Gene detail

Detail information of Am04G002220.1 Annotation

Gene ID	Annotation
Am04G002220.1	AMP-dependent synthetase and ligase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G002220.1	mRNA	Chr04	5400509	5411531	+

Sequences

CDS:

>Am04G002220.1
ATGGCGGATAAGAGATTCATCATTGAGGTCGAAAAAGCAAAGGATGCGAGTGAAGAGAGTCCATCCAGAGGACCTGTGTACCGCAGCATCTTCGCCAAAGATGGATTTCCCTCTCCCATCGAAGGTCTCGATAGCTGCTGGGATGTCTTCCGACTGTCCGTTCAGAAATATCCAACTAGTCCTATGCTTGGTCACCGGGAAATTGTAGATGGGAAGCCTGGCAAGTATAAGTGGCAAACTTACAAAGAAGTGTATGACCTAGTGATCAAAGTTGGAAATTCCATCCGCAGCTGTGGTTATGGAGAAGGTGTAAGATGTGGTATTTATGGTGCTAATAGTGCAGAGTGGATTATGAGCATGGAGGCCTGCAATGCTCATGGACTTCATTGTGTTCCTTTATATGATACCTTAGGTGCCGGGGCTGTAGAATTTATTATATGCCATGCAGAGGTCTCCATTGCATTTGTAGAAGAAAAGAAGATACCCGAGCTATTGAAGACATTTCCAAATGCAACAAAGTGTCTCAAGACAATTGTGAGCTTCGGGAAGGTTAGCCCTGATCAAAAGCAAGAGGTTGAGAAGTTTGGATTGACAATATATTCATGGGATGAATTTTTACAAGTGGGTGAAAATCAGAGTTTTGATCTACCTGTGAAGAAAAGGAGTGATATCTGTACAATAATGTATACTAGCGGAACTACTGGCGACCCCAAGGGAGTATTGATATCCAATCAGAGTATTATTACCCTCCTAGCTGGGATTAAGCGACTGTTGGAGAATGTCAATGAACGATTGAGTGAGAAGGATGTATACTTATCATACCTCCCTCTTGCACATATCTTTGATAGGGTTATTGAGGAGACATTTATATGGCACGGTGCCTCAATAGGTTTCTGGCGTGGGGATGTTAAATTGCTAATTGAAGACATTGGGGAGCTAAAACCAACTATTTTCTGTGCTGTACCCCGTGTACTTGATAGAGTCTACTCGGGTTTGACACAGAAGATTTCTTCTGGAGGCTTCCTAAAGAAGACATTATTCAACTTTGCTTACTCATATAAGTTGAATAACATGAAGAAAGGGAGTAACCATGCAGAGGCATCTCCACTTCTGGACAAAATTGTGTTTGATAAGGTAAAGCAAGGTTTAGGGGGTAAGGTACGTCTTATTCTGTCTGGAGCAGCACCTCTATCTTTACATGTGGAAAGTTACTTACGCGTGGTGACTTGTGCTCATGTCCTACAAGGATATGGTCTCACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAACTAGGAATGCTGGGAACAGTGGGCCCTCCTGTACCAAATGTGGACGTGTGCCTGGAATCCGTTCCTGAAATGGGATACGATGCCCTTGCAAGCACACCAAGAGGAGAAATTTGTGTTAAGGGAGATACCTTGTTTTCGGGGTACTACAAACGTGAAGACCTCACGAAAGAAGTTCTGATTGATGGATGGTTCCATACAGGGGATATTGGAGAGTGGCTACCTAATGGAAGCATGAAAATTATTGATCGTAAGAAGAATATATTTAAGCTTTCACAAGGAGAATATGTTGCTGTCGAAAACTTGGAGAATATTTATGGCCAAATTCCTTCTATTGAATCTATATGGGTTTATGGAAACAGTTTCGAGGCATTCCTTGTTGCTGTAGTTAACCCCAGCAAACTAGCACTCGAACATTGGGCAGAAGAAAAGGGTATATCCATCGACTTCGATTCTCTTTGTGGAGATTCTAGGGCAAAAAGTTACATACTTGAAGAGCTCTCAAAGATTGCGAAGGAAAATAAGTTGAAAGGCTTTGAGTTTATAAAAGCAGTTCATCTTGATCCAGTTCCATTTGACATGGAACGCGACCTTATCACTCCAACATATAAGAAGAAGAGGCCTCAGTTGCTTAAATACTATCAGAATGTGATTGATAACATGTACAAGAGTGGAGGTAAACCCACTGCCTGA

Protein:

Promoter(3k):

>AM04G002220.1
CTTTCTACAAAGCTCCAAAGTTGGTGTTGAATGCCATGGTCAAGATTCAAAGGGATTTCTTATAGGGTATTAGTGAAGGTGATAGAGGTATGTATTGGATTGCTTGGGATAAGGTTTGCCGTCCGAAGAAGGAGGGAGGCCTCGGCATTAAAAACCTAGAGTTGTTCAACATGGCTCTATTATCCAAGTGGAAGTGGAGGATGTTAGTGGAAGAGGATGCGAGTTGGAGGGAGTTGTTACTGTTTAAATACAACGATTTTTCTTTAGCTTTCATTCATGGTTCGGTGGAGGCTTTTAATAGGCGGTCGGCTGGTTCTATTTGGTGGCGAGATTTGCTTAATTTGGAGAGTTTTCTTCCCAACCGTGGCTGGTTTCGTTTGAGTTTGAGAAGGAAGCTTGGCAACGGTGCATCCACTCATTTTTGAACGGACAATTGGATTGGAAATTCACCCATTTGTGCTATTTTTTCTAATCTTTATGCAGGTTGTTCCTTCAAAACAGCAATAGTAGATGACATTGGTTCGTGGGTTGGTGACTCTTGGCTTTGGGAGCAACCGTGGATGCTTATTCAGGATCCGGTTTGTGCCTAAGAAGCTGCTGAATTACACAATATTTTACAAGATGTTTCCCCTTTAAGGGAGGGGCGCGATGCTTGGGTCTGGTTGCAGGAAGTCTCGAAGGTGTTTTCGGTCAGCTCGTGCTACAGGTTGTTGACTGAAATTGTTGCTGTCCCTGGCAACGAGGTTGTTGTCTCTGAATCCGAAGCAAATGGAAGCAATTTGAAGTGCATTATTGTGAAGCTTTGGAAAACAATCACTCCGTCCAAAGTCACTATCTTCGGTTGGCGTTTACTTCGTGATTCTTTGCCCACCAGAGATCTTCTTTTCCGCCGTCATGTTATACAAACTGAAACAGCAGCTGGTTGTCCGTTTTGCTTAGATCACCGCGAAGACTTTTGTCATTTGTTCTTGAGTTGTAGCTTCACTCACGACATTTGGTCTTGTGTTTGCGATTGGTTGGGGGTTCAACGTTTAGAAGCAACATCTATTCTTGAACACATGCGTGGATTTGGAAAATTGTGCCAAGGGAGGAGGTCAAGAAAAATAAAATACTTGATTTTGGTCACGACTTGTTGGTGTATTTGGCTGGCTCGCAACGGGCCTGTCTTTAGAAATGAGGAGTCTTCTATTGAATCCATAGTGATCCGCATTAAGATCCTTAACTTGGATCTGGATTGTGTATAGACGGGGGTCTAGTTCATGTTTGTCGATTTCCACGTGGTGGATTAATCCTCTAGATTGCCTAAACAATATGTAACTCATCTTGTTGTTTGGGTTTGAACACCCCTAGTGCTCCTTGAATGAAATCTTTACTTATCTAAAAAAAAAACTTCAAATTTTGATACATGAATTCCTTTGACGAAAGATATTAAATTTTTTTTTGACCAAAGATATTAAAATTTTAAAATTACAAATATTGAAGGATAATTAAGAAAAACAATTTAGAACATAAATGCTTAAATATATGTTTGGCCCTGCAAATATGTCCATAATCCATTTAGGCTCCTGTAATTTTTTTTAAAATGGCCCTTACAAATATTAAACGTTTACAATTAAACCTCTCTATTAACTTTCCATCCAAAAAAACTGACATGGCTAACAGAAATGACATCAGCATGACATCATGAATGATTAACAGAGAAAAACTAACAGAAAGATTATCGTTTTTGAATTATGTCAATCTTTCTCTGTTAATTATTCCCCTTTTTGGAACAGTCTGAAGCGGAATTGAATTGTTTCAATCTTTCTCCATTAATCTTTCTTTGTTAATCATTGATGATGTCATGCTGACGTCATCTCCGTTAGTCACATCAATTTTTTTGGATAGAAAGTTAACAGAGAGGCTTAATTGTAAACACTTAATATTTGCAAGGATCATTTTAATTTTTTTTACAGAGGATTAAATGGATTATAGTCATATTTGCAGGGGCCAAACATATATTTAAGCCGAACCTAAATATAATAATTCTTGTACCTAAAAGTATTTGGACGAGATTATTCGACTTTTGAGTATATTCCAACTTAACAAGAGGTCTTAGATTCGAATCCAGTTTTGCACACATAATACTCCATTTACCCCCAAAAATAATTATTGTTTTTGCCTAAAAAACTACTATTATTTTTGCTTTAGATTTAGATGCTTGGATCCTACCCCAAGGTCTCGGGTTCGAATATTGGGTGTGGTAAAAACTCTGTTGGGAGGGGAGAACCACACGGGCCGGCAAAGCTGGGTACTCGTGGCCAGCCAACTTTCCCGGCGTAAATTAGTCATCGGCAAAGCCGGTGGAAACTGCGCATCAAAAACATGGTAACAAAAAAAAAAGAATCTTGGGTGTGGCAAAAACTCTGTTGGGAGGGGAGAACCACACGGGCCGGCAAAGTCGGAAACTCGTGGCCAGTCAGGTTCCCCGGCGTAGATTAGTCATCAACAAAGTCGATAGAAACTACGCAACAATGACATGGTAATAAAAAGAATTGCAGCTTGATTTTAAAAATTTGATGCAATTAAAATTTTAAAATATAACGGTAAAAGAAAGATAACATAATTGATCATTCTTCATATCCAAACAACCAAAAAAATAATCGTTTTATCCGGTTCCGTGAGCAACTCTGCACAAAAAGGTACATAAAATCGCGAAAGAAAATCCAAAAATTTAAAAAGTACGAAAAAAGTCAAATAAAAAAGTTGCGTGATCGAGCGATTACTATTTGTTGACCAATCCAAACCTAAATCTCGTATAAGTCTCTCTGGAAGCGAAGCAAACAATACCACACACCACTCACCCGCTTCTCTTCAAAGTCAAAATACCGGCATTTGAATAAGCGACGAACTTTACCGAATTTGCATTTAAATTTTCTCCGCCTTCTCTGCTGTTATCTCCGTTCTCTCTCTTTTCCAATTCCAACTCCAATCGCTTTGACATTCGTCGTGGTCTCAGTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00501.31	AMP-binding	67	524	6.70E-98

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0009698	phenylpropanoid metabolic process	Biological Process
GO:0016207	4-coumarate-CoA ligase activity	Molecular Function
GO:0003881	CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	Molecular Function

InterPro

InterPro term	Description
IPR045311	Long-chain fatty acid CoA synthetase, eukaryotic
IPR042099	ANL, N-terminal domain
IPR000873	AMP-dependent synthetase/ligase domain
IPR020845	AMP-binding, conserved site

trEMBL

trEMBL term	Description
G7KAK9	_

SwissProt

SwissProt term	Description
LACS4_ARATH	Long chain acyl-CoA synthetase 4

KEGG

KO	Description	Enzyme
K01897	long-chain acyl-CoA synthetase	[EC: 6.2.1.3]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G23850	AMP-dependent synthetase and ligase family protein
Medicago sativa L.	MsG0580024346.01.T01	_
Oryza sativa L.	LOC_Os01g46750.1	AMP-binding enzyme, putative, expressed
Cucumis sativus L.	Csa020350	_
Glycyrrhiza uralensis Fisch.	Glyur000269s00013920.1	_
Codonopsis lanceolata	Cl_chr07_06780T	_
Arachis hypogaea L.	AH05G16330.2	Long chain acyl-CoA synthetase 4 like

Expression pattern