| Gene ID | Annotation |
|---|---|
| Am04G004350.1 | RNA helicase, putative |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am04G004350.1 | mRNA | Chr04 | 10402073 | 10420132 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF09416.13 | UPF1_Zn_bind | 129 | 282 | 2.00E-73 |
| PF13087.9 | AAA_12 | 692 | 887 | 2.10E-59 |
| PF13086.9 | AAA_11 | 480 | 600 | 9.50E-52 |
| PF13086.9 | AAA_11 | 579 | 682 | 9.50E-52 |
| PF18141.4 | UPF1_1B_dom | 334 | 423 | 7.80E-31 |
| PF13604.9 | AAA_30 | 479 | 680 | 4.20E-15 |
| PF13245.9 | AAA_19 | 487 | 677 | 9.40E-11 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0009867 | jasmonic acid mediated signaling pathway | Biological Process |
| GO:0009611 | response to wounding | Biological Process |
| GO:0042742 | defense response to bacterium | Biological Process |
| GO:0008380 | RNA splicing | Biological Process |
| GO:0006412 | translation | Biological Process |
| InterPro term | Description |
|---|---|
| IPR047187 | Upf1-like, C-terminal helicase domain |
| IPR018999 | RNA helicase UPF1, Cys/His rich zinc-binding domain |
| IPR040812 | RNA helicase UPF1, 1B domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR006935 | Helicase/UvrB, N-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR045055 | DNA2/NAM7-like helicase |
| IPR041679 | DNA2/NAM7 helicase-like, C-terminal |
| IPR041677 | DNA2/NAM7 helicase, helicase domain |
| trEMBL term | Description |
|---|---|
| A0A9D4YHA8 | _ |
| SwissProt term | Description |
|---|---|
| RENT1_ARATH | Regulator of nonsense transcripts 1 homolog |
| KO | Description | Enzyme |
|---|---|---|
| K14326 | regulator of nonsense transcripts 1 | [EC: 5.6.2.5 5.6.2.3] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G47010 | RNA helicase, putative |
| Medicago sativa L. | MsG0580024612.01.T01 | _ |
| Oryza sativa L. | LOC_Os07g31340.3 | regulator of nonsense transcripts 1, putative, expressed |
| Cucumis sativus L. | Csa020917 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000047s00004016.1 | _ |
| Codonopsis lanceolata | Cl_chr02_38170T | _ |
| Arachis hypogaea L. | AH05G03490.1 | Regulator of nonsense transcripts 1 homolog like |