| Gene ID | Annotation |
|---|---|
| Am04G002710.1 | transcription factor jumonji (jmjC) domain-containing protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am04G002710.1 | mRNA | Chr04 | 6693595 | 6721913 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF02373.25 | JmjC | 408 | 524 | 5.00E-43 |
| PF08429.14 | PLU-1 | 886 | 977 | 1.10E-41 |
| PF08429.14 | PLU-1 | 974 | 1174 | 1.10E-41 |
| PF08429.14 | PLU-1 | 1133 | 1390 | 1.10E-41 |
| PF00628.32 | PHD | 237 | 284 | 3.50E-15 |
| PF02375.20 | JmjN | 29 | 62 | 1.90E-14 |
| PF01388.24 | ARID | 100 | 185 | 1.20E-11 |
| PF02928.19 | zf-C5HC2 | 618 | 669 | 1.20E-11 |
| Gene family | Subfamily |
|---|---|
| Transcription Factors Family | ARID |
| Ubiquitin Family | PHD |
| Epigenetic Regulators | JMJ17 |
| Transcription Factors Family | Jumonji |
| Transcription Factors Family | PHD |
| GO term | Description | Category |
|---|---|---|
| GO:2001141 | regulation of RNA biosynthetic process | Biological Process |
| GO:0016020 | membrane | Cellular Component |
| GO:0008168 | methyltransferase activity | Molecular Function |
| GO:0032259 | methylation | Biological Process |
| GO:0006364 | rRNA processing | Biological Process |
| InterPro term | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR019786 | Zinc finger, PHD-type, conserved site |
| IPR001965 | Zinc finger, PHD-type |
| IPR019787 | Zinc finger, PHD-finger |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR004198 | Zinc finger, C5HC2-type |
| IPR013637 | Lysine-specific demethylase-like domain |
| IPR003349 | JmjN domain |
| IPR003347 | JmjC domain |
| IPR036431 | ARID DNA-binding domain superfamily |
| IPR001606 | ARID DNA-binding domain |
| trEMBL term | Description |
|---|---|
| A0A3Q7Y4M8 | _ |
| SwissProt term | Description |
|---|---|
| JMJ17_ARATH | Lysine-specific demethylase JMJ17 |
| KO | Description | Enzyme |
|---|---|---|
| K11446 | [histone H3]-trimethyl-L-lysine4 demethylase | [EC: 1.14.11.67] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G63490 | transcription factor jumonji (jmjC) domain-containing protein |
| Medicago sativa L. | MsG0580024393.01.T01 | _ |
| Oryza sativa L. | LOC_Os05g23670.1 | transcription factor jumonji, putative, expressed |
| Cucumis sativus L. | Csa012846 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000320s00014321.1 | _ |
| Codonopsis lanceolata | Cl_chr02_51120T | _ |
| Arachis hypogaea L. | AH05G16990.1 | Lysine-specific demethylase 5A like |