Gene detail

Detail information of Am04G001320.1 Annotation

Gene ID	Annotation
Am04G001320.1	PLANT HOMOLOGOUS TO PARAFIBROMIN

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G001320.1	mRNA	Chr04	3541529	3543276	-

Sequences

CDS:

>Am04G001320.1
ATGAATCAGAATCCGATGAGAATGAGAATGGATCCCTTGTCGGCTCTGAGAGAGTTCACGATGAGAGGTGATTTGGAGAAGATAGTCCGTCTCAACGGCGAGTTCCGGTTCGGCGAGGAGTACTCATTCCCCTGCTCCGTAGAAACAGCTTACCGTTCAACGAAGGGGAACCGTTACACACTGGAAACCCTAGTCCACTACATCAAAAACCACCATCTCAAGCACACCGAATACTTCCAGAACACTTTCGCTCTCGGAATCCCCTCCGTCACTCTCCCCGATCGTAAACCAATCCTCCAATACCTTCAAGGAACCCTCGCCTCCACCGATTCCATCGAGTATCGCCCCGAAGACCCTTCCTTCAATCCACCCCCAATTCTCCCTTCTTCCTCTTCCTCCCTCCCCAATCAACTTCAGAAATCTGAAGAAGAAGAAAATTTCGACTTCATCTCCATGATTAGAGGCGTAGAGAAGCCCCTCAAGGATCGCGAGTCTCTATTGGAGTGCAAAAATCGCGATTTCTACAGCGTTCTCGTTGCTGCCACCAAGCGCGAGGAAGAGCGACAAAGGATGGAGTCCCATCAGAGAAAGGATGGTCTCGTTGCCAAGAGTCGATTGATGGGCTCTGATGAATTCGGGGACGAATTAGGTTACGATCCTACTCCTAAACCTAAAATGCACCTCAAAATTGGAGAAGGTGTTCCAATAATTTTGGTCCCTAGTGCTTTTCAGACCCTCATTACTATCTATAATGTTAAGGAGTTTTTGGAGGATGGGATTTATATACCCACTGATGTTAAGGTCAAGCAGATGAAGGGTACTAGGCCTGATTGCGTTACTGTTCAGAAGAAGCTCAGCAGGGATAGAGCTGTTACTGCTTATGAAGTTAGGGATAAGCCCTCTGCCCTTAAAACAGAGGACTGGGATCGTGTCGTTGCGGTTTTCGTCTTGGGAAAGGAGTGGCAATTCAAGGATTGGCCCTTCAAGGACCATGTTGAAATTTTTAACAAAATTACAGGATTCTTCATGCGTTTTGAAGATGATAGTTTGGAGTCAGCAAAGACTGTCAAACAGTGGAATGTAAAGATTATTTCGATAAGTAAGAACAAGCGACATCAAGATAGGGCTGCGGCATTGGAGGTGTGGGACAAACTAGAAGAATTTGTACGCTCGCGATCACATTCTTGA

Protein:

Promoter(3k):

>AM04G001320.1
TTCTATTTACTAATTTTATTTTTTATTTGGATAATTGAGAGATGTTACAACTAAATAGTATAACTTCTAAGTAGTGGTAGTGTGTGTGCGTGATCTTTATTTGTCATTTTCATCTAAGTAGACAAAAAAAATTAAATAATATAACTTCTATAAATAATGGCCATAAAACATGTTAAATTAAGAAATTAAAGTGAGTAAAATTGTCAAAACAGAGACATCACAAAAAATAAAGATAAAAAATGGAGTGAGCATATCGAGTCAAAAAGAGCGGGAGAAAATCCATTCTGTTTTAACTAACTCAATAGAGACTCCATTCCGTTCTAACTAACCCAACGCGGTTACATAGATTGGACACGCGTCGTTTATTGATTGGTTAATGATCAGTATAAAACCGTTCACAGGGTCCGATTCACTCAAAACTCATTGCTGAAGAGTTTGAACTCTGAAGAGAAAAAATAATAGCAGTGCGAAAATTCCCAATCAGAAAGAGAGAAGAATGGAGCAAGTGATAGTGACCGGTGAGAAGAAGAACGCCAAGATTAATGGCGAGGCGGAGAATCTGAAGAAGAAGATCATTCGTATTCCAGTTTCAAAGACCAAGAAACCCCTCTTCTTCTACCTCAACCTCGCCAAGGTATCAAATCACTCATTTTTTCCAATTTCATTTTCATCCAAATTTTAAGAACTGTGGCGGTTATTCTCTAATCTGTGACTCTGCTTTCGTGTTTCATTCAATCGCTTTTCTTGATTTCGTTTTTCATTTTTTATTGTTTGTTTGTACTTCGCAATCTAAAAGCATCGCTTCTTCCTATTTTTCTTGGATAATCTCTTCATTAATTTGACTTCAAAATGATCTTCTATTTCTCTCTGATGCAGAAGTATATAAAGCAGGACCATGAAGTTGAGCTATGTGCATTGGGCATGGGTATGATCTTTTTTTTTTAATCTTTCTTTTTTGATAGATAGATACACTGATAGGGTTCAAGCGGCTTACTATCTTGTTACTTCAAGATTAGGTTCTGTGGGAAATTAAACTTCAAAAATCAAGGGTGGGAAATGATGTGAGGGTGTTCTTGATTATGAAAAAGTGAGAAGTAGAAATTTCAGATTCAAATCATGTACAAGAATGCATTAAGGATGTGAAAATCAACTTACATGCATTTGATTGCATGAAAACTACTTATTATAAACCAATCGCACATTAAATGTCAAAACTGCATGTATTGTGCATTCTTTCTATCATTCTATGTAGTTGAGTTCTTCACATCAGATTTAGTATATAACTGATAACTGATATTTTATTGTTTTACCTTTTGTTTTACTAACATTTTTTGTTTGAATTAAATACCAGCTATTCCAACTATTATAATCATCTCTGAGTTTTTGAAAAGTAATGGATGGGCAATTGAGAAAAGTAAGATCACTTCTCTCTGCAAAGTATTTAAGTTTCTCTAGAATTGGTTTTCACGTGGGTGTATATCTTGCAGGTATAATGACATCCACTATTGATGCTAAGGATGACAAAGAAGGTCGGGGGATTCCAAAGGCTAAGGTTCTGATCTTATTGCATTTCCTTTGATCTGGATTATCACTTAATCTTTAAGTTTTCAATGATAGTTTGGGATGAGAATAATAACATGTCATTATTTTGTACTGTTTTGCACAGCTTCATATTCTACTGGGAAAGGCTAAGAGTGTTGACCAAATTGTTGTTCCTGCAAGCGCCTCCGACAATGAAGCATAAAAGTAGCTAGCAGAGTAGCAGAACTAATAAGGGAGAGATGCTGGAACTCTTCTGCTTGTTTGTTGTAGTATGTGTAACTGAATTTACCATGTAGATATATGTTCATGTTCTTTCATTCATTTGTCTTTCATTGTGTCTACTAGGGATTGTAATAATGTACAGTTTTGGTAGCCCTTCTAAAGGCCATTTTGGCACAAGGCTGTTGCAATTTTAGTCCTGTAAATAACGTGTTGTTCCTTATACAGATGTACTTTCTCACCATTCATGTTAGTGTAAGAAGTGTTAGATGGTTCTCAACCCCTTTCTCCTTCTCTCTGTGATCCAAAAAGGTGCATTTCTCAAGTGTTAATAATTGTGAATACCCCCAAATGAGTATGTCTCAGGTCTGATACTTAACATAATCGCTACAGATGTTACAGAAGGGATAATTTGGCTACATTGACATGAATTTCTTTCTTTGTCTTAGTCATCCCAACAACCACATTATGCTTAATAATAAGCATAGGAGTCAACAAAATAAGAAAAAGTGCGGGTCAATCCCCACTCCCATCGAGACTATCCACACTATCTTATGATATGAAATGACTAAACTAGCATGCACTAGCTAATGTATGTTGTGTCTTGTAAAAAAAAATCTAATGCTCCTATGTGAACTCAATTCACACGTTTAAAACTAATTTCTGATTATATGAACTCAGCTCATATAAATTGAGCGTGTAAATTGAGTTCACATATGAACTCAACGTGTAATTTGAGTTCACATTTATGAATATATATATATATATATATATATATATATATATATATATATGAACTCAGCATGTAAATTGAGTTCACATATGCTAAGTTTTGAACTTGTGTGAACTCACTCCACATATATTTGTATGATCTTAGTGCACACATATTCAAAACTAATTTTGAATGTATGTAAAATCTAGTTTACACAAGTTTGTGTGAATGGAATTCATATAAATTATAAAAGGATGTGTATAAAAATTAAGAGTATTTTTCATTTTTTAAAAACGATTTATTTTACTAGATAGCTCAATGGAGTGGGGGATAGACCCACCTAAGAAAAATTCTAATACAATTGATTTTGAGTAGAATTAATTTAGAGAGTCAACAATTTTGAGCAAGGCCATTTAACGGGCATAAGGGGATAATTGTCGAGTAATAATAAGGTTTTAAAAAGCTTTTTAAAAAAAAAAACAGTAAGGTTAAAAAGCAGCTTAGCTTGGGGTTTAGGTGGTTATGGT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF05179.17	CDC73_C	234	388	2.90E-49
PF16050.8	CDC73_N	11	113	8.50E-20

Gene family

Gene family	Subfamily
Epigenetic Regulators	PAFE1

Gene Ontology

GO term	Description	Category
GO:0016593	Cdc73/Paf1 complex	Cellular Component
GO:0006368	transcription elongation by RNA polymerase II	Biological Process
GO:0000993	RNA polymerase II complex binding	Molecular Function
GO:0032968	positive regulation of transcription elongation by RNA polymerase II	Biological Process
GO:0051301	cell division	Biological Process

InterPro

InterPro term	Description
IPR032041	Paf1 complex subunit Cdc73, N-terminal domain
IPR038103	Cell division control protein 73, C-terminal domain superfamily
IPR031336	Cell division control protein 73, C-terminal
IPR007852	Cdc73/Parafibromin

trEMBL

trEMBL term	Description
A0A2K3L4B3	_

SwissProt

SwissProt term	Description
CDC73_ARATH	Protein CDC73 homolog

KEGG

KO	Description	Enzyme
K15175	parafibromin

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G22590	PLANT HOMOLOGOUS TO PARAFIBROMIN
Medicago sativa L.	MsG0580024188.01.T01	_
Oryza sativa L.	LOC_Os03g46190.1	parafibromin, putative, expressed
Cucumis sativus L.	Csa000099	_
Glycyrrhiza uralensis Fisch.	Glyur000051s00003390.1	_
Codonopsis lanceolata	Cl_chr08_22950T	_
Arachis hypogaea L.	AH05G14860.1	Protein CDC73 homolog like

Expression pattern