| Gene ID | Annotation |
|---|---|
| Am04G001790.1 | Pentatricopeptide repeat (PPR) superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am04G001790.1 | mRNA | Chr04 | 4473805 | 4480147 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 242 | 286 | 2.30E-117 |
| PF13041.9 | PPR_2 | 312 | 358 | 2.30E-117 |
| PF13041.9 | PPR_2 | 347 | 395 | 2.30E-117 |
| PF13041.9 | PPR_2 | 418 | 464 | 2.30E-117 |
| PF13041.9 | PPR_2 | 452 | 501 | 2.30E-117 |
| PF13041.9 | PPR_2 | 490 | 532 | 2.30E-117 |
| PF13041.9 | PPR_2 | 698 | 742 | 2.30E-117 |
| PF13041.9 | PPR_2 | 939 | 988 | 2.30E-117 |
| PF13041.9 | PPR_2 | 974 | 1023 | 2.30E-117 |
| PF01535.23 | PPR | 244 | 273 | 7.00E-110 |
| PF01535.23 | PPR | 315 | 345 | 7.00E-110 |
| PF01535.23 | PPR | 351 | 380 | 7.00E-110 |
| PF01535.23 | PPR | 385 | 415 | 7.00E-110 |
| PF01535.23 | PPR | 421 | 449 | 7.00E-110 |
| PF01535.23 | PPR | 803 | 831 | 7.00E-110 |
| PF01535.23 | PPR | 978 | 1007 | 7.00E-110 |
| PF13812.9 | PPR_3 | 243 | 288 | 1.00E-92 |
| PF13812.9 | PPR_3 | 301 | 360 | 1.00E-92 |
| PF13812.9 | PPR_3 | 371 | 431 | 1.00E-92 |
| PF13812.9 | PPR_3 | 406 | 466 | 1.00E-92 |
| PF13812.9 | PPR_3 | 441 | 499 | 1.00E-92 |
| PF13812.9 | PPR_3 | 475 | 533 | 1.00E-92 |
| PF12854.10 | PPR_1 | 309 | 341 | 1.50E-76 |
| PF12854.10 | PPR_1 | 414 | 446 | 1.50E-76 |
| PF17177.7 | PPR_long | 286 | 436 | 6.10E-48 |
| PF17177.7 | PPR_long | 434 | 532 | 6.10E-48 |
| PF17177.7 | PPR_long | 963 | 1084 | 6.10E-48 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0003735 | structural constituent of ribosome | Molecular Function |
| GO:0003677 | DNA binding | Molecular Function |
| GO:0051301 | cell division | Biological Process |
| GO:0006351 | DNA-templated transcription | Biological Process |
| GO:0019538 | protein metabolic process | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR002885 | Pentatricopeptide repeat |
| trEMBL term | Description |
|---|---|
| A0A1S2YXF0 | _ |
| SwissProt term | Description |
|---|---|
| PP241_ARATH | Pentatricopeptide repeat-containing protein At3g18110, chloroplastic |
| KO | Description | Enzyme |
|---|---|---|
| K17710 | pentatricopeptide repeat domain-containing protein 1 |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT3G18110 | Pentatricopeptide repeat (PPR) superfamily protein |
| Medicago sativa L. | MsG0580024285.01.T01 | _ |
| Oryza sativa L. | LOC_Os06g09880.1 | EMB1270, putative, expressed |
| Cucumis sativus L. | Csa019840 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000051s00003455.1 | _ |
| Codonopsis lanceolata | Cl_chr02_23200T | _ |
| Arachis hypogaea L. | AH05G15730.1 | Pentatricopeptide repeat-containing protein At3g18110, chloroplastic like |