Gene detail

Detail information of Am04G002900.1 Annotation

Gene ID	Annotation
Am04G002900.1	Zinc finger, C3HC4 type (RING finger) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G002900.1	mRNA	Chr04	7172871	7180683	-

Sequences

CDS:

>Am04G002900.1
ATGGCGACGATAAGGTCCGCTAGCCTTTCCTCCGAGGACATCATTGATTCGACGCCGTTTTTAGCGAATTCTGGCGGCTCCTCCGATGAAATCACCACCGGACGTCGATTCGTTCGGAGACAGAGGCTTCTTCAAGCGGCGCGGTTCCTCCGACAAGCGAGCGGGAGGAGGATGATGCGTGAACCGTCGGTGGTGGTTCGAGAAGCTGCGGCGGAGCAATTAGAGGAGAGGCAAAGCGATTGGGCTTATTCGAAACCCGTGGTGATCCTCGACATCGTTTGGAACTTCGCGTTCGTGATTGTGGCGGCAACGGTTTTCGTTCTTAGCCGAAATGAGTCACCGGAAATGCCTCTGAGGTTGTGGATTGCGGGATATGTTTTGCAATGCATTCTTCATATGGTGTGTGTTTGCGTTGAGTATAGGAGACGGAGGCGGTATCAACGCTCTGCATCTTCCAACGCAGTCGCGGGATCAGATAGGGTTGGCATCACTAGCAGTGGCAATTTGAGTTCTTCTTCAAGAGAGGGTTTTCGTTATGCTTCTGGCTCGGCTCAGTATGTCTCACTGGCACAATTTGATGAGGAGGGTACTAGTGTTGCAAAGCATTTGGAATCGGCCAATACTATGTTTTCATTTATTTGGTGGATTATTGGGTTCTACTGGGTATCAGCTGGTGCTCAAGCTTTAGCCCAAGATTCTCCTCAGCTTTACTGGCTATGTATAGTCTTTCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTATCGCTGTTTGCTGTTGTCTTCCTTGTATCATTGCACTTCTTTACGCTGTTGCAGATCAGGAAGGGGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTCAAATTCCGAAGAATTGAAAGTAATGAGAAACTTACTGCCACGGGCAATACTGAAGGACCTGTTGGAGGAATAATGACTGAATGTCGGGCGGATTCACCTATGGAACATGTTCTTGCTGAGGAGGATGTGGAATGTTGCATCTGTCTTTCTTCTTATGACGACGGGGTTGAGCTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTGCCTGTGTGGATAAATGGCTGCATATTAATGCTACATGCCCCCTCTGCAAGTACAACATCTTGAAAAGTAGCAACCTCGGTCAAGAGGAAGTGTAG

Protein:

Promoter(3k):

>AM04G002900.1
GAGTAAGATTCGAGCTAATTAAATTCGTCAGTAGTGTTCACGGGGTAAGGTTCAGACTAATTAAATTCTTTTATTTTAAATTTGTATTGATTTTCACGGGGTAATGTTCGGACTAATTACAACAACAAAACTATTACAATCTTTATATTGTACAACTTATTTTAGAATAATTACATTTTAAATTAACATTTCTGTTTGAGTATATTGATGTCACGTAACACGATAAGTATTAGATATTATTAGAATAATTGAAAATAAGATACTTTATCTTATCTAGATTTTAGGGTTAGTTTGTTAGAGTTTGTTAGATCTAGGTTAAGATCAAAGCAATCTTTTTATGGCTATATAAGCCCCTCTCTAGCTTCACTTTTGTAATCAATTCATTTTCCACAATCAATAAAGTTTTTTCACTTTTCCATTTTCTGTTCTTGTTATTCAACATGGTATCAGAGCGGGTTTTAATCTTCTGACCTCGCCTCTATGCTTCAACACCGCTGCCGGCGGCATTTGCCGCCGGCAGCACCACCTTTTTCAGTTTTCAGTTTATTTCCTTTTTACCGCTGCAATCACTTTTCCGGTTTCCATTACTCTGATTTTTCTCCTCTCTGAAAATCGCATTTTTTTCTCTCCCTCTTCAGAAACGCCATAATCATTTCTGGTTTCAACCTTCTACCTCGCAATCTTGATTTTGATCTGCGATCTTTCCCTAATTTTGATTCTCCTTCGACTCGTTGCTTTGAATTGTTGCTTTGATTCTCCTCTAGACCTGGATTGGGTTCCTTTTCTCAGAATCTTAATTAGGTTGATTTCTCTCTTCTCTTTCTCTCAGAATCTTGATTCATTTTTTCTTCTTGCTTCCATCGAGTGGTTATAGCATTGTCGCTTCCTCCGATTGGTTATAGCATTGTCGCTTCCTCTGAATGGACAATAAGCCCGTGCGGATGCACGGGTAATCTACTAGTTGGGTCTGAAAATCGAAATCCCACCAAACCCAACCCATAAAACATATGATCCTACATTTGTCAAGCCAAAGTATAGGACTGTTACAAAATATAACATGTGGTTATTTATAAGTAACATTGAAGGCTTTATTATCTTTGAATTTGAATTGTTAAATAGTTTCACTAGCAACCGATAGTTGCATTTCAATCTAAAACTTGAATTATATATGTATTGTTGCTCATTACGTTTACGTTGAATGATAATTCAATAAAACAAATACTAAGTATTGGTTTAAATTCTAAACTCATTAAATCGATGTTAAAATATTGATTTTGATATCGGTTTATTTTTCATATTTATACTGTTATTGTCCTATTGTTTTTTTTTTCTAAAAAAAATGATATTTTAGTAATAAACTCACTACCCAACCCAACCCATTTAAGATCCGGTTCGGTTGGTTCGTTTTACCTAAAAATTTAGGTCTAGTCTTACTGAACCCAACCCATAAATATTTGATTGGGTTGGGTCTTTAAATGCATCAAAACCCACCAAACTCAACCCATGCACATTCCTACTCACCACCGTAAACTGAGTTCACTATAGTTATAGTGAACTCACTATATGACCATCGTGAACTCAGTTCACGTTCATCTTCAACATTTTGAGGAAAAAAGTTGCAGTTGCAGAATCAAAAACCCCAAATAAAAAACCCAAACTCGGTTAATCGAATCAAAGTTGCATACCCGACATTCGAAGGTTAGTATAAGAGGAAGAGGAGGCAGTAGTAGAAGTATATGTAGAAAGAAGATGGAAGAAAAATATTTGAATTTACTTAATGAAGTGTTCGGGCTTCACAACAATTTGTACGGTCGGTTCGTACTTGTGGAGGACTGTGTTGACACAAGTGCTGCTTTCATTCTTTACCATATCCTCAAAACGTTCCTTCTCTTCTCACCCTTCTTCCGCCGTTCTCTTCCTCGCCCTCTCCAACCCTTTCTCTCACTCCGGTCGGATTTTCAAAAAGCTTGTAATTTGGGAAATTGTGAGAAGCGTAAGGGTAATTTAGGAAGTTGCTAATTAAATGGGGTGTGGATAGAGCCAGCCAAGTTATATTGGCAATAGCAATGTTTTTTTTGGTCAATGTTTGAAACCACATTGACAAGCATACTATTTTTTTCGTCATTACTAAATATTCATTTCTAATAAACAAATAATTATAAAGACAAAATATAATTTTTTTCATCAACATGAAATGTTTCTCATCGAGAATCAAAAATAATGAAAATTATATCCCAATAACATATAATTTTCTGTTGGAACTCAAAAGTAAAATTTACATATATAAAATAAAAGTATAAAAAATAATTGTTTTAACAACAAAATAATGTTTTGTCGTCAAGTTTTAAAATAAAAACATCTATAGAAACAAATTATAAAAATAGTTGAACCATTAATTCTACGAACGATAAATTCAATCTATTCCGTTATCGGTTTATATTTTTTGGTATAAATCGTGTATCATTTGTGCGCAATTATAGAGACTAATTTTTTGAGTCGGCTAGGACTATAATGAGCGGCAAAACTCTCCCTTAAGAGACTCTACCATCTCATCCAAGTGCTCTTGAATTCAGTTATCAACTTATATGGTATAATTTTTTTTTAAAAAATTATTTGCTTATTTAATTTAATTTTAACATAAAAACAAAAACGTTATTTTCAAACCCATACTTCGTTCAAATCAAAAATCGACCTCATTGATTAATCCGAACAAAAACCGGACAAACGGCACGGGATGATTGGTACCTCATGCTCAACCACACCCTCTGTCCCTCTCTCAAAAACAAAAAAACTAGTCGTCGTCATCACTGATCATCACCATTTCCCAAATCCCTTTTCAAATAGGGCTCTTTCTCTTCTCTTCTCTTCAAATCATTTCCCTCTTTCACTTCCACCTCCACACAGGTTTTATTTTAGCTATTCTTTATTCATGTTCTGAACCTAGTCAATAACCGACTCGGCGAGTCACGTTTTAGAATCGTCTTTTCAATCCGAAGCACT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	340	382	4.30E-12
PF17123.8	zf-RING_11	340	368	9.20E-09
PF12678.10	zf-rbx1	340	382	1.10E-07
PF13923.9	zf-C3HC4_2	340	381	2.50E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0061630	ubiquitin protein ligase activity	Molecular Function
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0016567	protein ubiquitination	Biological Process
GO:0016020	membrane	Cellular Component
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

trEMBL

trEMBL term	Description
A0A1S2YXP1	_

SwissProt

SwissProt term	Description
RING1_ARATH	E3 ubiquitin-protein ligase At1g12760

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G12760	Zinc finger, C3HC4 type (RING finger) family protein
Medicago sativa L.	MsG0880046214.01.T01	_
Oryza sativa L.	LOC_Os02g45240.1	zinc finger family protein, putative, expressed
Cucumis sativus L.	Csa000306	_
Glycyrrhiza uralensis Fisch.	Glyur000195s00012861.2	_
Codonopsis lanceolata	Cl_chr07_10780T	_
Arachis hypogaea L.	AH15G04280.1	E3 ubiquitin-protein ligase At1g12760 like

Expression pattern