Gene detail

Detail information of Am04G006650.1 Annotation

Gene ID	Annotation
Am04G006650.1	GRAS family transcription factor

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G006650.1	mRNA	Chr04	17976732	17979162	-

Sequences

CDS:

>Am04G006650.1
ATGACAGATCATGCCTTGCATAATTTGGATTGGGATTCCATCATGAACGACCTTGGGGGCTTGCAAGAAGACACCACCAACAATCCTTCCCACCTCCCTCTCCCTAACCCCGAATTCACACCCTTCGATGATCACACCGCAGAATTCACTACTCTCTCCGACACATACTCTTCCAACAACCAAAATTCCATTTACAACTACAACTACACCAACATCAACGGCTTTGATTTCATCGAAGACCTTATCCGCGCTGCTGATTGCTTCGACAACAACCAGTTACAACTCTCACACGTGATATTAGACCGGCTCAATCAACGGCTACCATCTCCCATCGGAAAACCGCTTCAGCGAGCCGCGTTTTACTTCAAAGAGGCTCTTCAGTCCCTTCTCTCCGGTTCGAACCGGACGCCGAAGCTTTCTTCCTTGGTTGAAATAGTTCACAGTATCAGAACCTTCAAGGCCTTCTCTGGAATTTCCCCTATTCCAATGTTCTCTATCTTCACTACTAATCAAGCACTCCTTGAAGCGTTTCACGGCTCCTCTTTTATGCATGTAATCGACTTCGATATTGGTCTCGGGATTCAATACGCTTCTCTCATGAAGGAGATTGCGGAGAAAGTAGATTCCTCTTCGCTCCTTCGAATCACTGCCGTCGTTTCCGAAGAGTACGCTCTCGAGAGCACGCTCGTTCAAGAGAATCTCACGCAATTCGCTCACGAACTTGGGATTCGAATACAGGTTGATTTTATGCTTCTTCGAACCTTTGAGTCGCTCTCCTTCAAGGCAGTTAAGTTCTTCGACGGAGAGAAAACTGCCGTTCTGTTGTCTCCGGCAATATTCCGCCGGTTGGTTTCCCCCGCGAATACCGCTGCGTTCTTAGAGGATGTCCGGAGTGTCTCGCCTAGCGTGGTGGTTTTTGTAGACGGGGAAGGTTGGGCGGATGCTGTGGCAGCGGCATCTTTCCGTCGCGGCGTGGTGAGTAGCCTGGAGTTCTACGCGATGATGTTGGAGTCGCTGGATGCGTCGGTGGTTGGGGGAGGAGGAGAATGGGTGGGGAAAATTGAGATGTTGCATTTGCGGCAGAAGATACTGGCTGCCGTGGAAGGTTGCGGACAGCGGATGTCGCCGTGGAGAGAGGCGTTTTACGGTGCTGGCATGAGGCCGGTTCAGTTGAGCCAGTTCGCGGATTTTCAAGCGGAGTGTTTGTTGGCCAAGTCACAAATTAGGGGATTCCACGTGGCCAAACGCCAGGCTGAGCTGGTGCTCTTCTGGAACGAGCGAGCCATGGTTGCCACGTCAGCTTGGCGATGTTAG

Protein:

Promoter(3k):

>AM04G006650.1
TGCAATCCAATTTTATGTGCATATTGTCTTGTTCTTTGTTTCGAAGCCATAATTCAATCTCTCCCAAAGAGCAACAACTTCTACAACTTTTGGGCAAGTGCCATTTAATCACATTGATTTAGCTTTCTCGAAGGCACCTAACGCATCCCTTATACAACACGTCATGTCGTTTTCAGATACAAAGACAACAACATCAATATTGCATTTTAACGATCCCACAGCAGGTGCGATCCAAGACTTGGTAATCGAGAATTCGTTAAAAAAAGTTAATGAAGCTCACATTAAACTCCATCATATGGTAGATTTATTAAAATAAGATAACCAAAATAATAATTTCTAAAATAGCACTAGTGCACGAAACTACTTTTTAAGTCCGATATCTGAACACTCGACTTTAAAAGTCTAATTTTTTTTCTTGATTTTGCACTAGTGTAGATTTACTTTATTTTATTGACATTTTTCTTCTAAAATAATAAAATATAAACCTCTTTATGTTATTATGTAGAAAAAAATTAAATTAGTCAAAAACAAAAATAACTAAAAAACGATAAATAATATGAATAAAAAACCCATGTGTTATATCGTGATTGAAAAATAACACTATGAACATCAATAGAATTGCATTTAAGTTTTCTCCAATTATAAATTACCCAACAATAATGTGAGAATACTTTATTTTGTTCCGCATTACCCATTTTTTCCTCTCAAATTCCATTTGATTTAATATCAACACACCTAAAATTGGGTTAGAGGATTTAATGAGGAAAAGGTAGATTTGAAAAGAAAGGTGACAGAAAACCCCCTAATTAAGATGACACGAAAACCTTAATTGTGCATTGTCTATCATTGATAGACAGTGATTGTTGGAGCTTCACTTCGATGAAAAAGAACAAGGGTAGTCCAAAATGCCTCTAAATATGTTTTGTTTCACGATGTTAGATGATATGAGGTGGATAAAAGACGACGAGTTAACAAGTAGGGCAAGCAAAGCGGGTCGACTAGACCTGATTTGTCGTGAGCCTATCAAAAATTTGACCAGGCAAAGTGGCCCGCCAAAAAATAGTGGGTTGACCATGTGAAATAGAGTTTGCACCACCTCTCGGTGGACTAGCTCGCCATTAAAATAAATAAATAAAAATGTAATTAAATCATATTTTGAGCTTAAAATATGCGTATTGACCGGCCAAAAACAAAGTAAAATTGGTGGATTGGTGTGTTGGCCCACTACAATCCGTCAACAATAAATTTAAAAATATTCAAAATAGTTAAAAATAAAGAGATACAATATAAAATAAAAAAATATAAATTTGACGGGCTAAACTACAATGGGTTTGGTTGGCGGGGTGAGAACACCAACACGCACAAATCTGTAGTTGTTATGTAGGAATTATTGAGAGAAACTCAAGTTCCACATCGACTAGTGATAAGGTCTCAAAAGAGTATATAATGAAAGAGCAACCCTCATCTTACAAGGCAGTTTTGTAGGGTTGAGTTAGGCCCAAACCACATTCTAAGATGGTATCAGAGTCTATCCTAGATCCATCGGGCCACCCACCATTATTATCCACGCACCAAGCCTAATAGTGCTGGGTGTGAGAGGTGTATTGGGAGAAACCCAATCCCACATTAATTGACTAGTGATAAGCTCTTAAAAGAGTATATAATGAAAGGACAACTCTCACATTACAAGTCGGTTTTGTAGCTGAGTTAGGCTCAAAGCACATCTTGATCTTGTTGTCGCTCTAGTAGCAGAGAAATGAGAGTGTACCTTTTTCAGCTAGGTGGGCCCAATAGCGGACCTACATACAGTTCAGAACTGAACCCCCTGAAAAAATAAATTTAGCACCGATACCTTAGGAAAAAATGTTTTTGCACACCGTGAAAAATATCTTTTGCACCCAAGTTCTTAATTTTGCACCAAAGCCCTTAGTTTTGCACCACACACACAATCACTCACCCCGAAAAATATCTTTTAATGTTATTTAATTGGTAATTTGTTTTAGTGCTATTTAATTAATGTGTATTTTGTGTTAGTTTATTTAATTTGAATTAGTTCTTGTATTTTGTGAATATGTTGGTTCTCTTAGTGCTATTTAATTTGTATTTAGGAATTTGTTAGTGCTACAGGCAATGTTAGTGGGGGAGAGAGGAATGTTAGATTCGTGAGTTTGAATCCGGGACCTCCTGCTTGCAGGCCTTTGGCGCACTCTTTCAATATCTTAGTCTTAGCTAAGCTCACCAACTAACTACCTACTTGGGATACTTGTTAGTGCTATTTAATTTGTGTTGATCACGTGTAACACAAATTGTGAACCTGTTATAATCTTACTTTTATTATATTTTTTGCAATATGAGTGTTTGAAAAATTTTGGACCCCCTAACCCAAGGTCTTGGGTCCGCCAGTGGGTGGGCTCGTATTTATAGGCATTGTACAACCGTTGAATTGATTCGATGAATTTGAGCGGTTAATGTATGGTGGTCGTAAGTGAGCTGAATTATATTGAATATGGAACCTGGCTTGATGGCGGCCCCGACCAGAACACATCCTGAGAGGAATTGCTTTGCCTATTAACCATAAATTTTTTGCATGTGTTGTTGCGTAGTTTTCTTCTAGACTAACATCTTCTGTAGGTATACATGAATACATTACGAAAAGAAAAAAGCCACCTTTAAAGCCAAAGTTTGACGTGCTTGTGAGCGTTGAGTTTTGATCTTTAACCCAAAAAAGCAAAGAAAATAAAAGGCAACAAGACATGCTAGCTTGACTCATATAGTGATATAACCCACCCACAGTACAAATTTATAACAGTAACAATAGCTACACTTAGTTAATCCCATTCGCATATGATAAATTTATAACAATAGCTACACGCAAAGATAAATATAAAAGGCCCGCCCACAAACGATCATAACATTAACCTGAATCCCGGCCAAAGGAACAGAACAACTCCTCTGTTTATAGAAAACACAAATACGTATAACGCCAAAGTGGAGACGGTG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03514.17	GRAS	78	436	1.10E-85

Gene family

Gene family	Subfamily
Transcription Factors Family	GRAS

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0009610	response to symbiotic fungus	Biological Process
GO:0030154	cell differentiation	Biological Process

InterPro

InterPro term	Description
IPR005202	Transcription factor GRAS

trEMBL

trEMBL term	Description
A0A6P5NJH1	_

SwissProt

SwissProt term	Description
SCL15_ARATH	Scarecrow-like protein 15

KEGG

KO	Description	Enzyme
K27747	protein hairy meristem

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G36710	GRAS family transcription factor
Medicago sativa L.	MsG0780037985.01.T01	_
Oryza sativa L.	LOC_Os04g46860.1	scarecrow, putative, expressed
Cucumis sativus L.	Csa016176	_
Glycyrrhiza uralensis Fisch.	Glyur000079s00008916.1	_
Codonopsis lanceolata	Cl_chr01_09720T	_
Arachis hypogaea L.	AH15G02700.1	Scarecrow-like protein 15 like

Expression pattern