Gene detail

Detail information of Am04G006490.1 Annotation

Gene ID	Annotation
Am04G006490.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G006490.1	mRNA	Chr04	17565419	17566970	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G006490.1
GTTGGTTATGTTTTATCTTTTATCGCATGAATGAAATCGACATTTTAATGAAACTCCACAAATATAATAAACAAGAAATAATAAGAATCAAGTCATAAAAAATAGTTCAAGCATACAATCACACAAAACCCCTAGTCACGCCCCGGTAGCATATCCAGTAACCGCGTGAGGCGAGTGTATGTCTGACTACCCATCCTAATGTCTCCGCTCCGAAGCCCCCTCCGAATCTCCTCCTCCACAATCTCGAGCAAATCTGGCTGTAGTGGTGGTGGTGGTGGTGATGCAACCCGTAAGAGTCTAGGAATAGATGTTCTCACATACCAATGTAAGTAGTCCAGAGCAACCTGACCCAACTCCTTAGCAGGATAAGTAGTACGCAAAACCTCCTCCACCACAGGCATATAATGTGCAATACGAAAAATTCAATCTGCATGGCACGGACGACCAGTAAGAGGGTGACGTGGGATAACCTGCACGTACCCAAACTGTCTGAGGCACCTATCTGGCGTGTACGGAATAGTGATGTCCCCCCAGCTGATGTGTCCCCTGCACATGCTCAAAGTCTCTATCCTCACGGTGCTCCTCAAACGGTCGCCAGCAGACATCATTCGAGGCCAGCGCATCAATCCTCTGCCTGTATACCCCCAGCTTCACTCCATCCGTCTTCTTCTTCCTCCAACGCCCACACATTGCTCCAGCCCGCAATCCACTGCTCCTCTCCACTAGCTGAGGAAAATACCATAAAATCCAGCTCTGAAAAAAAAGAAGATAAACAACATGGTGAATTAAAAAGTGTTTAACAGAAATTTAACCAAACTCGGAAAAAATTAACTTAAAATTATTACCTGTAAGAGGGTCACATACCCTCCTAACTGATGCGCCTGGTCCAAGCAGGAGTAGTTCAGCTGGTCATACATGAAAGCAAGTGCTGCTACCCCCCATGCATATGATCCCACACCAGCTGCACTGACATCCTCAAGTAGCAGCAGCCACTTAGCCTCAACCCTGTCGCCGGTCTTGACTGTGAAGATGGACGAGCTGAGGATCAGAAGGATAAAGGCCCTGACAGCAGGACGCATGTCATTCTCTATGGACCCTCTACTAATAATCTCCTACAGCCACTCAAAACGGTAATATGGGCCAGATGAAGCTCGACACTCCCGCCCCGCCTCCTCCTTAGTCACACATAGATAAACATGTGCTAGGTGGATGGCCTGATCAGTGGTGACAGAAGTAGGTGGAGCTCTGTAGTAGTTCCCCGTAATTGGTAGATGCAGCAAACAAGAGACATCATCCAAAGTAATCGTCATTTCACCAAATGGTAAGTGAAAATGACGATGTCTCTGAGTGCCACCTCTCAAGAAAAGAAGACATCAGCTCATGGTCCACATTTGTATGTCCGGTCGAGACGAGGGGGCTAATCCGAAACTAGAGATAAAATCCCACAACCGGTGGTTTTGGGAAAACCCAAGCAGTCTCTGAGCCAGCTTGTTACCATGGTTGGTAACCTTCAATTTCCGCTCATATGTCTGTATTATAAAAGTATTAGAAATAAGGCTATGTAAATAAATTAAACTAAGAAGGCTACGTAAATAAATCAAACTTACTGGGTCTCCCAGTATAACGGTACACACATGAGATGCTAGCCCAGTGAATAGAGGAGGCTGCTACTCATGCTGCTGAGGCTGATGGTAGGGCTCCTCATGCTGCTGAGGCTGCTGCTGATAAAACTGCTGCTGGTAGTTCTTAGGCATAGAATGGTCCTCAGACATAGAATGCTCATCAAGAGGGTGCCCCTGCTGACCCTCCTCATAGTGATAGTATGGGGCCTCCTCCACCTACTGTCGACTACGCCGGGACGCATGTCCCGCAATCCTATGGCGGGTGCGTGTACTGGGAGCAGATGGCGAGGCCTGAGCCGATGACTCCCCTCGATAGCTATTGGACACTGGAGAAAAAAACAAATTCGTTAAAAAAAACACAAAATCGGATCTACCTATTTCCGATGCGAAATCGGATATATGTAGATACGATGGGAAATCGAATTTAGGTAGATCCGACTTACTATTTCTACTGACTCTGAGGAATATCGGATGTATGTAGATTCGATGGTAAATCCGATGGCAAATCGAAAATAGCTCTCTGAATGGTAAATCCGATTCTCTCAGGAAACTTTCTGGTCAAACAGATGCAAGTGAAAAATGGTAAATATTTTGTAAATTTGTAAAAATTTAAGGGTATTTTCGTCTTTTCAGAGAGTCTGTGGGGGGGGGGGGGGGGGATATAGTGATATGATGGGGGTAAAAGAAAATCCAAATCAAAACTCAATTGTATCTTTCTCAGGCTGGACGCCTAGAGGCCCAGACCCTCAAGATGTGTCGGTAAAAACGAGCCTGTTCACGTTTAAAAAAGTCGAAATGGAGCTTGACAAAAAGAAAAGAACGAGAAGTAAAGTCATCGTTTCAGAAAAAGAAGACGTGAACGAGCAAGTGGCCAAGAATTCCAGAAAAAATCTGGAAACTTCCACAAGGTTTTCGGCGACAACCAAATTTAGGGCTTTTCACTTCAGAATTTAGCCAAAAAAATTTCTGTCTTCTCCTACCAATTGTCTTTCCCTCAGCCGAATCGTAAGTTTCTTTCTCAGATTCCTAATTTCCTAACTCCTTATCAATTCCTCAATTCACGCTTATAACTTTTTACCTTGGTTTTCTAAGATGAAATCCCTATCTATTTCTTTTTAATCTTTTATCTTTTCATCATGTTTTGTATTCGGTCGCTAGATTTATCGGTAGTTTCGTTGATTAAATAATTGTACATCATCGTGTTAATCGCTTATTTCCATTTTCTTTCGACCTTGTCGGTGACGACGGTGCGAAATTATCCTTGATTCGTTGTTTTGATTAATTAATTGATTTATTCCTTTTCGAATGAAATTGTAGGGTTTCGAATCTATAGTTGATATCGTTTGGTACATATCTGAAGATTTGAGGTTTAGACAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13923.9	zf-C3HC4_2	30	71	7.10E-09
PF13920.9	zf-C3HC4_3	29	76	1.20E-07
PF00097.28	zf-C3HC4	31	71	1.40E-07
PF13445.9	zf-RING_UBOX	31	65	2.60E-07
PF13639.9	zf-RING_2	30	72	3.00E-07
PF14634.9	zf-RING_5	30	72	1.10E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0044390	ubiquitin-like protein conjugating enzyme binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0036503	ERAD pathway	Biological Process
GO:0004839	ubiquitin activating enzyme activity	Molecular Function
GO:0016301	kinase activity	Molecular Function

InterPro

InterPro term	Description
IPR017907	Zinc finger, RING-type, conserved site
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like

trEMBL

trEMBL term	Description
A0AAN9SWW4	_

SwissProt

SwissProt term	Description
RNF5_CAEEL	E3 ubiquitin ligase rnf-5

KEGG

KO	Description	Enzyme
K10666	E3 ubiquitin-protein ligase RNF5/185	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G23780	RING/U-box superfamily protein
Medicago sativa L.	MsG0580024921.01.T01	_
Oryza sativa L.	LOC_Os12g43930.1	zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa010103	_
Glycyrrhiza uralensis Fisch.	Glyur000580s00024201.1	_
Codonopsis lanceolata	Cl_chr02_21630T	_
Arachis hypogaea L.	AH11G09000.2	RING finger protein 5 like

Expression pattern