Gene detail

Detail information of Am04G002550.1 Annotation

Gene ID	Annotation
Am04G002550.1	sporulation 11-2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G002550.1	mRNA	Chr04	6168734	6171926	+

Sequences

CDS:

>Am04G002550.1
ATGGAAGATCTCCGAAATTCGACGCTGAAGTTCTTCAGCGATCAAGAGCTCTGTTACGCGGATATCGTTCCTCCTGCGCAGGTCCGAGCAAGAATTGAAGTTTCAGTGCTCAGCTTTCTCAAAATATTGAATGCATCCAACCCTGCCATCTCAGATTTGCCTCTGATTCAGCGAAAATCAAGCAACAGTCGAGTGAATCAGGGCCTGTTGACTGAATTATCATATGTTTTTCTCTCTAAATCTGTATCCACAAGGTCTCTGATGAGACCTAATGCAGCAAAGGCCTTTGTTAGGGTGTGGAAGGTGATGGAAATGTGCTATCAAATATTGCTGCAAGAAAAGCGTGTCACGCAGAGGGAGCTCTTCTACAAGCTGCTGTGTGATTCGCCACATTTGTTTCCTTCTCAAAAGGATGTCAATAGGACAATTCAAGATCTTGTAGCATTGCTTCGGTGCAGCAGATACAGTCTTGGAATCATGGCATCTAGCAGGGGACTCATTGCTGGGCGCCTGGTTTTGCAGGAACCGGGCAAAGAGTCTGTTGATTGCTCTGTATGTGGGTCTTCTGGACATGTAATTTCTGGTGACTTGAATTTGTTAGAGAAATTTATTCTAAATGCAGATGCACGGTACATTATAATTGTTGAAAAGCACGCAATATTTCAACGGCTTGCCGAGGATACGTTTTTTCATCAAATTCCAAGCATTCTTATCACGGCCAAAGGTTACCCAGATATGGCCACAAGATTTCTTCTTCATCGAATCAGTAGGGCGTTTCCAGACTTGCCAATTTTAGCTTTGGTGGATTGGAATCCAGCTGGATTAGCTATTCTCTGCACCTTCAAATTCGGAAGTGTAGGAATGGGCCTAGAGTCATATAGATACGCTTGCAATGTCAAGTGGTTAGGACTGCGGGGAAATGATCTATCCCTGCTGCCTGAAGAATCTCTCGTTCCATTGAAGCCAAAGGATCTACAAATTGCTCAAAGCTTGATGTCCTCGGGAATCTTACAGGAAAATTACAAGGAAGAGGTTGCCTTAATGGTTCAGAGTGGCAGAAGAGCTGAAATCGAGGCCCTATACTTTCATGGATATGATTATTTGGGGAAGTACATAGCTAAAAAAATTGTACAGTCCGATTATTTATGA

Protein:

Promoter(3k):

>AM04G002550.1
CGTCACATTTCTGTTGACTGATCAGATGGATTTAACGACAGGGACTATTAATGAAAACGGAAAAAAAATGTAGGGACCAAAACGCCTATTTCGTTAATGTAGGGACAAAAACGAAAACTCAAATTTTATAGGGACCAAAAACATATTTAACCCTACTATTTATATATTTATTTATTCATTAGTATTTCATTCGATCGTAGTTGAATCAAATGAATCAATTAAATTAGTTAGTCTTATCAATTTTATCTTGTGTTGCAGCGGTATTAAATCTCTTGAAGGGAGAGTTTTGCCGCCTATTGTGGTCCTACTTGGCTCGAGGATTAGTCTCTGCAGTTGCGGCAGAGGATACCCGGTTTATACCAATTTTTTTTTTATTTTGTGTCCAGTTTTAAAAATATTTATTATTTATTAGGCTTAATTACAGTTTTGGTCTCCCTATTTTCCCCAATTCACGATTTTGGTCCTTCAAGTTTTAATTTGACGATTTTGGTCCCCCTATTTTCCCGATTTGTAAAATCAAGGTCCCCCCTCTTAATTGGTCAAAATTGAAAGTCAATTTTAAAGTCAATTTTGACTGACTTATCCTACGTGGCAGTCCACGTAGACTGCCACGTAGGCGCACTGTTCACTGTCTCTCTCACAGCCCTCTCCTCTCTCTCACTGTTCATCTCTCTCTCACATCCCTCTCCTCTCTCTCACAGCCCCCACCGTGATCCCCTCCTCCCTCTCCTCCCCCCACCGTGACCCCCTCCCCCCTTCACATCTCCCGCACCTCCCCTTCCCCTTCGCACCTCCCCTCCCACTGTTCTCTCTCTCTCCTTTCTCTCTCACCGTCACCACCCACAGCCACCACCCACATCGTTTTCCTTTCCCTCCTCTGCGACCTCCGTGAACCCCTCCCCCCTCCTCCGCGATCTGAACGACGAGAGAGGGAGAGCGACGAGAGAGCGATGAGAGAGGGAGAGCGACGAGAGAGAGAGAGAACGACGAGAGAGGGTGGAGGGGAGAGCGAACCAGAGAGGGGGGAGAGATGCGAATGGGAAGGATCGGTGAGGGGGGAGGGGAGGTGCGAAGGGGGGAGGGGAGGACGGTGGGGGGAGGGGAGGGCACACGGTGGGGGGAGGGGAGGGGGCTGTGAGAGAGAGGAGAGGGCTGTGAGAGATAGAGAACGGTGCTGTGTGAGAGAGAGAACGGTGTTGTGTGAGAGAGAGAACAGTGCTGTGAGAGAGAGATGAACAGTCCTGCCTACGTGGCAGTCTACGTGGACTGCCACGTAGGATTGAAAGTCAAAGTCAGTTTTAATTTTGACCAAATTAAGAGGGGGACCTTGATTTTACAAATTGGGAAAATAAGGGGATCAAAATCGTCAAATTAAAACTTTGGGGACCAAAATCGTGAGTTGGTCATAATAGGGGGACCAAAAGTGTAATTAAGCCTATTTATTATAGTTATTTTTCATAACTATATAAGTCAAAAGTTTTCTTTGTCAAAAAAAAAAGTCAAAAGTTTTGTTAAGAGAATATATTAATCATACTTTTTTCTCTAAACCCCGGCCGGTTCTCTCAATTTTTTCTCACTCTTCTCTTCTTTCTAGATCTATGTGATACCCAGTTTTTGATCTAGAATCACTCATCTGAATTGTTTTTCTGTCTTTTTATCTAAATAAGTATTTATCCCATAGATCTAGTTTCTATTTCGTCTTTTTCTATATTTCACCGGTTGTTGGGTGCGGGTGCGGCGTTTTTGATTTCCCGTCTTGTTGCAGTGTTTTTGATTTCCCGTGTTGTTGCAGTGTTCGTTTGGTTCAGATTGACAGATCAACTTCGACTTATTGCAGATCCAACCAATGACTAGGGCCTCAAAGTTACAGATCTGGAAGCATAGGTACTGACTTTTATTTTGTCCCATTTTAGGCATTTTGCCGTTTTATGAGCAATCTACTCTAATATAATAAAAACACATGTTAGCAATTTTACATTTTTAGACATCTACACATTTTGCCAATTGTCAAAAAATGGGGGCAAATTTGTAAATGCACCACTAAAAGACAAAAACATTCAGCTTTTGGCAGTTTTTTTTAAAAAAAAACACTTTCTGACGCGCTGATGCGTGTCAATTTTTATTTTTCTTAGAAAAAACTGTTTTTTTAAAAAACGGTTTTTCTTAAAGTTGTTTTTTTTCATAATTTTTTTTTTCCAGTTTTTTTGTCAAAAATATTTTAAAAAAATTTCCTTCTTTTTACTAAAAATTTTACCTTAAATCTCATTTTCTTTTTTCTTCTTTTTTACTCTATCTAAATTTTTTTATTTACTATAATCTATCTATTAAAACTATTAAAACCAATCCATTTAACCACTAAAAATTGTAAAAAAAACTTTAACCACTACCAAATATTACAAAATGACTTACTATAATTAAACAAATATGATTTAATTAATATAAATCATATAGAAAAATATGAGTTAACATGTGGCAACGGGAGTGACAACGAGAGACTGGTAATGGGATCGGCAACAGGAGTGGCTACGAGAGAGGTAACGAGAGTGCCAACGGAGATGCATATTTTACCTAAAATCTCATTTTCTTTTTTTCTTCATTTTTACTCTATTATTAACATTATAAAAAGATGCCGATTATTTTAAACTTTTTGAAACACAACTATTTTAATAAATTTAAAAATATAGTCTCTTATAAAGTTATTCTCATTTTTTTTATTTATAATTTTATAACAAATTATAACAAATACAGTATTACCTCCGCGGATAAAATAGTAGTTGAGTTAATCTCAAAAAAAAAAAAATAGTAGTCGAGTCGACTAAATTAGAAGTTACAACTCGCACGGTGCAAGTGGAAGTGGCGAAACCCAATTTTTTTGGGCGATGTGTGCCTTTTAATTATGGCGTTAACGCATTTGCCAAAAAAATAACCATATAACTCTTCTGTTTTGCGCGCCAAATTATACTACTGGAATTAATTTTTTTTGAGATTTCACTTTCTCCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04406.17	TP6A_N	94	159	9.20E-18

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009553	embryo sac development	Biological Process
GO:0009555	pollen development	Biological Process
GO:0048316	seed development	Biological Process
GO:0051276	chromosome organization	Biological Process
GO:0022607	cellular component assembly	Biological Process

InterPro

InterPro term	Description
IPR036388	Winged helix-like DNA-binding domain superfamily
IPR034136	Topoisomerase 6 subunit A/Spo11, TOPRIM domain
IPR013049	Spo11/DNA topoisomerase VI, subunit A, N-terminal
IPR036078	Spo11/DNA topoisomerase VI subunit A superfamily
IPR002815	Spo11/DNA topoisomerase VI subunit A

trEMBL

trEMBL term	Description
A0A1S2YXM2	_

SwissProt

SwissProt term	Description
SPO12_ARATH	Meiotic recombination protein SPO11-2

KEGG

KO	Description	Enzyme
K10878	meiotic recombination protein SPO11

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G63990	sporulation 11-2
Medicago sativa L.	MsG0580024373.01.T01	_
Oryza sativa L.	LOC_Os08g06050.1	OsTOP6A2 - Topoisomerase 6 subunit A homolog 2, expressed
Cucumis sativus L.	Csa012822	_
Glycyrrhiza uralensis Fisch.	Glyur000143s00011211.1	_
Codonopsis lanceolata	Cl_chr03_51950T	_
Arachis hypogaea L.	AH12G20920.1	Meiotic recombination protein SPO11-2 like

Expression pattern