| Gene ID | Annotation |
|---|---|
| Am04G001060.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am04G001060.1 | mRNA | Chr04 | 3182330 | 3183880 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 21 | 69 | 2.30E-51 |
| PF13041.9 | PPR_2 | 129 | 176 | 2.30E-51 |
| PF13041.9 | PPR_2 | 331 | 377 | 2.30E-51 |
| PF01535.23 | PPR | 333 | 360 | 2.90E-43 |
| PF13812.9 | PPR_3 | 330 | 377 | 2.30E-24 |
| PF20431.1 | E_motif | 448 | 510 | 2.30E-14 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0003723 | RNA binding | Molecular Function |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0008233 | peptidase activity | Molecular Function |
| GO:0051301 | cell division | Biological Process |
| GO:0006508 | proteolysis | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046848 | E motif |
| trEMBL term | Description |
|---|---|
| A0AAN9K1J7 | _ |
| SwissProt term | Description |
|---|---|
| PP347_ARATH | Pentatricopeptide repeat-containing protein At4g33170 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G33170 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0780039977.01.T01 | _ |
| Oryza sativa L. | LOC_Os04g57940.1 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa004658 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000347s00029052.1 | _ |
| Codonopsis lanceolata | Cl_chr04_50390T | _ |
| Arachis hypogaea L. | AH18G22570.1 | Pentatricopeptide repeat-containing protein At4g33170 like |