Gene detail

Detail information of Am04G004530.1 Annotation

Gene ID	Annotation
Am04G004530.1	non-intrinsic ABC protein 6

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G004530.1	mRNA	Chr04	10816575	10819604	-

Sequences

CDS:

>Am04G004530.1
ATGAGTGGTATAGCGTTGACACCCGTTGCTTACAATCCAATAACCCCATCTTCATTGAAAACCATCGAATTCAAAGGCAAAACCAGATTCTCTCCTTCTAACGCCTTATCCTTCTCCTCCGATTCCTTCGTTCTCGGCCTCGCTGAAACATTAGAAGACTCTATCCCCACTCCACAACCTCTCCAAAAACTCAGAGACTCTTCCTCCGAATCCCTCCTTTCAACTCCATGGCCTTCCCGCAAAGACGAACCCTTTCGTTTCAATGACCTTTCCTTCATTCGTTCCTCACAAATCCTCCCTGTTCCACCTCCCACCACCACCATTCCCCTTCACCCGGAACCCCAATTCCCTTGCCACGTCACCATCATCGATGGCCACGTTGTAGACTCTTTGTCTAACTTCTCTGACCTTTCTGAAGGGGTTTATGTTGGGACTCTGTCGGGTCTTGCTTTGAATTCTTCTGGTGCTGTTGCTGAAAGAGTGTCGGAATTGGTTTGTGGTTTGGACGGTGGTGATTTGTTTTGGTCAATCAACGGTATGGGTGCTCCTGATTTGACTGTTGTGTATGTTCCTGAAGGGTGTCGCCTTCAAAGTCCAATTCATTTGGTGTATTTTTCGTTGCAGGGGAGTGGGGAAGTTTTGAATGCGTTGCGGCTTTCGAATCCGAGGGTTTTGGTGGTGGTGGAGAAAGGGGGAGAGGTTGATATAATTGAAGAGTTTTCCGGTGAAGGGAATGGGAATGAGAATGAGTGTTATTGGACTAATGCTGCTTTTGAGGCGGTGATTGGTGAAGGTGGAAAGGTTAGACATTCTTATATTCAGACTCAGTCACCCACTGCTGCCCATATCAAATGGACCTCTGTTCGCCAGGAATTATCTAGTACATACGAGCTTACAGAGGTAAGCACGGGAGGAAAACTGGGCAGGCACAATCTTCATATCCAACAACTAGGTCCAGATACGGTGACTGAGTTATCAACTTTACACTTGTCTGCTGGCAATCAAACTCAGGATCTTCATAGTAGCCTTGTATTGGACCATCCAAGGGGCTATTCTCGTCAACTCCATAAGTGCATTGTGACTCATTCACAGGGACAAGCAGTTTTTGATGGAAACATAAAGGTTAACAGGTATGCTCAGCAGACAGATGCAGGACAGTTAACAAGAAGTCTTCTACTTGAACCTCGTGCAACTGTAAATGTTAAACCAAATCTCCAAATTGTGGCTGATGACGTAAAGTGCTCCCATGGAGCTGCAATAAGTGACCTGGAACAAAGCCAGCTCCTGTATTTCCAAGCACGCGGCATTGATTCAGAAACAGCTAGAAGGGTTCTAATTTTTGCCTTTGGAGGGGAAGTAATTGATAAGTTCCCTTATTCTTCTATTAGAGATAGAGTACGAAGTCAGATTAAAACTTTATTGGATCCATCTCCTAAATGA

Protein:

Promoter(3k):

>AM04G004530.1
ATCCTGGATAATAATAGGCTGTTTTTTTTGGACCCCAACTCTTTCAATTTATATCCCCACTAAAAATTTTATTCCGAAAATACCACTGTTGAAATTTACAAAGACGGAACTACATACCAGACATGTACATCTGTTTTGAAGAAAATTTCAAAACGGATTTACCGAAATAGACATATTTTCGTTTAACTTAAAAATTGGCTAACGGATTTACGTAAGCATAATTATATAACATCATATAATTTACTTCTCGTCCATGAGGATTAGGACGGATGACGATGTACAAAGCATGTTGAACATCCATGACATGCTTCAGAAGCGTAGGCCGTTGGAGCTGTACGTGAAGCATCAACGGAGCGTCCATGGGATTTTACGCCGTTTTTATCCTGTAGTTTTGAGCTGTATTTGTTGTTGTTTGTGTTTTACTTTTTATGTTAGCTTGTATGTTTGCATCAATGAAAACAAAATTTTATTTTAAATAGTCTAACAGTCTAATATAATAAACTAGTCTAAAACAATACTATCCAAGTAGTAAAAATATCGTACACTACAACAACGAAAAAAATCAATCACGTCCCTCTACCAAATGAAGCAACCTCGTGAGCTGTCTGTACGTTCGAGACTGAGGATGAATGTCTCCGAACGCAAGCGCCGACCGCAGCTGCTCGCTCACAATCATCAGTTTCTCCTCAGGTCCCCTCACACCTGGTGCTGCTGGTGCTGGTGCTGGAAGGAGACGAGGAACTGATACCCTAACGTACCATGGCAAGTATTGCTGATGAAGCTCACCCAGCTCTATAGCAGGAGCAGTAGTGATCAAAACCTCCCGAACACTGTCCCTCCACCTGGTGATATGCATCATGATCTCAGTATACGGTGGCCGATCGCGAAGCGGGTCACGAGGGATCACCTGAATGTATCCAAATTTCCGGAGGCACCTATCCGGCATGTAGGGAACAGTGATGTCCTCCCAAATCAAGAAACCTCTATATAATGACATCTGATCAAATTAAGGGTCGCTCGTGCCGATGGCCCTCAAATGGTCTCCAGATGACATCCTCAGGAGTCAAAGCATCAATCCTCCTCCTATACTCCTCCAGCTTGACCGCATCCGTCTTCCTCCTTCTTCAAAACCCACACCTAGGCCCGGATGTGATCCCAGTCTCCCCCCGCACAACTATCTGAGGAAAGTACTCAAAGATCCAGGACTGAAATGCATAAATAAACAATATCGTTAAAAATAAAGTATTTAACATTAAATCAAACAATCTCGTTAAAATTAAAAAAAATTAACTTACCATGAACAACGTGGCATACCCCCTAACTGAGTGGTACCCTCTAGGCATGAAAAGCTCAGCTGGTCGTACAAGAAAGCTAAACCTGCTGGTCCCCATGCCCACCCGCCAACTGCGGTGATGTCCTCCAGTAAGAGCAACCACTTTGCCTCAACTCTGGTGCCAGTCTTGCTACAAAAATGCTCATCCCCAAAATAAGCAAGACGAATCCCCTGACAGCACAAGTCTGGTCCATGCCTATATCACGGCTAGCTATCTCCAGCAGCCAGTCAAACCGGAAATATGGCCCCCTATTGGCGATGCACTCCTCCGTCGCCTCAGCAAGAGTAACCCCAAGCAACTCCACAGCCAGTTGGATGACATTATCAATGGTAATTGACTGAGCAGGAGACCAGAAATATCTCCCAGCCAATGGTAGATGTAGCAGACATGACACATCATCCAAAGTGATCTTCATTTCACCAAATGGTAGGTGAAATGACGATGTCTCTAGGTGCCATCTCTCCAAAAAAGCAGATAGCAGCTCATGATCCACAGTCGTGTAAGCTGAACTGACGTTGGGGGATAATCCTGACTGCCGAATATACTCCCAAAACCCTTGATTTTGTGAATAAGGGACCAACCTCTGACCGATTTTGTTGCCATGTGCAAATACTTTCAACTTACGCACAAATGTCTGAATTAAAAATAAATAAATTTACTTATACTATTAATCTATAAATTTATACAACAACACTATGTAAATAAATATATTAAATTATATTTACCTGGTCTCCAAGTATCTTAGACGCTACATGAACATCAAATCCAGTGAGGAGAGAACCATCCATAGGTCCTATGTCAACATGCTCCTGCTCCTCATGTGCCTCGTACTGGTGCTGGTAATCAGCCTGGTACTGCTGCTGATAATGATGGTACTCGGGCTCCTCATCCATCTGATACTGCTCCTGCATCTGCTGCTCCTCCTCATACTCCACAGCCTGCCCCTGGGCGCGCCTACGCCGGTGAGACGCATGTCCCGCATTCCTGATGCGGGTGTGTGTACTAGGACAAGGAGTATCTACCGGGTCACCACCACTTCGCAAACTCGGTCGTGAAGAACTCTCCCCACGCAAAATCAACCCCGGTGAATCACGGGGGATCCGGCCACCGACCCTATGAAAAGGCACTGCAAAAAAAATAAAAATTAAAAAACAAAACAAAATTCAAAAACAGATGTATGTACATCCGTTGAGAAGAAACAGATGTAAACAAAAGTACTTACTTCTGTTGACTTCAAACGGATGTATGTAAATTCGTTTTGTCAAAAACAGCAGTATGTAGTTCCGTTTGTTGGAAAACAGATGTAGGTAGATCTGTTGGAAGGAAAACGGATGTATGTAAATCCGTTTTACGCGAAAATGACAGACTCTCTCTCTGTAAAACGGATGTAAGTGAAAAATGATAAGGTAATTGTAATTTTGTAAACTGGTCAAAGGTATAAGCGTTTTTTCACCGGGTGCGTGGGGTATAGATTGATGGAGTGGGGGTTTAAAAAAAAACCCTAACAGGCTTAATGAGAGGCCCAAAAATAATGAAATGAGCCCAAGAAAAAGACAGCGTGGCAGTGGCACAAGGCGAACGCAGTTAGATGAAAAGAAAGAGGAATATGTTGTTCGTTAGAGTTGATGCTTCTGCTACAGAGGTGAACTAACTGAACTGCATAATA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01458.20	SUFBD	220	449	2.00E-60
PF19295.2	SufBD_N	59	202	1.60E-06

Gene family

Gene family	Subfamily
Transporter family	ABC

Gene Ontology

GO term	Description	Category
GO:0016226	iron-sulfur cluster assembly	Biological Process
GO:0009507	chloroplast	Cellular Component
GO:0005524	ATP binding	Molecular Function
GO:0010027	thylakoid membrane organization	Biological Process
GO:0009793	embryo development ending in seed dormancy	Biological Process

InterPro

InterPro term	Description
IPR011542	SUF system FeS cluster assembly, SufD
IPR045595	SUF system FeS cluster assembly, SufBD, N-terminal
IPR037284	SUF system FeS cluster assembly, SufBD superfamily
IPR000825	SUF system FeS cluster assembly, SufBD

trEMBL

trEMBL term	Description
A0A1S2YY45	_

SwissProt

SwissProt term	Description
AB7I_ARATH	Protein ABCI7, chloroplastic

KEGG

KO	Description	Enzyme
K09015	Fe-S cluster assembly protein SufD

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G32500	non-intrinsic ABC protein 6
Medicago sativa L.	MsG0580024679.01.T01	_
Oryza sativa L.	LOC_Os01g03650.1	sufB/sufD domain containing protein, putative, expressed
Cucumis sativus L.	Csa018711	_
Glycyrrhiza uralensis Fisch.	Glyur000572s00019037.1	_
Codonopsis lanceolata	Cl_chr02_37590T	_
Arachis hypogaea L.	AH05G03750.1	Protein ABCI7, chloroplastic like

Expression pattern