Gene detail

Detail information of Am04G005300.1 Annotation

Gene ID	Annotation
Am04G005300.1	Tetratricopeptide repeat (TPR)-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G005300.1	mRNA	Chr04	13749864	13763371	+

Sequences

CDS:

>Am04G005300.1
ATGGCTCCTGTTACCTCCCAGCGAGTCGAACTAGCCAGAGTATGCAGTTCCAAAGATTGGTCTAAAGCAATTCGAATCCTCGATTCGCTCGTTTCTCAGTCTAGTTCAATCCAAGATATCTGCAACAGAGCATTCTGTTACAGTCAATTGGAGCTTCATAAGCACGTAATTAAGGATTGCGATAGAGCACTTCAGCTTGACCCCGCGCTTCTTCAAGCTTACATTCTGAAAGGTCATGCGCTTTCTTCGTTGGGAAGGAAAGCAGATGCCCTGTTGGTATGGGAGCAAGGCTATGAACACGCTCAACATCAGTCTGCAGATTTGAAACAGTTGCTAGAACTTGAAGAGCTTTTGGTGACAGCAAAACAAGGCAACAATGCTTCGTATGAAACCATTGAATCGCCCATGCCGCAAGCCAAATCAGATTCTTCAAGTAATAGGAACTTGACTAGTATTTGTGAGACCCGAGCTGAGTTTTGCGGTAATACAAGTGTTAAATCTGATATCTTGCTGAAGTCAACTGATAAATTTGACTCAAGGAATGAATTAAATAGCGAAGAAAGAGAGTTTAATAAATGCAGTGGCCAACTGAATGGAAGCCCTGATGTTATCGATAAATTAAGCTATAATTCTGAATCATGTAATGACTCTAGCGATACTTCAGAATCTTGCGATAAAGTATTTACCAATAGTGGTGAATCTAGTGACTCAAATGATGTTGTTGAAATTATTAGAAAGCCCCCCAGTAGTAAGTTTACATTTTCCCTTGAAAAAAACAGCGAAGCAAGGAAAAATAAAAAGTCTGGTGTTGCTCGCATTTCAAAGACGATGTCTATAAGTGTAGATTTCCGGCTTTCACGGGGAATAGCGGAGGTTAATGAAGGAAAGTATGCTCATGCTCTATCCATTTTCGATCAGATATTGAAAGAGGACCCTACATATCCTGAGGCACTAATAGGAAGAGGAACAGCATACGCATTCAAGAGAGAACTTCATGCTGCTATAGCTGATTTTACAAAGGCTATACAATTTAATCCATCAGCTGGCGAGGCATGGAAGAGGAGAGGTCAGGCTCGGGCAGCTTTGGGGGAGTTTGTTGAGGCTATTGAAGACTTAACTAAGGCGTTAGAGTTTGAACCCAACACAGCGGACATTTTACACGAGAGAGGCATTGTCAATTTCAAGTTTAAAGAGTTCAATGCCGCAGTTGAGGACCTTTCTGCTTGTGTGCAGCTAGACAGGGATAATAAGTCTGCCTACACATATTTGGGTTTGGCATTATCTTCAGTTGGTGAATATAAAAAAGCTGAGGAAGCACATCTAAAATCACTTCAACTTGATAGAAATTTCCTTGAAGCATGGGGACACCTGACTCAGTTCTATCAAGATTTATCAAAGCCGACAAAAGCTCTGGAATGTCTAAATCAAGTGCTGCAAATTGATGGGAGGTTTGCAAGAGCTTATCATTTGCGTGGCCTTTTGTTCCATGCAATGGGAGAGCATAGGAAGGCTATCAAAGATTTGACAATGGGGTTGAGTGTTGATAGTGCCAACATTGAGTCTTTATATTTACGAGCTTCATGCTACCATGCTGTTGGACAATACAAAGAGGCGGTCAAGGATTATGATGCTGCACTGGATTTGGAATTGGACTCAATGGATAAGTTTGTGCTCCAGTGCCTTGCCTTTTATCAGAAAGAGATTGCTCTTTACACGGCCTCAAAGTTTAACAGTGAATTTTGCTGGTTTGATATCGATGGGGATATTCATCCACTTTTTAAGGAGTACTGGTGCAAGAGATTGCATCCAAAGAATGTATGTGAAAAAGTTTACAGGCAACCTCCTTTGCGTGAGTCTTTAAGAAAGGGAAAGCTTAAAAAACAAGAATTAGCTCATACAAAGCAGAAGGCTGCTCTTATACAGGCTGCAGATTCTATTGGCAAGAAAATCCAATATGATTGTCCTGGTTTCCTACCTAATAGGCGTCAGCATCGTATGGCAGGATTTGCTGCTATTGAAATTGCACAAAAGGTCTCCAAGGCTTGGCGTGCCCTTCAAGCAGAATCGAAAAATTCTAATAAAAGCAACTCAAACTCCAAGTATGGGAAACGGGCTCGAAGAAGGGAAAGAATTAACATGCCCAGTCAGAATAGGGGAGGTGCAGGTTGTAGCACAAGTAGTGCTTTGGAAACATCTTCATATGGCATTTTAGATGATAGATCATCCACCCGTTTCATATCATGGAAAGAAATTTACTCAATAGCTGTTAGATGGAGGCAAATTTCCGAGCCTTGCGACCCTGTTGTGTGGGTGAACAAGCTAAGTGAGGAGTTTAATTCTGGATTTGGTTCTCACACACCCATGATTCTGGGGCAAGCCAAAGTTGTCCGTTACTTTCCTAACCATGAGAGGACCTTAGATATTGCAAAGACTGTCATGAAAGAGAGATCTTATGTATACAGCAAAACAGATCAGATCATTCATCTTACGAAGGATGGGAAATTAGAAAAGATCATGCATGCAAAATCATGCTCTGATCTTTATAATGTTGTTGGCGAGGATTTCTGGTCAGCTACTTGGTGCAACAGTACTGCATTTGAAGGGAAACAGCTTGAAGGGACAAGGATAACACTTTTAAAAATGGGGCAAAACGGTTTTGACTTTGCAATCAGAACACCCTGTACACCTGCTAGATGGGAAGATTATGATGCAGAAATGACAATGGCATGGGAAGCTATCTGCAATGCTTACTGTGGTGAAAATTATGGGTCTACTGATTTCGATGTGCTTGAAAATGTGAGGGATGCAATTTTAAGGATGACATATTACTGGTATAACTTTATGCCACTATCCAGAGGAACTGCCGCAGTTGGATTTGTAGTTATGCTGGGTTTGTTACTTGCTGCTAATATGAAGTTCACAGGAAGCATCCCACAGGGTTTACAGGTTGATTGGGAAGCCATTTTGAACTTGGATTCAAACTCCTTTGTGGATTCAGTCAAAAGTTGGCTATACCCATCTCTGAAGGTGACAACCTCATGGAAAGAATATCATGATATTGCATCAACTTTTGCAACAACAGGGTCGGTTGTTGCTGCCTTGAGCTTTTTTGATGAATGA

Protein:

>Am04G005300.1
MAPVTSQRVELARVCSSKDWSKAIRILDSLVSQSSSIQDICNRAFCYSQLELHKHVIKDCDRALQLDPALLQAYILKGHALSSLGRKADALLVWEQGYEHAQHQSADLKQLLELEELLVTAKQGNNASYETIESPMPQAKSDSSSNRNLTSICETRAEFCGNTSVKSDILLKSTDKFDSRNELNSEEREFNKCSGQLNGSPDVIDKLSYNSESCNDSSDTSESCDKVFTNSGESSDSNDVVEIIRKPPSSKFTFSLEKNSEARKNKKSGVARISKTMSISVDFRLSRGIAEVNEGKYAHALSIFDQILKEDPTYPEALIGRGTAYAFKRELHAAIADFTKAIQFNPSAGEAWKRRGQARAALGEFVEAIEDLTKALEFEPNTADILHERGIVNFKFKEFNAAVEDLSACVQLDRDNKSAYTYLGLALSSVGEYKKAEEAHLKSLQLDRNFLEAWGHLTQFYQDLSKPTKALECLNQVLQIDGRFARAYHLRGLLFHAMGEHRKAIKDLTMGLSVDSANIESLYLRASCYHAVGQYKEAVKDYDAALDLELDSMDKFVLQCLAFYQKEIALYTASKFNSEFCWFDIDGDIHPLFKEYWCKRLHPKNVCEKVYRQPPLRESLRKGKLKKQELAHTKQKAALIQAADSIGKKIQYDCPGFLPNRRQHRMAGFAAIEIAQKVSKAWRALQAESKNSNKSNSNSKYGKRARRRERINMPSQNRGGAGCSTSSALETSSYGILDDRSSTRFISWKEIYSIAVRWRQISEPCDPVVWVNKLSEEFNSGFGSHTPMILGQAKVVRYFPNHERTLDIAKTVMKERSYVYSKTDQIIHLTKDGKLEKIMHAKSCSDLYNVVGEDFWSATWCNSTAFEGKQLEGTRITLLKMGQNGFDFAIRTPCTPARWEDYDAEMTMAWEAICNAYCGENYGSTDFDVLENVRDAILRMTYYWYNFMPLSRGTAAVGFVVMLGLLLAANMKFTGSIPQGLQVDWEAILNLDSNSFVDSVKSWLYPSLKVTTSWKEYHDIASTFATTGSVVAALSFFDE*

Promoter(3k):

>AM04G005300.1
ACACCTTATGCATTTAAGCATATAATCGATTCCTTTCTTTTTAGAAGCCATAAACGGTCATATTTTTGAGTAAATAATCGATTTACATTCCGTTTGTTTCAAGCAAGGAATCGATTCACTACTCATCTATTTTACGTGAAAAATTGCCTCAACGGTCATATTTCTACAAACTCTATAAATAGGCACTTAGGTTTTTTTCACGAATGTAGAGAGAACACAACGCACATCTCAAAAATCAAAAAGAAGAAAAGAACTCTCACCGTCATATTCTTTCTTCAAGTTCTTCATCATAAAATCCAAATCACTCATCTCTCTCAACTACTATACTGTTATATTGCTTGAGTGATTGGATCATAGTTTCTCAGTTGTATTCATCTACTACTTGGTTGTTGTGAAATCCTGGGAAGTGTGATTGGGTCGTTCAATCGGGGAGATTGGATTAGTAGCGAAATTCTTAGCGGGGAGCTTGGGTTCTCAATTTGGGAAAATTGAGAGTGGTGTGGTAGCTATAGGGAAGTTGCTTGCTTGTAAAACGTTGAAGAAATTCTTCTCATATAGTGGTTATTCGCAAGTCCAAAGGTTGCAAACTCGGAGGCCGATGACACAGGGCTTTTATCCCAAACCTCGTAAAAATCACGGTGTATCTATTTCCCTTCTCTTTACTTTGTCTTTGTTTATATTTGTTTAACGTTATATTTGATTTCATTGTGCTGCGTTCAATATCACAATCTGTTTATCGTTAAATTTGATAATAGTGTGGTTAGCGTGAAATATCACTGTAACTGGTTCTGTCATAGGTATAATTTGCTTAGGTATTGCATATAGTTTAAATCCTATTTTCCGCATTTGACTTAAACGTGCATCGTTAGTTTTTGAAAACAAAAAAGAATTCAATTTTAGCGTATAACCTTATTCACCCCCTCTAAGGTTATCATATAGTCCAACATACCGGAGGAGGATTGATGCTTTGACACCTGCTGATGTCATCTGGAGACCCTTTGAGGACTACAGGCATGTGAGAGCCTTTGAGCAGATCTCATTATATAGGGCTTTTTGAGTTGGGAGGACATCACTGTTCCCTACATGCCGGATAGGTGCCTCCGGCAGTTTGGATACGTCTGGGTCATCCCTCGTGAGCCGCTTCAGGGTCATCCAGGGTTTAATGAAGTGATGATGCGATTATCTAGATGGAGCGAGAGTGTCTAGGAGATTCTGAGCACGACTACTGATGAGAGGGAGGTGGGTGATGTTCATCAGATTTACTTTCCATGGTACATTAGGGTATCAGTTCCCCGACTCCTTCCAGCAGCACCAGAGAGACCAACAGCAGCTGCACCAGCAGCAGCACCAGGTGTGATGGGACGTGAGGTGAGATTGATGATTATGAGCCGGCAATTGCGGATGGTGCTTGAGTCCGGAGACCTTCATCCTTCATCTCGATTGTATGGTGTGATCCGGGGCTTGATTGATTTGGCAGCAGGAGAGGATTGACTATTCTGGATTGTACTATTATTTTGCTGACTATATTTGTACTATTCTGGATTTATCTATTTGCATTTAATATTATTCCGTTAGTATTATAGTCGTTAAATTTAAAAGCATGATAGAACATAAAAGTTAAAACATAAACAACAACAAAGACAGATCTAAACTATTCCTGGTCGTCCATTATAACAACAACGTAAAATCTCATTTACGCTCCGTTGATGCTCCACGAACAGCTCCAACGGCCTACGATTCTGAAGCATGTCATGGATGTTCAACATGCTTCGTACATCGTCATCAGTCCTAATCCTCATGGACGCGAAGTAGATGCTGTCATCATCTCGACGATCGGGTTTGCGATAAGTAATACTAGTAACCTCACGGTCATCACCAATCACTTGAACTTTGATCTCCACTTTATCTTTCAAACTGTCAAAGGTGATGTCTTCACGGAGCCTGCATAAAATAGGCTTTGGACATGAGAAGTAAACACCATCTTCTCTCATGGTGATTTGGCCGCCATGGTGAATAGCGGTAAGTCTATTCTCGCTTGAGTACTGAGTTGAACAAATTTCCATTTTGGAGTGAAATGTTAGTGTGAAAAGAATGATGGTGAGTGTGGGTATTTATAGGAATCGTCACTGATTATTCACCGTTGATATTGTCGGTGCGATCCACACCGTTGATAAAAAATGTCAGTCAAATCGTGTCCGTTAAATTTTAACAAAAACGGAATTATATAATAAATAGATAAATCTGTTAGTTCAAAAAACCAAAACAGATTTATCTATTTATTAAGTAATTCCGTTTTGAAAAATAACAAAACGGAAGTACCTTATATAATTGTACTTTCATTGTGATAACATTACGAAGATGGAAGTAAGTCTGAGTTACATACTTCCGTTGTTCAAAAATATAAAGACGGAAGTATGTTTCAATTAGGTAATTTCGTTGTGTTATTTTTCCCAGAAACGAAAGTATCTTTGGGTTAGGTAAATCCGCTATGTTATTTTCTCATAAACGGAAGTATCTATGGATTAGGTAAATCCGTTAGTTACTTTTTACTAGGGACATTTTGGGAATTAAAAAATATGAGGGGGTATACACTCAAAAGCATGGGGGTAAAAAAAAATCCTTTATTTAGAAAATCCAAACCCAACCATATCACAAGCAAACAAGGCTGCAATGCGGCTTTACTTTGGGTCGACTCCACCTTTTCTCTCTCACGTGCATGCCACGCGTCAAGCGCGTCATGTTCACTCCCTTTTCATTGCACGCACCTTCTCATTCTCTTGCCCTCTCCTTCCTCCTAACTTTCAAAGCTTCAAGCTCTCAACTCCCTTTTCTCCGTTTTGCCCTTGTCCTCTGCATCTCCACTCCAGGGTCCAACCCCAATATTCTCTTCATCGGGACCCACTTGAAACTCTGAAGCAGACCAAAGAGAAGTTACTAGACACACATAAACATCTTCTCTGATCTGTGTACCTAACCACTCTTCTTTTTTCATCTTCACCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00515.31	TPR_1	350	381	6.40E-51
PF13414.9	TPR_11	356	395	3.70E-26

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT41

Gene Ontology

GO term	Description	Category
GO:0097363	protein O-acetylglucosaminyltransferase activity	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0031348	negative regulation of defense response	Biological Process
GO:0042742	defense response to bacterium	Biological Process

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR044650	Tetratricopeptide repeat protein SRFR1-like
IPR001440	Tetratricopeptide repeat 1
IPR019734	Tetratricopeptide repeat

trEMBL

trEMBL term	Description
A0A9D4YJ70	_

SwissProt

SwissProt term	Description
SRFR1_ARATH	Suppressor of RPS4-RLD 1

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G37460	Tetratricopeptide repeat (TPR)-like superfamily protein
Medicago sativa L.	MsG0580024770.01.T01	_
Oryza sativa L.	LOC_Os07g02300.1	tetratricopeptide repeat domain containing protein, expressed
Cucumis sativus L.	Csa010207	_
Glycyrrhiza uralensis Fisch.	Glyur000042s00005087.1	_
Codonopsis lanceolata	Cl_chr08_35830T	_
Arachis hypogaea L.	AH15G00930.1	Suppressor of RPS4-RLD 1 like

Expression pattern