Gene detail

Detail information of Am04G005840.1 Annotation

Gene ID	Annotation
Am04G005840.1	methionine aminopeptidase 1D

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G005840.1	mRNA	Chr04	15741874	15753349	+

Sequences

CDS:

>Am04G005840.1
ATGGCGAGTAGTATGTCACTGTTCAAGTCTTCTTTCACGGGAGATCGATTACTACGCTGCTCAAGGCAGCATCAGCATCTTCCTCATCTATTCCGTTACAACCCAGGAAACAAGCATGTTTCGATGCAGTTGTCTCGATCACTTTCTGGCTTGACCAATCTCTTATTTAATAGAAGGAATCTAGATGAAGTGTCGAACAGCAAGCGTAAACGTCTGAGACCTGGAATAGTTTCTCCGCGTCGAGAAGTGCCAAAGGACATACAGAGGCCTCCATATGTAAAATCTAAGGTTCCAGCAGGACTTGTGAGTGGACCTGAAGTGCATGACGAGAAAGGGATAGAATGCATGAGAGCTTCTGGAAGGCTTGCAGCACAGGTTCTTCAGTATGCTGGCTCCTTAGTCAAGCCAGGCATAACAACAGATGAAATTGACCAAGCAGTTCACCAAATGATAGTTGATAATGGTGCATACCCATCTCCTCTTGGCTATGGTGGTTTTCCAAAGAGTGTTTGCACATCTGTGAATGAATGCATTTGCCATGGAATACCAGATTCCCGTGTCCTTGAGGATGGTGATATAATCAACATTGATGTTACTGTTTATCTAAATGGCTATCATGGTGACACATCGGCAACTTTCTTTTGCGGAGATGTTGATGATGGGGCCAAAAAATTAGTTCAGGTTACTAAAGAATGCCTAGATAAAGCAATATCAATATGTGCACCAGGAGTGGAATTCAAGAAAATTGGCAAAACAATTCATGACCATGCAGATAAATATCGTTATGGAGTCGTGGAACAGTTTGTTGGCCATGGAGTTGGACGTGTTTTTCATGCTGATCCAGTTATTCTTCACTTCAGAAACAATGAAAGTGGACGGATGATGCTAAATCAAACCTTTACAATTGAACCAATGCTGACTATGGGTAGCATCAATCCTGTGATGTGGAAAGACAATTGGACAGTTGTAACAGAAGATGGAAGTCTTTCAGCTCAGTTTGAACATACCATTTTGATAACTTCTGATGGGGCTGAGATCATGACTCAGTGCTGA

Protein:

Promoter(3k):

>AM04G005840.1
CTATTTGTAGGCACACTTTAACTACTAACAACTCCATTATAACTACTAACAAACTTCCCTAACTACTTAACCAACTAACAACTCAATTATAACAACTAACAAACTTATCTAACTACTTCACCAACTAACTATATATCTAATAGCAACAATATTTGAAATTTTAAAAGGCATATCAAAAAAACCTAGCCCTCGCCTCAAAATGAATTGATCTTTCACCTTGACCAAGTTCATAAAATTTATTGGTTGCCCATTGTGTTTACATAATGGTTGAAATTTAATCTAGATTTTGATTACCATCAATTCCTAGCTGTTAGTGTCCTACCTTTTTGTAGATTCCTAAATCCACCCTTGGCGGAAGTGCTCGTAGATATGGTCTTCTCCTCATGCTTTTGAAGGAGATCGATTAATGAGAAAACAACATATCGAGTGAGAACGATTAATAAGAGAATAGATTGTTGAAGTTGCTTCATCCCAAAAATACTTTAATTGTCGGAAATTGATGGCGAAAACCTTTCAAATTCAAAATTGTATCTTACCAACAGCCTAGTCTAATCGATAACACACAAGAGATAGTTGGACAATTATGGATTCGGGCAACCTAGGCCGCTAGTAATGTAGCCCCCAAAACTCGTATTCGTCATTCTAGTTCTCGCGAGTTCCCTCATTCTCATCGCTCATCTCTTTTCCTCCTAATTTTTGACAAGAGGACATTTTCCTCTTTTAAGATTATAGATAGTTGAGAACGATGATGTTGTGTTTCTTGTACATAATGACCCAGTACCCACACTCCATTCAACCACCCCATATATCCCAAGCCAAACCCTCCCTATATCCCAAGCCAAAAACCCCATCACCTGACTCCCCCATACCCACACTTCATTCAACCACATACCACATACCACATATCCATCAAGTTCCTTCAGTAATTACGGTTGTGAAATAATTTTTTTTAGTTATAGGAACTTAAGTTATGGGGCTAATCCAAAATTTAGCTTCCATGATAATTTCAAAGTAAGCTTATAGTAAAAGGTAATATAAGTTAAAATTAACTTTCAAAAGGTAAAACAACAATTGAATAAGTAACTTTAAAATACAACACAAGTTCAAGAAAGTTATACTTCCGAAAGTTAAATTTACATTTGAAGGTATTTAAAAAAAAATTATGTTTGGTGTAGTTAGATAAATAGAGGTGCAAATAGTATCGCTCTTTGTTTGTTATTTGTTGAAAAATACAATCCGTTTTCATTCTTCATCAATAGGTGAGTCTCCCAAGATTGGGCTTTGGGCACGGTTCTGCGATTGTTGGGCCTAGCATGAAATATCAAGGAATTTAAGGTCACGTTTTTTGTACCCCACCAATAGACACCATACCCCCACCAGATACTTTTTTTCCCATTTTACCCTTGAATATTTGACAAAATGGATTTATCTAACAAATAGATAAATCCGTTATGTATGAAATGAACAACGGATTTATCTATTTGTTAGATAAATCCGTTGTTAAATATATAACTACGGATTTATGTTTTTAGTAGATAAATCCGTAGTTGAAAATCCGTAGTTATATATATTTAACAACGGATTTATCTACTAAAAACATAAAACCGTAGTTGAAAATATATAACTACAGATTTATCTACTAAAAACATAAAACCGTAGTTATATATTTAACAATGAATTTATCTAACAAATAGATAAATCCATTGTTCATTTCATACATAATGGATTTATCTATTTGTTAGATAAATCCGTTTTGCCAAATATTCAAAGTTAAAAAGGGAAATAAAGTATCTGGTGGGGGAATGGTGTCTATTGGTGGGGGTACAAAAAACGTGACCCTCTTTTTTATTCCACTTCCCCCACTACTCCTTCACACCTCTCATTTTTTAATATTCCCAAATTACCCCTACTACTCCTACACTCCACTCCCTCTTCAAGGCAGTACTGGTTCGGTATTAAGAAGCAGTACTTGTTCGATATTTAGATGCAGTACTGGTTCAGTATTAAGATGCAGTACTTATAATGTGTCAAATATTATAACACACAGTATCAAGATACAATACTGATTCAGGATTATGGTACCGACCCATCGATCTGTACCAAAAAAAACCCATAGATCAATGCATCTTTTTTCTTCTCTGTGTGTGTACTTTTCTCTTCCTTTTGGCCTCTGCGTGTGCTCTTTCCACAAGTAACAGGAAGAGAGATTAGGCTTCCTTTGTGAAAGAGAATAAATCGGAGAAGTGAGAAAGAAAGAAAAGAAAGGAACGAGAGAAAAGAAACTGGGAGAAGAAGAAAGGGAATAACATTCAGATCGGGGTTTTGCGTTTTCAGTTTTGCGATTTCATTTTAAGATTTCTGTTTTAATTTAGTTTTAAATTTACTATTTTAATATTTTATTAATTATTAAATTACTAAAATTATTTTAATACGACATGGCATGTACACGTGGATCATTAAATGACGTGGAACACACGTTTGTAAGCTGTATCAGCTGCCACGTCATTTAATGAGGGCCACGTCAGTTTTTTTTATGGACATGCCTCCAAACCAGGAAAAAAAGTTAAAAACACCTCTTTAGACTAAATGTTTGAACTTTTTAATCAGAGGACTACATGTCTGGCTTTTAAAATAGGGGGACCGAATGTCTGAATTTGTGAAAATACTAGGACCAAAACTATAATTTAGCCAAAAAAAAAGAAACGAAGAGGAAGGGAATATTTTTTTAGTTTAGGGGTATTTTAGATTTTTTTTTTTTACCAATTTGAGGGGTTGGGAGAGTAGTAGGGGTGTGGCATAAGAATGGGCCAATATCAACTAGACTTAGGGCCGGCCCTTTTTTGTTTTAGGACTAATAAATAAATAATATTTGTCGAAAAAAATTAAAAAATAATGAAGAAATCTGGAAAAGAAATTTGAAGGAAGAAAAGGCATAGATGAACGGATAAAGAGAGCGAGGGGGGAGCAGCCACAGAAGAGAAGAGGAAGAAGAAACAAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00557.27	Peptidase_M24	114	340	3.70E-54

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0004239	initiator methionyl aminopeptidase activity	Molecular Function
GO:0006508	proteolysis	Biological Process
GO:0009507	chloroplast	Cellular Component
GO:0070006	metalloaminopeptidase activity	Molecular Function
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR002467	Peptidase M24A, methionine aminopeptidase, subfamily 1
IPR001714	Peptidase M24, methionine aminopeptidase
IPR000994	Peptidase M24
IPR036005	Creatinase/aminopeptidase-like

trEMBL

trEMBL term	Description
A0A1S2YYH7	_

SwissProt

SwissProt term	Description
MAP1D_ARATH	Methionine aminopeptidase 1D, chloroplastic/mitochondrial

KEGG

KO	Description	Enzyme
K01265	methionyl aminopeptidase	[EC: 3.4.11.18]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G37040	methionine aminopeptidase 1D
Medicago sativa L.	MsG0580024836.01.T01	_
Oryza sativa L.	LOC_Os02g52420.1	peptidase, M24 family protein, putative, expressed
Cucumis sativus L.	Csa018116	_
Glycyrrhiza uralensis Fisch.	Glyur001840s00036323.1	_
Codonopsis lanceolata	Cl_chr03_33270T	_
Arachis hypogaea L.	AH05G05630.1	Methionine aminopeptidase 1D, chloroplastic/mitochondrial like

Expression pattern