Gene detail

Detail information of Am04G006620.1 Annotation

Gene ID	Annotation
Am04G006620.1	homeobox protein 40

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G006620.1	mRNA	Chr04	17924066	17926928	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G006620.1
AACAAGAAAATAGCTTGGGTGAAGTGGGAAACAATTTGTCTACCAAAGGAGAAAGGGAGATTGGGTATAAAAAATCTCGAATTATTTAATGTTGCTCTATTAACAAAATGAAGATGGAGAGTCTTGTTGGAAGAGAATAATGCTATTTGGAAGGAGGTATTGGTAGAAAAATACGATCTTAAGGGAAGATGGCCCGATATGGTGGAGAGTAGAAGAGGGTGGGAGAAGAAATCGTTATGGTGGAGGGACCTGTGTTTACTTGGAGAGGATATAGGCTTGCAAGAAGAATGGTTCAGTCAATTGTTTAAAATTAAAGTCGGTAACGGTAATAAGGCGAGGTTTTGGAGGGATGTTTGGATGGGACGGGATCGGTTGAAGGACTTATTTCCAGATTTATTTAATTGTTGCAGGTCTAAGGAGGCTACGGTTGACGAGTTCGGACAATGGTCGGAGGCGGGATGGAGCTGGTCCATGAATTGGGCCGACGGTCTGCTGCAGAATTTTGCAGACCGTTCGGCTGAAGCTGCTGTTTTGCAGGAACTGCTGCAGCCTGTTGTGCTGGCAGCGTGCTCGGATAAATGGACTTGGGTGTCGGACGCATTAGGTGGCTTCACTGTGAAAAAATGTTATGAATCTTTGCTGAATTTTTCTGCAGGAGCAGCACATGTACAGCAGGTACAGCAGGCCGATTCAGTCTCAGCATGCAAGGAAATTTGGAAATGTGACGTTCCGTCCAAAATCCAAGTCTTCGCGTGGCGAGTAATGCTACAGCGGGTTGCTACTAGAGTCGCTCTGTATATGAGAGGGATAATCCAATCCCAAAATGATCTAAGCTGTGTATTATGCTTTCGGGAGGAGGAGACGGTGGATCATTTATTTATGTCTTGTGAAGTTGCAAGGAGTATATGGAGGAGTGTTCTCGGTTGGATGGGGCTTACGTTGGTCGACACGGATAATTTAATCAATCATTATTTGGAGTTCGGAAAGTTGGTTAGGGGAAATAGGCAAAGAGGGGTTAAACATCTTATATGGGTGGCGGTAATTTGGAATCTATGGATGGCGAGAAACAATGTCTTATTCAAAGGCGAGGTAGCTTCAACTCCAAAAATACTAGCGGGCATCAAGGACTCGGCGTGGTGCTGGTTCAAGGCAAGGAAGGGAAGAAACTATATGACAACATGGGCGGATTGGTTCCATTGCCTGACGGGCTGTTTTTCCATGTTGTAATTTACTATTTATACGGTTCGTAGACATTATGGAGGTTCATAGGGGGAGAAACAGTGGAGTGTGGTTTATTCTCTCCGCTGTGGCACATGTCTTGTGCAGGGTACTCTTTTTCCTGCCAGAGTCTTTTTCCCAATGGGTTTTGGCTCTGGGAGGTTTTAAGGAGGCCCTCCCCCTTTCCTTTCTCTCATTGTAAGGGCTGGGCACCCATTGTGCTCCCTTCATTGAAATCTTTAATTATCTAAAAAAAAAGTATGAAAATATTTTATGGTGCAAAGACCATATGTATTAGTATAACAGATTATTATATATTTTGTATATCTTATTATCTTTTTTCTTGGTGTTGTATTTGAGAGTGAAAGAAAGTAGCGCCGCCGCCGCTGGGAGGGCGGGGGGCTCCCTCCCCGGTTTCTTCCCCTCTCCTCTCAGTGCTCCTTCGCCCTGCTGTCGCTATTGGCTTCGGTCTGGTTGAGTCTGTTCTCTGCACTCCTTCTCTATGGATTCTGGATGTTATTAATAAAAACGGGTTGGGCGCTGCTTGGGTTGGAACCGCCGTTGTGGGCTCCCTTTCCTCGGATCTGATCTCCTCTGTGACGTCCACGGCCTCTCCCCCGAGGCGTTGATGGTCGGATCTCCCTATTGGTGGATCTGCGCGCTTTTGGAGGTACTATGGAGTGCTTCTGTTCGCACAGGGGTTGGTTCTGATGCGGTGTTTTGCGGTGTTTCGCGGTGGTTCACGGTGGTTTGTCTGATGTTCGCAATGGTGGCTGTCGTTTCGGACTTTGGACCCGCAGTCACGCCTCCTCTCCTTTTGTCGTGGGCACTTCTCCCTGTCGCTCGCGGTTTTGCTTGATTGTGCCACGGTGTTGGCCGGGGGCGCAAGGCCGCGGTGGTGGTTGGTGGCTCGGCTACCTCGATCAAGCTAGGTGTTGTCGCGGTGTTGGCCGGTAGCACGACTTCGCGATGGTGGCTGGAGTCCCGGCGCCGGATGTCTGGGGTGTGCTGTCGGTGGGTGCTGATTCGATAGTTTGTACCTTGTCGAACGCAAGATTGGAGTTTGCAGATCGCCGGGCTCCTCCCCCTTTGCCTTCTGCTTCTTTGCCCCCTCCCAATCGTCTCCGGGCCTCCACCTCTAACCTCGATGCTTTGTGATGTGCTTAATGTGAGGATAGCGAGGTGATGCAGGCTGTTGTGGTTTGGAGTGTGAGTTCAGGAGGTGGTGGGTGGAGGTTGTGTGGGGACTCTCAGGTGTTGCCCTGCCTTCTTTCGGGTTTTCTGTTCGCCTTAAAATTTCTTCCATTAGAGTTCTATGGTTGTTTATTTTAGAGGCCTTGTTGGGCGCAGTCTATTATTGTCCTTATTACCAATGGTTTTGGTCTAGTCCCCCCTTATGCTTTTTATATCTCTCTTTATTTTATTAATAAATTCGGACTGACTGCCTCTTTGATTAAAAAAAAATATTATCTTTTTTCTTAACAGTGTATATCATATGATCTACTGTACACGTTACATCCGTACACATTTTGTCGTTACAACCATTAAATAATAAAATTTGAAAAAAAAAATTAAGAAAGAAAGTAAGAATGGCACTGATGTGCAAATTTAAACACAAATTGGGGCAGTTTCTTAGAAAGCCCTCCACATATCCATCAACACATACGCATCATCTTCTCTATATATATATCTGGAAGGCTTATGTTGTCTCTCCAAAAACAAGAGAGAACCCAGCTAGTTAGATAGGAACAAGGTGAGAGTAACAACACGACACAACACACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00046.32	Homeodomain	55	108	8.80E-17

Gene family

Gene family	Subfamily
Transcription Factors Family	HB-WOX

Gene Ontology

GO term	Description	Category
GO:0045893	positive regulation of DNA-templated transcription	Biological Process
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process

InterPro

InterPro term	Description
IPR009057	Homeobox-like domain superfamily
IPR045224	Homeobox-leucine zipper protein, class I, plant
IPR017970	Homeobox, conserved site
IPR001356	Homeobox domain
IPR000047	Helix-turn-helix motif

trEMBL

trEMBL term	Description
A0A151TI40	_

SwissProt

SwissProt term	Description
ATB40_ARATH	Homeobox-leucine zipper protein ATHB-40

KEGG

KO	Description	Enzyme
K09338	homeobox-leucine zipper protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G36740	homeobox protein 40
Medicago sativa L.	MsG0580024936.01.T01	_
Oryza sativa L.	LOC_Os07g39320.1	homeobox domain containing protein, expressed
Cucumis sativus L.	Csa012211	_
Glycyrrhiza uralensis Fisch.	Glyur000079s00008908.1	_
Codonopsis lanceolata	Cl_chr03_20700T	_
Arachis hypogaea L.	AH05G06520.1	Homeobox-leucine zipper protein ATHB-40 like

Expression pattern