Gene detail

Detail information of Am04G004130.1 Annotation

Gene ID	Annotation
Am04G004130.1	SU(VAR)3-9 homolog 6

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G004130.1	mRNA	Chr04	9759757	9778681	+

Sequences

CDS:

>Am04G004130.1
ATGAATTTGGAGCCACCAAGAGGAATGGCAGCATCAGCCAATAATGGACATTCTGAAGAAAAATTTGGGAAGCCATTGATGGAAAATGGGGAGCACAATTTCTGTGCTCGGCCCAAGTATAAGCGGCGTCATATTTCTGCCATTCGTGATTTCCCAGAAGACTGTGGACCATTTGCTTCTAGGAATGAACCAATTTTGAAGTTAGATATTGCTGGTTTCGGTTCTAATGATGGTGCACTTGTTGAGGATAAGTGTGGCAAACATTCAGGGCGTGATATTGTTAGTCCCAAGCATGACAATGATCCTCAACATTCTGAGGTAAAAAAAGATTCGTTTCTCAAAGAGACTCTTGATCAAACAGGTGACTCTAGTTTGAAGGAAAGTCCCGTGGTCTCATCTCATCACTCGGATGGGCCTACTTTGGCTAATGTTGAACCTGCAAAACTGACATTGGTGGGTATGGACACTTTGGATCCGGAATCTGCAACTGAAGACTGCAGTTTGAAGAAGGAAAATTGTGTGGTCTCATCTCATCAAGTAAAGGCTAATGACGATCCTGAAATAGTGGCATTGGCGGGCAAGGAAACTTTGGATACGGAATATGCAACAGAAGACCTTGTAAAACGAGAATCCTCTTGTATATCAAAGTCATCTTCTCCGGTGGGTGAGGTAGCTATGTCTGATGACTCAAAATCCTTATCAGCCAATAACAATATAGCTGGTTCCAGTACTTGTATGGAGAAGGCTGTAACTCTAATGTACCCTCCTCGAAGAAAAGTTTCAGCTGTTAGAGACTATCCTCATTTATGTGGACGCAATGCTCCCCGTCTTAGTTACAGTGATTGTTTAAAGCAGATCTCTTCTCTGAATAACAAGCGAGTACGTCAACAAAATTTGGCTGTAGATGACAATCCATCGAAAAAAGTTGCAGCCTCTGATGTAAAAAGGGTGGAAAATAACATTCAATATGAACATGGTTACAAGAGAAAGCTTGCTGACATTGATCAAGTTGATTCTGAAGGTAATGCTACACTGAGAGTCAAGAAGCTGAATGTATCTGGACCATCTTCTGAGATGAGATCGCCACTGGGAAACACAAAGAAAAAGCACATTACATTTCCTGAAAAAAGTAATCATCATCAGGTTTACATGAATTCCGAGGCAGTGGTTAAAGAGGAAAACAGTGACACTATAAAGGTTGAGGAATCATCAGGGCTATGTCTTCAGGCAAAGCCTTTAGCTATGTCTAGTCAGCGTGTTTTGACAGGAGAAATTAATAGATTACAGGTCTCATCAGACAGGAAAGTAGTGCTAGGTGTGATGCATAAATCAGAATGTCCTTGGAGGTCTGATATTGGTTCCTCCAAATCTAAATCAATGGGTGGTACAGATGGAAAGGGAAAGAAAGTTGATTTTTTTGCGGGGCTAGACAGGTCTAAAACTGCTATCAAGACGAAACATGGATTGAATCATAGTGGGCAGAAGCAGTTGAAAAAGAAAAAAGAAAATTCTGATTTTGATGACACGAAGCAATTAGTAACGTGGGAAAAGGATTCTCTTGACCCTGACAAAAATAAGAAAGACTTTCAAAGTGTCCCAAAATCAAATGGTTTGGAAGTAACTATTCCTCCGTTTGTTCATCGTAATTTCAGTGGTCATGTGAATGACTCAAATGCCCGAAATAAAGTGAGGGAAGCATTACGCCTATTCCAAGTTGTTTTTAGAAAGCTTCAGCATGAATTAGAAACAAAGCCAAATGAGAGAGCAAGTAGGAGGATTGATTTACAAGCTGCAAATATACTGAAGAAGAAAGACAAATATGTTAACACGGGCAAGCAGATTTTGGGAACTGTCCCTGGGGTCGAAGTCGGCGACGAGTTTCAGTACAGGGTGGAGCTAAATGTCATCGGTCTTCATCGCGCGATTCAGGGTGGTATAGATTATGTGAAGCACAATGATAAAAGCCTTGCTACTAGTATTGTTGCGTCAGGGGGCTATTCTGATGACTTGGATAATTCGGATGTTTTAGTATATTCAGGCCAGGGTGGAAATGTAATGACCTCTGGTAAAGAACCAGAAGATCAGAAGCTTTTAAGGGGCAATCTTGCTTTGAAGAACAGCAGTGAAGAAAAGAATCCTGTTAGGGTGATACGTGGCTCTGAATCAATGGATGGGAAAAGCAAGACATACGTTTATGATGGATTGTATCTAGTTGAGTCATATTGGCAGGACATGGGACCACATGGGAAACTGATTTATAGGTTTCGCTTGCGAAGAATTCCAGGTCAACCAGAGCTTGCTTGGAAGGAAGTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTATATGTGTGGCTGATATTTCTTACGGGAAAGAGCGAATTCCCATATGTGCCGTGAACACCATAGATGACGAGAAACCCCCACCGTTTAAATACATAACTAGCATCATATATCCTGATTCGTGTGATCTGGTTCCTTCAGAAGGCTGTAATTGCACTCATGGATGCTCGGACCTGAAGAAATGTTCTTGTGTAGTCAAAAATGGGGGAGAGATTCCATTTAATCATAATGGGGCTATTGTAGAAGCAAAGCCTCTAGTCTATGAGTGTGGACCTAAATGCAAGTGCCCTTCCACCTGCCATAACAGAGTCAGCCAACTTGGCATAAAGTTTCAACTAGAAATTTTTAAAACCAATGCCAGGGGATGGGGTGTAAGATCCCTAAATTCGATCCCTTCAGGAAGTTTTATCTGCGAATATATAGGAGAGGTTCTTGAAGACAAGGAAGCAGAAGAAAGAACTGGTAACGACGAGTATCTTTTTGATATTGGAAATAACAAGAACTGTAGTACTCTTTGGGATGGACTTTTGGCCCTTATGCCAGATTCGCAATCACGTTCTAGTGAAGAATCGAAGGATGTTGATGTTGGCTTCACTATCGATGCCGCTCAGTTGGGTAATGTGGGGAGATTTGTCAACCATAGTTGCTCCCCTAATCTTTATGCTCAGAATGTCCTTTATGATCATCACGACCAAAGGATTCCTCACGTCATGTTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGTCTTACGATTACAACTATACGATTGATCAAGTCCGTGATTCTAATGGCAATATAAAAAAGAAGTATTGCTATTGTGGTTCTGTGGAATGTACTGGTAGGTTGTATTGA

Protein:

>Am04G004130.1
MNLEPPRGMAASANNGHSEEKFGKPLMENGEHNFCARPKYKRRHISAIRDFPEDCGPFASRNEPILKLDIAGFGSNDGALVEDKCGKHSGRDIVSPKHDNDPQHSEVKKDSFLKETLDQTGDSSLKESPVVSSHHSDGPTLANVEPAKLTLVGMDTLDPESATEDCSLKKENCVVSSHQVKANDDPEIVALAGKETLDTEYATEDLVKRESSCISKSSSPVGEVAMSDDSKSLSANNNIAGSSTCMEKAVTLMYPPRRKVSAVRDYPHLCGRNAPRLSYSDCLKQISSLNNKRVRQQNLAVDDNPSKKVAASDVKRVENNIQYEHGYKRKLADIDQVDSEGNATLRVKKLNVSGPSSEMRSPLGNTKKKHITFPEKSNHHQVYMNSEAVVKEENSDTIKVEESSGLCLQAKPLAMSSQRVLTGEINRLQVSSDRKVVLGVMHKSECPWRSDIGSSKSKSMGGTDGKGKKVDFFAGLDRSKTAIKTKHGLNHSGQKQLKKKKENSDFDDTKQLVTWEKDSLDPDKNKKDFQSVPKSNGLEVTIPPFVHRNFSGHVNDSNARNKVREALRLFQVVFRKLQHELETKPNERASRRIDLQAANILKKKDKYVNTGKQILGTVPGVEVGDEFQYRVELNVIGLHRAIQGGIDYVKHNDKSLATSIVASGGYSDDLDNSDVLVYSGQGGNVMTSGKEPEDQKLLRGNLALKNSSEEKNPVRVIRGSESMDGKSKTYVYDGLYLVESYWQDMGPHGKLIYRFRLRRIPGQPELAWKEVKKSKKFKTREGICVADISYGKERIPICAVNTIDDEKPPPFKYITSIIYPDSCDLVPSEGCNCTHGCSDLKKCSCVVKNGGEIPFNHNGAIVEAKPLVYECGPKCKCPSTCHNRVSQLGIKFQLEIFKTNARGWGVRSLNSIPSGSFICEYIGEVLEDKEAEERTGNDEYLFDIGNNKNCSTLWDGLLALMPDSQSRSSEESKDVDVGFTIDAAQLGNVGRFVNHSCSPNLYAQNVLYDHHDQRIPHVMLFAAENIPPLQELSYDYNYTIDQVRDSNGNIKKKYCYCGSVECTGRLY*

Promoter(3k):

>AM04G004130.1
AGAAGTTAATGAGCTTTACCAAGACAGAAAGAAGAGTAAATATCAAGTGCATTCTTATTAGAAAATGGAATCTTATAAAGATTGAGTACCTGTTTTAAAACTTCAGCAGTATGATGACCTAGCCTTGAGTGTCAAAGAGAAAAAGGACTAGTACTGACATTGATAGGGGTATTAACAGTGGCAATGTGTACAATGGGTGTAGACACATAATTAATATGTTAAGAGGGTGAATTTACAGACTTGAGTGATGACGATGGTTGAAGCAAATTTGGAAACTTGTAGAGGCCATCCTTGCCAAACATTCTTTGATCAAAAGGTCGTGATTGACAAGGAAAAAGTTAGGCTAGAACTCAAAGAAAACACAGTTTCCTTTTACAAATTGGCTTACACTAAGTAGGTTTTTGGTAATATTAGGAACATGTAGTAGATTATTAAGGGTTAAAGTAGATTTAGAATTAAAAGGCGAGTCACAAGAAGTGGAACCAATGGAATGAACTGACAAAACTTGGCCATTTCCAATAAAGATTTAGCGTGGACTCTCAAAAGAGCCAAGCCGGTGAATGTTTTGCGAATTCGATGTTACATGGTGCGGTGCTCCTGAATCTGGGTACAAATTTACTGAGGATGTAGAGTCCATTAGTTATGCAAGCTAGAGACTGTGTTGAACAGAAGCCATGGATTGTGGCATGAGAGGTGATGCGGCAACGAAGAGTTGAAACTGGGGAGGAAGTTGTGGCAGTGATACCTAAGCTTGGTGAAAGCTAGGTCTAGTGTTGCCATAATAATTCCAAGTAAGGCAAGGGCATTGGGCAAGACATAGCAGAAAAAGATTTGAGGTATAAGAACCATGTGAAGATGTTGTGAAGAATCTGTCTAAAAAAAGCTTGGTTGCTGCAGCCAAGGAGAAATGAAAGTTGTTTGATTTGACGCATTACCGGTATAAGGATTTGGAAATTTTAGTTGATAATCCTTTTTGAACCGATGGTAACAGACATTGTTTTTGATCTCGGATAGCAGATCGTAGCGGCCAGCCCGAAAAACGCTTTAGCCGTATAGCAGAAAGTGGGATGACCATTATTTCGAAATGTCACATACTATATGATGAATATTTTTTGTTTATAAACTGTCACTAATTTAAAAAATAAAAAAAATACTCAATTCATGACTTTCAACATCAATAAATAAGATTCATAGGTGTCTCAAACAAAAAAGATTGAGGTTGAGGTTATCAAAAAAAAGAAAAGATTGAGGTTGAGAGGATGTTGCCATGGCTGAAGCCTGAAACTGAATAGTAGAGAGCATATAACGGCAAAGAGAGAGACAGAGAGAGCAACTAAGCTGGACGGAGAAGCAATGTGCAAGTAGAGAAGAAGCAGGTAACATAGAAGAGAATCGGTGCAATCACGTAATAGAGCAAGTTTCACGAAAAGAAAGAAGCAGCCACGTAACAGAAAGATTCACAAACGCATCATTTCAGTAAACTTGATAAATAAACCCTAATCTTTTAACTTCCCTTGGAAATCTCTAAAATACCCTTAAAAAACCCTTAATGTTTTAAAATTTAAGGACTTTTTTAGTAATTTCTATTTCTTCTTCAACCTAGTAGACACAAGCAGGTCACGATTCAATTTGCTATAGCGCTGTTGGCCGTAACACGAAGTTCGACGGAACACTATCATTATAATATTATATAGAAGCCAGCCGCGCTCTGCTCGTGCTATAGCGGCGCTATAGCATGTTATTCACAAGCCTGGTAGCAAATGGACATGTCATGTCCAAACTTGTGACAAACTTGGCACTGCAAGGAGCTCCAACCACCATGACCACAACTGCCATTGTTGTGATTGTCATTGCGTTGTCGCCGAGTATGAGAGGAATCATTGACTTGAGGAGGGGAGGCAACATTAGCATAAGACCTATTTGGAGCTTTCGAAGCAGAGTCAACCAAATTTTTAAGGTTAGCAGAGGTTTGAGCCTACATCTTGAATCGAGCTAGGCAGGATTCATGATTAGTACTCGAGATTAGGGTTCATACAAACTTTACACATCTCATAGTTTCCATCTCTCTGAAGGTAGCTTTTATCTCCATCTCCAACTCTCGTCTTTATCTTTGCGAACCAACTCTCCTCTTGCGACCCAAAAGAATTGTACCCGCCCGCTGCATAAGTTGTTAGATCTTGAATGAGTCCTTCCTTTGAATCAATATGCGGTTAATCTTTTGTTGTATTTGCATATTTTGAATCTGAAATGACCTATTCTTTTGGTACATGTTTGTATTTTGTTATTTTCTCTTATGGAATTCGCTGGATACACCTCTATGTGCTTTTGGTGCTGGTTTACCAAAACTGAAACCTTGTTTATGTTTTATTAGTTTCATGCGAAGGATCCATACTCAAGATGGTTAGGAAAAATTGGAGGCTTCTTACTGAAGCTTTGAACTCGTGTGGTAGTTCCTAGCAATAATCAAGTGGGGGTGCTTTTTTCCCTTTTTTTTTGGTAATTCCAATTTTTGTTACTAATAAACCGACCCAAAATAACTCCAATGAGTTTGGGTTTGTTTGAATCGGATCATACACCAAAGAAAAAATCGAAACCAAACCAACCTAAAACGATTAAATTTTATTGGTTTGGATTCACGAATCCGCTTAAACCCAAATCAATCTGACCCGTGCCTACCCTTAGTTAATTTATATGGTAATACTAATATGTCAGTTTTTCTTTCTTTTCTTTTTGGCACCTCTCCCCTCAAGGCATTAAAATCCCAAGTGCGTAAGGTTCCTTTCGCCTTTGATTAGATAATGTTAACTCTTTATTTCTCATCGTTTTTATCATTGGTAGTTTTATCTTCGTTTTTTTGTTTACCTTTTCATTTTCAACTTGTTTCCTGGGATGCTTTCCTGATTGCAGAGTAAAAAGAAGATTGCTGGATCATTAGTTGGCAAAGCTTTAGCACTTTGTTCCATATGGTTTTTGAGTTGGGAATCGGGGTTAGGTGAGGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02182.20	SAD_SRA	615	763	8.40E-50
PF00856.31	SET	903	1037	2.60E-21
PF05033.19	Pre-SET	788	884	6.60E-19

Gene family

Gene family	Subfamily
Transcription Factors Family	SET
Epigenetic Regulators	SDG23

Gene Ontology

GO term	Description	Category
GO:0005694	chromosome	Cellular Component
GO:0005634	nucleus	Cellular Component
GO:0032259	methylation	Biological Process
GO:0008270	zinc ion binding	Molecular Function
GO:0003690	double-stranded DNA binding	Molecular Function

InterPro

InterPro term	Description
IPR036987	SRA-YDG superfamily
IPR003105	SRA-YDG
IPR046341	SET domain superfamily
IPR001214	SET domain
IPR015947	PUA-like superfamily
IPR007728	Pre-SET domain
IPR003616	Post-SET domain
IPR025794	Histone H3-K9 methyltransferase, plant

trEMBL

trEMBL term	Description
A0A1S2YY06	_

SwissProt

SwissProt term	Description
SUVH6_ARATH	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6

KEGG

KO	Description	Enzyme
K11420	[histone H3]-lysine9 N-trimethyltransferase EHMT	[EC: 2.1.1.355]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G22740	SU(VAR)3-9 homolog 6
Medicago sativa L.	MsG0580024581.01.T01	_
Oryza sativa L.	LOC_Os09g19830.1	histone-lysine N-methyltransferase, putative, expressed
Cucumis sativus L.	Csa017150	_
Glycyrrhiza uralensis Fisch.	Glyur000047s00003988.1	_
Codonopsis lanceolata	Cl_chr02_39240T	_
Arachis hypogaea L.	AH05G03270.2	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 like

Expression pattern