Gene detail

Detail information of Am04G004960.1 Annotation

Gene ID	Annotation
Am04G004960.1	telomere repeat binding factor 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G004960.1	mRNA	Chr04	12725022	12730734	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM04G004960.1
GAATGATTTTACTATTAATAGTAATAACTTTGTGATCCTCCTTGCCTCATGTTTCTTACATAATGTGATAAATGCAGATTATATGGAGAAGAAAGCATCATGTCTTGGATTGAATACGCTTTTTCTGCTTACAACGCGTACAGCAGATTGGTAAGGAAGTTCCCTAATGCATGTCAAGAATCAGTTTCAATTTTTACTTTTAGTGCATATTGAATAATTTTTGGATACAGTTTAAAGCCGTTTTACGTGACAAAAATGTAATTTGATTGGGTTGGATTACGAAGTTGATACGTTCATATATACATAATTCTTGAAAGAATATACTAATAAAGGCCTACATTTTAGTGTTTTTTATTATCTTCATAACTGCATTTCTAAGCAAAAGTATTCCCAACTTTTTGACAGGTTTGTGAGGCGTGGATTTTCGGAATGTTCAATTGATTATATTCCTGAAAAGAAGAGGAAAACAATCAATCTGTCCCGCAATTCCAAGTATTATATGAAGGAGCTTCTACCAAATAGTAGTGGAATTACTGTTGGTGAAAAACTTGCTTCAAATTAGTGCTATTTTTATACTTATAATAAAGGGAGAAGCATGATTAAATGTAAGATGTTATAGGCAGTTCTGTAGACTAGAAATAAAAATGTGGTAACAATATGGTGGCTGGGATCAGTCTTTGTAACAGGTCCTCCACGTGTAACATTAACTTTCCTATTGTAAATTGTTGTAAGTGTTTAATTTCCATGCTTTGAGCGTTTATTTCCCTTTTTATACCCACAATCAGAATAATTAGCATCGATCTGCCAGTTGGAAAGATATGTTCTTAAGTAGACAATGTTTTTGTGAAGATAAATTCAGCCAGTTGAGAAGTAGATGGAACGGATTTAAGATGAACAGTTTCTGATTGAACTTTGTTACTATGAGATGGCAATTTATCTAGTTGTGCTTTCTCCTCTCATGAAAAGTCAATGATTTGAGCAATTTGCTTAGTTGATTGGGTGTCACAATTGGGATGAATAAATGTGGACACAGGATCATTTCAATCATGTAGAAGATACAAAATCCATTGAATCTCACAAGCTATATTAGCTAATTTCAGCTTCAGCAGAGCTTATTGAAATTGTGATCTGCTTATATAAAATTTTGTTCATATTTTTTCTAGTTGTTGATTGTCATGAAATAATTTTTTTTTATCTTATATTTATTTTGATAAATAATTTTTTTATTTATTTATAAAGAAAGTAACTTGTTTAATGGCATTACACATATCTATGTTATATTTATTTTGATAAATAATTTTTTTATTTATTTATAAAGAAACCAACAGGACGTTGTGCACCTGAATCCAATACGGAACATCGAATGGGGAACCTCTTATTTAAGCACCTCTGTACATCCAGATGATGAAAGAACTGAAAGAGAAAAATACCTGGATTGACTTCCCGTATTGACACCCCTCTTCCTGGCCGCCACGCCACACTCCGGCCATACACTCCTTCATTATGTGAGTTCTGATCGACCTATCAGTAAGGAAACGACCCCCCGAAGTCAGTGTTGTATTACTGTTATCATCGACTCCCTCCTCTAAACCAACCTCCACTTCCACCACTCCCTCCACACCCGTCATCGCTAGTAGTGTGAAGAAAACAAGACACGAAACAATACTTAAAACGAAAAGTAGAAAGCTGGAATCGTCTCACTTGGAGAGAAACTTCTCACTGAGAGCAAAACCTAGGAGAGAAAACAATTGTCAACACTCCGAATCATTTTTTTGACTCAAACACTCCGAATCATATCTGTGACAATTCCCCCACCTTCACTAACATTGCTTATCGAAAAAAAATATGTGATTATTCTCTATTAATTATTATTTTTGACCAAAATTCTCTACTAATTTTTAAAAATAGAAAACTAGTGACATTAATTTTCTTTCAACTTAAAAGAAAAAAAATCACCGAATGAAAAAACGCAAAAGATTGCCCTAGCTTGGGAACACTTGTATTGTGAGAAAACAAGGGGATCTTTTAGCAATTCCCAAAGATATGAAATTGCAAGCTTTAGGAAAAACACAAGAACACATTTATCTATCTCGTTATTCGATTTATCGTACCCACGCTGGTTCATCGCAGAATTTGTCGTATCAGTTCGATTTATCTGCGTCTAAAGACTCAAGCTTCTTCCAATTCGCTTCCGCGCCGTTGATTCTCCGATCCGCTACACCTTAAATTCTTGATCCCCTTTTCTCCCAATTCAAGAAGATTGTATGCCATTTATATTCGCAGGTCAGTGTGCATGATTATAGTTTCTACGCCGGCACTGATTATTTTAAAACAAAAATTCAAAATTTATCAACATTGTACTTGTACCAGCTGTAAAAAAATTTCTCCATGTTGTCATTGTGTTTTATTTTATTTTAATGTAATGTAATATCTCTTTTTACCTGCTTAATTTTGAATCTGTGACAACAGAATCGCGTGTTTTTTTTATTTGAAACGATGCTTAGATAATCCATAGTGTTGTTCTTGTTATGAGTTGTGGTTGATTCTCTAACACTAATGATCAATTTAATTGTAGATGTACATGTACCTAAGCATTTGGTTGTGTAACAAGCCCTAACCTAATTGCATTGGTATTGCAGCAATTCAGTGCATCAGTTTTTTCCTTACCTTGAATGCTTCTCACAATGTTTATTAAATAAGATTGAAGTTAATTTAGGTATTAAGGTCAACGTTTGATAATCAGAATGAGTATTATTTTCTTTCTTATAATTATTTTTTGATTGTTTTTAACTATTGAAGGATGAAAAGTCTTTTGACTTGGTGTTATTTTCTTTCTTTTAACAAACTTTGGATTGTTTCTGATTTTTGTAGGTCAATAATAATAGTCAGATTTTCTTATTTGTGGATGGACATGCAGAAGAAGACTGCATTCCACTTCAAAGCTTTTATCTAGAATAAAAGCAAAAACTATTCTGTCATAAAAAGATTGGCCTTCTTTTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00538.22	Linker_histone	123	180	7.70E-09
PF00249.34	Myb_DNA-binding	5	56	5.20E-08

Gene family

Gene family	Subfamily
Epigenetic Regulators	SMH10

Gene Ontology

GO term	Description	Category
GO:0006334	nucleosome assembly	Biological Process
GO:0000786	nucleosome	Cellular Component
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	Molecular Function
GO:0005730	nucleolus	Cellular Component
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR036388	Winged helix-like DNA-binding domain superfamily
IPR036390	Winged helix DNA-binding domain superfamily
IPR044597	Single myb histone 1-6
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR005818	Linker histone H1/H5, domain H15
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A8B8LWQ7	_

SwissProt

SwissProt term	Description
TRB1_ARATH	Telomere repeat-binding factor 1

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G49950	telomere repeat binding factor 1
Medicago sativa L.	MsG0880045993.01.T01	_
Oryza sativa L.	LOC_Os01g40670.2	single myb histone, putative, expressed
Cucumis sativus L.	Csa021058	_
Glycyrrhiza uralensis Fisch.	Glyur000491s00023692.1	_
Codonopsis lanceolata	Cl_chr04_08940T	_
Arachis hypogaea L.	AH15G00490.2	Telomere repeat-binding factor 2 like

Expression pattern