTGATGATGGTGCTGATGATGAAGACGATGAGGTTGATGATGAATTAATCCTAAAATTTGAAGTAATAGTTGTTGAGAAGCTATATTTAGTGACAAGTAATCGTTATGGAAATCTGTGCCATCTAGAAAGTATTAACCACAATTGTACTAATCTGTGGTTAGTGGCCACTAACCACAGAACAGTACCCCAATGGTTAGTGGCCACTAACCGCAGATATGCACAACACTGGTTAGTGGCCACTAACCACAGATTACTATTAAAATGGTTAAAATCTGATTGCATCAACAGAGAAAATTACAAAATGACAACAGAGACCAACACAACATTACAACAGAGAAATCCAAAATCACAACAGAAAAATTACAAAATTACAAAATAACTGAGAACAACACATTAACAAAGAAATCCAAAATAACAACATGAAGTAAACGTGAAATCTGATTGCATCAACATGAATTAATCCTGAAATCTGAAGTAATAGTTATTGAGAAGCTATATTGTTAGTGACAAGTAATCGTTATGGAAATCTGTGCCATCTAGAAAGTATTAACCACAATTGTACTAATCTGTGGTTAGTGGCCACTAACCACAGAACAGTACCCCAATGGTTAGTGGCCACTAACCGCAGATATGCACAACACTGGTTAGTGGCCACTAACCACAGATTAGTATTAAAATGGTTAAAATCTGATTGCATCAACAGAGAAAAATTACAAAATGACAACAGAGACCAACACAACATTACAACAGAGAAATCCAAAATCACAACAGAGAAAAATTACAAAATTACAAAATAACTGAGAACAACACATTAACAGAGAAATCCAAAATAACAACATGAAGTAAACGTGAAATCTGATTGCATCAACATGAATTAATCCTGAAATCTGAAGTAATAGTTATTGAGAAGCTATATTGTTAGTGACAAGTAATCGTTATGGAAATCTGTGCCATCTAGAAAGTATTAACCACAATTGTACTAATCTGTGGTTAGTGGCCACTAACCACAGAACAGTACCCCAATGGTTAGTGGCCACTAACCGCAGATATGCACAACACTGGTTAGTGGCCACTAACCACAGATTAGTATTAAAATGGTTAAAATCTGATTGCAACAACAGAGAAAAATTACAAAGCAACAATTGACTTACGCGCAAGTAAACGTGAGAAGCTGATTGATTCACCATGTTCTTCAACACCAAGCATTTTTAAAATCTGCAGAAAACAACTTCAAGGAATTTACCAAATGAAAGTTAAGAGTGAAGCGCTACTGGAAATTTAAATAACCAGATGATCAAACAACATCATAAATGTTAAGAGTGATCATAATCTTTACCAAATGAATGAAGCGCTACTGGGAATTGAAATAACCAGATGAATGAAGCGCTACTGGGAGAGGGAGAGAGAGAGAGAGAGGGAGAGAGAGAAGAAAGGGAAGACAGAACGACGGAGGAAGGGGACGGCGTCGGTGACGGTGAGAGAGGGAAAACGTGGTGGTTGCCGTGGATGGTGCGCGCGAAGAAGGAAGAAGGTGGTTGCAGGTCGTTGCAGGAAGTGATGCGATGGAAGTCTGCTGTGTAAAATGACAAAACTGCCCTCTTTAAGTGACAACCCTTAGATCATATTTCATTAAAATTAGAGGCATCCAACGGCTCAGTATAATTTAGTAAAAAATACTAAGGATCTGATTTAGTACCCTAAACCACTCTCCATTGAAACATAACTCCACAACCTAAACAACAAACAACAATATTAAAGCACGACTCTTACGGCCTAAGCGTCAAACGGCAAACAACAACATCAAAACATGTCATAGTACCACTAGTTACACTAACATGGAAAATATATTAGATTTACTTAAGATTTATTTTAAGAGTTTAAATGTCTCACGCATTGTCGGTGTAAAACTTTTTTATACCGTCTACCAATCACAAATCACAATATAAATGACTTATAATATAGTTTGGAAAAAACTCAACCATTTTTAATGACGTGACAAATTATAATTTGTTAACTAGGTAAACAATATTTAAACATATTAATTAAATCCTTTCCTTAAAGATAAGTTTATATAAATTAAATATTTTTTATAGAGACAAAATGGTCCCGTAGCTCAGATTAGACGTATAACAAAATATATAATAACAAATATGGTCCCGTAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCCGGGACCATTTTGCAAATTTTATTTCATATTTTTTTAATTTTTTTGACAATTTTATTTTATTTTTTCATTTGAAGTCGCCGTTTTGGTTTCAACGAGTAAGCTTGGAGTCCATGAAAGTAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF10367.12	Vps39_2	864	972	2.40E-33
PF00780.25	CNH	26	272	2.20E-27
PF10366.12	Vps39_1	496	604	9.40E-26
PF00637.23	Clathrin	624	754	8.40E-11

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006914	autophagy	Biological Process
GO:0099023	vesicle tethering complex	Cellular Component
GO:0006886	intracellular protein transport	Biological Process
GO:0043231	intracellular membrane-bounded organelle	Cellular Component
GO:0007033	vacuole organization	Biological Process

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR032914	Vam6/VPS39/TRAP1 family
IPR019453	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
IPR019452	Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat
IPR001180	Citron homology (CNH) domain

trEMBL

trEMBL term	Description
A0A8B8JT62	_

SwissProt

SwissProt term	Description
VPS39_ARATH	Vacuolar sorting protein 39

KEGG

KO	Description	Enzyme
K20183	Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G36630	Vacuolar sorting protein 39
Medicago sativa L.	MsG0580024960.01.T01	_
Oryza sativa L.	LOC_Os09g25860.1	expressed protein
Cucumis sativus L.	Csa019563	_
Glycyrrhiza uralensis Fisch.	Glyur000079s00008946.1	_
Codonopsis lanceolata	Cl_chr03_20020T	_
Arachis hypogaea L.	AH05G06960.1	Vam6/Vps39-like protein like

Expression pattern