Gene detail

Detail information of Am04G000590.1 Annotation

Gene ID	Annotation
Am04G000590.1	protodermal factor 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am04G000590.1	mRNA	Chr04	2089668	2093315	-

Sequences

CDS:

>Am04G000590.1
ATGTTTAAGAACAACAACAACAACAACAACATCATGTTTGGTTCTTCCTCTACTCACAATCAAATGCTTGACATTTCCGCTGAGAGTGATATGGTAAGGGCCAGAGATGAAGTCGACTATGAGAGCCCAATGGAGGATGTACCTTCAAGTTCTGAACAACAGCTGCTACCTAACCAACAACGTCGTCCAAAGAGAAAGAGCCGCTCCCGCCACACACAGGCGCAAATTCAAGAAATGGAAGCGTTCTTCCAGCACTGCCCTCACCCGGATGACAAGCAGAGAAAAGATCTCAGTCGTAATCTGGGATTAGAGCCTCTACAAGTCAAATTTTGGTTCCAGAACAAGCGAACCCAGTTGAGGGCTCAAAGGGAAAGACAGGATAATGGGATTTTGAAAGCTGAGAATGAAAAACTCCGTGCTGAGAACTCAAGGTACAAGGAGGCACTCACTAATGTCCCATGCAACAAATGTGGAAATCTTTCTACCCTGGGTGAAATGTCCTTTGAAGAGCAGCACTTGAGGATAGAGAATGCTCGTTTAAAAGAACAGTTTGCTAGGATGTCAGGTGAAAATGTTGGAAACACAATGACCAATGCTTCATCATCTCACAATAACAATTACAACCAAATGCTTGATCTCGGAGTTGTTAATGTTGACTATGGAGCACAGACTGGTGTGGTAGCAGAAAGGTATGTTGGTGGTGGTAGTGGTACTAATAATGGTGGTGGTAACCTTCTGAGGTCATCTGCTGATGCTGAAAAACCCATGATTGTGGAGCTTGCTGTTATAGCAATGGAGGAACTAGTAAAATTAGCTAAGGCTGGACCTGTTGACCTTTTATGGGTCCCCACTATTCACCATACCGAGGCTCTAAACGATGATGTATACCATAGGATGTTCCCTTCCAGACCCTTGGGCATAAGAACTGAAGCTTCGAGAGAATCCATTGTTGTCAACATGAATTATACCAACCTCATTGAATTTATTATGAATGTTAAAAATTGGTCAACTTTGTTCTGTGGTATTGTTTCAAAAGCATTCACACTAGAAACCCTTTCAACTGGTGTGGCAGGAAATTATAATGGTGCCTTGCAAGTTATGTCAGCTGAGTTTCAGATTCCATCACCATTTGTTGCTACTCGCGAGAACTATTTCGTGAGATACTGTAAGCAACTTCCAGATGGGATATGGGCCATAGTTGATGCATCATTGGAGAATATGCAGCCTATTGCTTCAATTTCGAGAAGCCGGAGAAGGCCTTCCGGCTGTTTGATCCAAGAAATGCCAAATGGTTTTACTAAGGTAACATGGATCGAACATGTGGAAGTGGATGACAGAGCAGTACCAAATTTGTATAGATGTCTAGTTAATTCGGGTCTTGCCTTTGGGGCGAAACGTTGGCTATCTATTTTAGAAAGACAATGTGAACGCCTTACTTGTTCAATAGCCGGGAGCCTAAGAGCAGGGGACCTCGATGTGGCTATTTGTGGTGAGGGGAGGAGAAGCATGTTGAAGCTGTCAGAGAGGATGGTAGCTAGCTTTAGTACTTGTGTTGGTGCTTCTACAGCACATGCTAATTGGACAACTTTGCCCTCAACCGGAGTTAATGATGTCAGGGTGATGACAAGGAAGAACACGGATGATCCTGGCAAACCATTTGGTATTGTGTTCAGTGCTTCTACTTCCTTCTGGATTCCATCACCACCAAAGATCGTTTTTGATTTCCTTCGTAGGGAAAACTCGAGAAACGAGTGGGATATTCTCTCCAACGGGGAACATGTTGAAGAAATTGCACACATAGCAAATGGACCTGATCTTGGAAACTATATCTCTCTACTTCGTGTGAATAGTACTCCAAATACCTTTCAAAGTAACATACTGATACTTCAAGAGAATTGCACGGATTCTACGGGGTCATACGTAGTGTATGCTCCTGTGGATCTTTCTGCCATGAATATGGTGCTAAGTGGAGGAGATTCAGATTATATTGCACTCCTACCTTCAGGCTTCGCTATTCTTCCTGATGGGCCTGGGGGATCAAACGGAGGCCCAATACACGATGTTGGATCTGGAGGTACTCTACTGACAGTTGCATTTCAGATATTAGTGGATTCTACTACTCCAGGGGAAAGGATAGGTCTAAATTCTGTATCAACTATAAACACTTTGATTAAGGCGACAGTTGAAAGGATCAAATTTGCTGTTAGTCTCAGATGTAACACCACCTCTCAGAATGTTACTATGGTAATTATTAAATTCAATTAA

Protein:

Promoter(3k):

>AM04G000590.1
TTAAAAAATTACAATTTGACCCTTCAAATTTTCTGAAATTACAAAAATATACACAAAACCTTTTTTTAGTACCACTTTCATGGAAAATACCTAGTATGTTCTGTGGTTGCAGTTTAATCTGATCTACATCATAAAAGAATTATCCTTATTGCTGGGAAGCAACTGTAGTACTGTGAATGTACATGTCTAGGCAAATTATGGCTAGGAAAGACATGGTATTTAAGTGCGTCCATTAGCGAACTCCCTCTCTTTCATGGGAAATTATAGTTATTCTAGTAATACGATACTTATTCCCATCTCATTTTTTAAAATGCCTCCAAGAAGACAGAAAGAGCAAACTCTACAAGATGTTCAAATTGAAGAAATGAGTAGAAAAATCCAGCATTTACAAGAAATCGTAAATGCACAACAAGAACTCTTAGAAGTCATTGTCTGCTGAAACAAAAATTTAGACATGAAGATATCAAGGTAGACATTCTTGATTTTGAAGGAAAGCTTTAACTTGAGGAGTTTGAAGATTGACTACATACTGTTGAAAGAATATCTGAGTCCAAGGAGATAGTATAGGAGAAGAAGGTGAAGATCGTTACTGTCAAGTTAAAAAAGCATGTTTCCATTTGGTAGAAGAACCTTAACAAAAGCAAACACGTGAAGGAAAAAGTAAGACCAAGACGTGGAAGAAAATGCATGTTACCTCCTCCTTGGAAGACTTTAGCAATTCGATCGTCGTTCCTTATTTGACGATTATGCCAACACCTACTCTTTTGTCAAAGATGGAGTAAAAGTGAAGTTAACTCCTTTGCTACTGAGTGAACTTGATCAAAGAAAGAAAGAATCCAACCCATTGGTGCCATTAGTCATAGAGACTCAATTGAAGGAAGCTATAGATAAAGTCCATAGTATTTGTTTTGTTCTATTGTTTGAGTTCAATGAAAATACTGCCCTACCAATAGAATTTGGACAGTTACTCACCAATTTTCTAGATGTTGTACCGAAAGAAGACATGGACTACCACCCATGCGAGGTATAAAACACGCCATCGACTTCATCTCTGGAGCTGTCGTTCCTGATCGACCAGCTTACTGAGTGAGTCCACAAGAGCATGTAGAAATCCAACACAATGTTGAGGAATTATTGAAGAAAGGATTAATTCAGGAAAGTGTTGGTCCTTGTATTGTTCTGCAATTTCAGTACCCAAGGAAGATGTTAGCATGGATTTTTTCTTTGAATTAACTCAGACTCAGCTTCAGAAAGATTCCATAATGGTAGTTATGGATAGATTTTCAAAAATGGCCCACTTCAGGCCATGCCAAAAGACTAATGATATTGTTTAAGTTGCTGACTTATATTTTAAAGAAATTGGTCGTTTTCATGAGATTACGAAAATCATCACTTCTGACCGGGATGTTAAATTCTTAAGCCACGTTTGAAGAAATTTATGGAAGAAGATGGGTACTAAGCTCCAATTCAGTAGTGCTAGTCATCCATAGATAGATGGACAAACCGAAGCTATGAACAGAATTTTGGGAAACCTACTTTGGAGCTTTGTCGGTAATAACTTGAAACTGAAACAATGGGATCTAATCCTTGCACAAATTGAATTTGCTTACAACAATTCAACTAAGCAAACTACTGGAAAATACCCTTTTAAGGTGGCTTACGGCACTCGACCACATAGTCCTCTAGACTTAACCCTCTCATCAGATAAACAACAATTTAGTACAGCTGTAGAACGCAGAGCGAAAGAAATCAAGAAGCTGCATGGACAAGTTCGCGAGCAAATTAAGAAACAAAACTTAAGATACAAAGCTAATAGTGACAGGCAGGGAAGACAAGAAATCTTTAAAGTTGGAGATTTGGTATGGATGCATCTGCGAAAAGAATGATTTCCAAATCAACCAAACCAAATGTGAAGTTGTCCCAAAGAGTTGATAATTGGACACTCCAAAATCTTCAACACCTCTTTTTTTTTTTTTTTTTTTCATTTCTCTTTTTCCACCTCTCACAATCATTTTTCCCTCTTGTGTGTTTTGAAGGAATTTTGGGCGCCCATGAATAGTTTTTATTAAAAAATTATACATCTATTTAGGGATAGAGATTAAGTGACCAAACTATACCATGCACTCCTGTCTATACCAAACTATTTGTAGAAAAAGAAGATTCCACATGTGTGCACCTTATAAGAAAAACAGATTATAACTCATAAAACAACACCAAACAACCAAGTAACCAACCAATGATGTTGCATATAGCAAACCACAAATAATTTGGAATGCAAGAGATAATAGTAGACTGAGGCTGATACATAGATAGAAGTTTTTAAGAGACTTCAGGAGCTACTCACTTCATATCTCTCTCTTTATTTACACCGGGTCGTCCTTCCATAAATGCTTTTACACCCTCTCAATCTCTCTGCAATAACTCCATGCTTCCAAATATCCTCTCCTCTCCACCTATTCCCTCTTTCCCCATCCTTTCATTTGATCTCCTTTTTTGTACGTGCTTCACTCTCTCTTAGGCCCACCTTTTTGAACCTCTATTATTTATCGGCAGCTTCACCATCACCATTCCAGTTCCATAATTCCCACATTTCTCTGATGACCCACAACACAACCGTTCAACATGAACATCGATCCCTTAACTTAAGGTCCCCTGTTGTTCCATATAGTTTCAAGTGAGAGGGAAAGGTAAGGCCGTTGATGTCATAGTTCATTGAACTAATTAGTTTACAAATATCCGTCAACCACATGTCAACTCTTTTCTTATTTTGCTTTTTTGTCTTTTCTTGTTTCCTTTTTTGATTTGGATTTTGGGGGGTATAGACAGGCCAAGTGGCCATCTCAATATTTGTGCTTCTGTAATCTAAGAATCTAACTAGTGTTACTTTATTCAGTCCAGTCCATGTGGCTAAAAGGAGATTATTTTATTTAATGAGTTATTGAAATCCTGTTTTTGCAGATTACATTGATTATTATTATTATAAAAAGAGAAGAAAGAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01852.22	START	265	477	1.90E-41
PF00046.32	Homeodomain	65	120	3.30E-18

Gene family

Gene family	Subfamily
Transcription Factors Family	HB-WOX
Transcription Factors Family	Others

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function
GO:0003677	DNA binding	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR023393	START-like domain superfamily
IPR002913	START domain
IPR009057	Homeobox-like domain superfamily
IPR042160	Homeobox-leucine zipper protein GLABRA2/ANL2/PDF2/ATML1-like
IPR017970	Homeobox, conserved site
IPR001356	Homeobox domain

trEMBL

trEMBL term	Description
A0A8B8M195	_

SwissProt

SwissProt term	Description
PDF2_ARATH	Homeobox-leucine zipper protein PROTODERMAL FACTOR 2

KEGG

KO	Description	Enzyme
K09338	homeobox-leucine zipper protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G04890	protodermal factor 2
Medicago sativa L.	MsG0480020315.01.T01	_
Oryza sativa L.	LOC_Os08g08820.2	homeobox and START domains containing protein, putative, expressed
Cucumis sativus L.	Csa001281	_
Glycyrrhiza uralensis Fisch.	Glyur000295s00015284.1	_
Codonopsis lanceolata	Cl_chr03_24910T	_
Arachis hypogaea L.	AH05G14030.2	Homeobox-leucine zipper protein MERISTEM L1 like

Expression pattern