Gene detail

Detail information of Am04G000640.1 Annotation

Gene ID	Annotation
Am04G000640.1	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G000640.1	mRNA	Chr04	2212010	2216907	+

Sequences

CDS:

>Am04G000640.1
ATGGATGACTCTGATGCCAAATCTGCTGAAAACCAGAAAACTGAACAAGTATGTAATTTCTTCAGAAAACCAGTCAATAAGAAGAATATAAGGAAACGTACTATTGATAATGAAGATGATGGAGAGGACTCAAACAATGAAAGCTCTTTGATTCATATTCAGAAAAAGACCCCAAAGACTGACAACTTGTTCTTTTCCAGCGGCTCTTCAAAAATCTCTGCATCTGCTGAACCAAGTGAAGAATCTGTGAAACCAGTCTTTCATTTTGAGTCTTCAAAAGAAATTCAAGTCCAGCACGATAGCAAAGCAACAGCAACTCTAGAGACTGAGACTGACTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAAGCATCGGAGAGTCTCAAGGGGAAAAAATCCAGTTCACAGGATGAAAAATTATACAAGGGGATCAACAATTACAAAGACCATAAGGCTGGATTTCGTAGAGAGCATACAATTGCCAGTGAAAAAGCTGGTGGTGCACATGGTCCTCTCAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACCGGTTACTGTGGGTATGGTGATTCGTGTAAGTTCATGCATGATCGTGGGGATTACAAATCTGGGTGGCAGATGGAAAAGGAATGGGAAGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATGCCGAAGAAGAGGGTGCTAATTTACCCGATGAAGATGATGATGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGAAACCCGTTTGTGGATCCTGTTGCAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAATGCTTTGTATGCAACCAGCCCACGCTTGGCATTTTTAATGTTGCTCATGAGATACGAAAAAAGATGGCAGAGGATAAATAA

Protein:

Promoter(3k):

>AM04G000640.1
CCCGAAATATTTCAGTTGAGGTCGACCAAATAGTGGCGAAAAAAGGAGAAATCAATTACAATAGTTGAAAAAAACAAATTTCTCAAACAAATCTGCCACAAAACGGTTAAAAGAATTCCCAAACCCAAACCCATGTTAAACCACATCAAAAGCATACTTCAAAAGAAAGATATTTGCAAGCAACAAGAATCTGAAATCACAGTAGCTATGAATAATTAAAAAATAGTTAAAATAACAAAAGCGTTAGATGCTGAAGTTGAAGCAGAAGTTGGAGTTGACATATTAGAAACCTTATTACCGTTGTTGGTGAGATTCATAGTTCAGTTTATAGATCCAAACGGTAGACAAGAATTGGATATTGAATCAAAGGCAGGTGTAACGCAAAAGATAAAGAAGTGGGGTACCAGAAGGAGCAGAAGAGAAGGTGAGGAAAGCAAGCATAGCAGCTTGGTTTTGAGCTTGTTTGGAAGAAGTGAAGGCAGCTGGGGAATTGAAGGTTTCACCATTGACAACAACAGAAGCCTTAAAGCTTGCCTCCGAAGGATTCGCGTGAGGTCAACCGAAATATTTTCGTTGATGTCAACCGAATAATGTAAAAAAAGGGTGTGTCTCAAAAAATATCCGTTCGAGTGTGTCTACCCATAAGTTTTTGGTTGACCTCAACCGAATCACACGAAATTTCAAAAAAAAAAAAAAACACAGAGCGCGTCTTATTAATGGCATATCGGTCATTTCGGACGGTTTGGGGGTGAGGGGTGAGTTGGGAAAAGTGTTGGCCTAAAAAAACGTAGTGGGTCATCTCTGCGTTCTGGCTAGCTGATTACCGCCTCAAAAGCTAGCTAGGAATCAAAAAATTTGGCCGAAAACCTTGGTGTAGCGGCAGCAACAGGAACTTACAGCATTTGAGGCCGCGATCGCCGCACCTGAAAACCACTCCGCACCGGCACTCTGCATCGCAGCAGTCCTTGATTCTACTGCGCTACTTCGCAATCGCACTCCATCGCCGCTATCGACTACATAGGTTTGTTCTCCTTAGGTTTCTTTTTGTGCAATTTCTTTCATAAAATCAAGTATCCGAAAGGAAAACGATAATACTTGTATGTTCGGCGCGTTCAATTGTTTTTATTCGTTTTGCTTTATTTATTGAAACTTGAAAGCAAAAAATGAAACCATCAGTGTATTTGTGGTTTATTGCCCATATTTCGATCAGTAATGGAGACTTAGAATATCAATAACCAAGGAAACTATAGAACTCTTGCGTTGTGTAATGTACTTTGTAAGTCATGTTTGTTTAGTTTGTAAATACTATTTTTGTTGTTATATTTGACTTGGTAAGCTAGCATAGTCGGTTAAGCTAGGCATAATCTAAAAGTTGACTGTAATTTCCATCTAATGCTTTTTCTGTTTTTGTGTGAAATCCTTCTTCCCAATGCTTCTGTTACCGATGGTGTATTGGATGAAGATGCATTTGAAATTTGATTTGTTTGTTTACTGCAGCTTGATTTTATTATTGTATCAAGAGTAGGATCCTTTTAATTTCATTTGGAAGTATACCTTCTTTTACTAATGTGCTGTCTAATAGCTTGTCTTGTTTCTATGTAATATCTCATAACGTGTTTTAACATGTTTCAAACCTGTTTTTATCATCCTTTGGTTTTATGGTGCAGCTCTAAAATGTTTTTTTAACTTTATTATTGGTGTTTAACAAACTTCACCTTCAGTGCCTAAAAACTGTTTTACTAGAGCATAGTTAATTAAGTACAAATTTTGGTATGCAAAACATTTTAGTTGATGTGTTTATAGTTGATTGACCTGCTGTGCTGTGTGCCTGTTCCCCTTTCTTTTCTTCTCGAGTGGGTTTTGAAAATGATGCCTAATTCCTAATAGAGATGTTTCCACGTGGAACATGGTTAAGGTTCCAATACTTTGTTTACATGATAAGTGATATATGGTTCACTTCTCTTTTTTTTCCAAGTCGTTTATCTGAACTTGTAAATAAATAATTCCACTTGGATCCTTTTATTTTTTTGTCTTTTAGCTTCAACAAATCTAATTTTTTTATTTAAATTTTTTTTCGGGTTTAAGGTTGATCCTATCAGACAAGGAAGCTGACTATCAACCCATTCGATGCTTCATCTCGAATTAGCTACTTCATTCTTCCCAAGTTCATTGGCTAGGGAGCATTATGTGCCCTCTGCCTCATAACTGTTGCTTCTTCCCGAGTTCATTGGCAGGGAGTTTTTGTGCCCTCTGCCTCATAACTGTTGCTTCTTCCTGAGCTCATTGGCAGGGAGAGTTTATTGGATACATTGAACTATCTACTACCGTGTTTATCAATTAAATGGTTTTTTTGTTCCATAGGTTGCTTCACTGGAAATGAATATTTTCTTTAGTTATAGACAGGATGTTTTGGTTTGATTTTCACTTGTTTTTTACAATGTAAAGTAGTATCAAGGATACATAAAAAAAATTAGTATCAAGGAAAAGTTGTCTACCAACGAACAAGTTCCTATGATAACTAGAAGTCTTAAAACTGCTTCTATTAGATATATGGACTTAATATTTTTCTAATATCAACTTAGTAGTGATTAATGAATGTTAACTTTCTTTTTGATAAAATATGAGTGTTCATAGTCACGGCATTGTGATATAAGGTGAATGGTGATCGATGAACTTATAGCTTATTAATGATTTTGTGATATATAATGTTTGTTTTAAACATTTTTGGTTTAATTTTTTTATTATGGTTTGATTCTTAATCTTTTTTAGTTTTTTTTTTTTAAATTTTAACATCATCCTATAAGTGCGTATATAATGATGCGTCCAAAACACTTCAATTTTGTACAAGCGTTTTTCTGATGAACATATGTAAGTGCTTATGGCACAAAGACTTAAATAAGTTGTTTATGCAAACAAGGCTTTTGTCTTATTTCTCATTTTTTATTTCGATGTTCAAAAACTCATTTTCCTTTACACATTTTATTGCTACAGTTGTATCCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00642.27	zf-CCCH	190	215	4.40E-10
PF13920.9	zf-C3HC4_3	268	310	2.20E-08

Gene family

Gene family	Subfamily
Transcription Factors Family	C3H

Gene Ontology

GO term	Description	Category
GO:0005684	U2-type spliceosomal complex	Cellular Component
GO:0003677	DNA binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR017907	Zinc finger, RING-type, conserved site
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR036855	Zinc finger, CCCH-type superfamily
IPR000571	Zinc finger, CCCH-type
IPR039971	Pre-mRNA-splicing factor CWC24-like

trEMBL

trEMBL term	Description
A0A9D4XR21	_

SwissProt

SwissProt term	Description
C3H1_ARATH	Zinc finger CCCH domain-containing protein 1

KEGG

KO	Description	Enzyme
K13127	RING finger protein 113A

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G01350	Zinc finger (CCCH-type/C3HC4-type RING finger) family protein
Medicago sativa L.	MsG0780041345.01.T01	_
Oryza sativa L.	LOC_Os02g19804.1	Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed
Cucumis sativus L.	Csa019929	_
Glycyrrhiza uralensis Fisch.	Glyur000295s00015292.1	_
Codonopsis lanceolata	Cl_chr07_06680T	_
Arachis hypogaea L.	AH12G10130.1	Zinc finger CCCH domain-containing protein 1 like

Expression pattern