Gene detail

Detail information of Am03G034210.1 Annotation

Gene ID	Annotation
Am03G034210.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G034210.1	mRNA	Chr03	171265616	171267582	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM03G034210.1
CTCTATATATCTTAGCTTATATCGAGGATCAAAGATAACACCAAAATAAATATATGGGTTTGTGTTTTCAACTTTCCCCCAATACTTATCGTATTTTTTTTCATTTCAACACCCATGGTAGCCAAAACAGTGTTCAGATTCATTCTAGTGTTATTTAGCTCATTATGGACAGAAGATAGTTGGTGGAATGCGGTGTGCAAACTCACCTCTTGTGATAAAGAAAAAAGCTTTGTTGCATCAAAGAAAATCTTCAAGAAACAACTAAATGCCCTAACCTTTTCCCAATCAGTGCTTGTTGGGATACCTTCCGGCCCAAACCACTCCTTATAACTAGTTTCTTCATCTTCCAACTTATCAAAGATTGCTTGATACTTTTCAGCAACGGGGAGCATCAAATAGGTCGAGTTCCACCTTGTTTGAACATCAAGACACAATAGTTTCTGACAAACAATTCCAGAAAACTCTACCAACTCCTTAAACTTGGCTGTCCTATGGGATGAAGACCTAACATATCTCACAGCATTCCTAATGTTACATATGGATTGATGCATTTCTCTTAAGCCATCATTAACAACCAGGTTTAGGATATGAGCGCAACACCTCACATGAAGGAACATCCCATCAAGAAGTAATCCACTCATGTTCTTCAACTTCTTTTTAAGGTATGAAACAACAACATCATTCGACGATGCATTATCTACAGTTATGGTTGAAGCATTCCTAAGTCCCCAATCCCTTAAAACCTCCTCAATCTTCCTACCAACAGTCTCACCTTTGTGATTTGGGATTACAGCAAAGCTTATTATCCATTTTGATAATTCAAACCATTATCTATGAAACGAGCAGTGAGGGTTAAGTAGTTAAGATTCTGGATAGAAGTCCAGCAGACAGTTGTGAGAGCTACCCTACAACAATCAGACTTAAAGAAGGCTTTTAGTCTCTCTTTTTCATGAAAGTGCATATCTAGGCAATCTCTAGCAACAGTACACCTAGATGGGATAGTGAATTGAGGCTGCAAATGTCTAACAAAGTGCTTAAACCCCTCACCTTCTACCACTCTAAAAGGCTGCTCATCAACAATAACAAAGGTGGCTAAAGCTTTCCTACAAGCTTTAACATTAAACCTAGTGCTTGCTAATATCATATTAGATCCCTCCCCCACACTAGTAAAAGCAAGTGCAGTTTGTTTGGGGTCTTTGGAGATAGCATGTGAAATTCCGGGACAAACATCTATGTGGTATTTCATATTGGTGGTACCATGTGTCCTAGAGTCACACAAATACCTTATGTGACAATGTTTACATGCCGCAGTAGGCACTGGTTCATCAGGAAGTACACTAAAATGGTCTCACGCAACAGAGGTTCGCCTAGGACCATTTGCATTGGCCCTCCTCTTCTTAGGAACATTAGAAACATTACCAACATCAATAGAAACATTAGAAACATTACCAACAGCTGGTTGTTCAGTTGCAGCAGTAGCTTCAGTTGTTAAGAGGGACAGGGGCATTAGAAACATTACCAACAGCTGGTTGTTCAGTTGCAGCAGTAGCTTCAGTTGTTAAGAGTATTATTGGTGTAGAAGGATCCATCCCTGAAAAAATTATCAACAAAAGAGTATTATAATTATAATTATCAACAAAAGAGTATTAAACAATAACGAGTTTCTACTGAAAATACCTCCTATTCAGAAGCTTATAAACAAATGTAGTATATTATTTTATTAACACTCAGACTATTGCTTTCCAACTAGTTATGTTCACTTTCAGACTTTGAGTATTTATTATACTTTCTTAAAACTTGTTACTTATATTTTAAATCCATCAACAAGAAACCAAACACGATGGAAAAATAAGACAAGACCCAGATGGATTTAAAGGCTTCACATAGCATAAGAATCCTCAAAATCAACTTGCAAAAGGAAGCACACTGGTCGAGAAGTAAACACAAATAAACCAAAATGAATACACATACAAGCAAATTGTTTTGTACTTTTTTAGTTGCTGCACAAGTCCTTTGCTCCACAAGTCAGCAGCTAATCCTTTGTTCCACAACTCAGCAGCTCTCCAAGATACATCAAAATATAACAAAAATAAATAGTCAGAAAACATCAAACACTTAACACAATAAAGGGACTCAGCCACTAGTAACTAGTAAGCCAACATTATAATTTGAAAACCCTAAACCAGAACCCTAATTAAAAAAAAACAAATCAGAAACCACAACAACGAGAACACATAAACATCCACCTAGCCTAAGAAAACCTTCAAAACCGAAAACCCTAAACCAGAACAACCCCAATCTCAAAAAATGAAGAGAAGCTGTAAGCCTGAGCTAAGATTATGAAATAATGAGAAAATAACAAAACCCTAACAGAGAAATAAGGATCCTTACCGTTGTTGAAGCTTTCATCCATGACGAAGGACATGATGATGATGAAGTCTGACGAGATAATGACGAAGGACGAGATGATGATGAAGTTTGACGAGATGAGGATGATGATGAAGTTTGACGAGATGAGATGATGAAGATTCGAGGAAGAAGGGTGGGAAACAGCGCTGTGGCTGCGCTGCGCCTGTGTGTGAGTACTGAGAGACGAGAGTGAGTGTGCTCTGTGAGGGTTAGAAAAGAGGAAACAGATGTGTGTGAAATGAATGAGAAAAATAGGGTTCAGTTTTGTTAAGTAGTGAAAGTGTACCGCGTTAAACGACGTCGCCTAATTATATAATTGGTTATTTTACTTACTTTGCACACGGGCGGGTCTGGTTTACCTCAGTGGTTTTTTGTTCAACTGAACCCGCCCAATTTAACCCAATTAAAACCAATTGTACCCAATTTAATCCAATTAAAACCAATTGGACCCATTTTTAGACACGGTTATTGTCCAGGCGTAGGCAGAAATAAGAGAAGATCTGGGTTAGGGGTTTACCTTTTTAATTATAAATAGAAGACACTTTATAGGCAGTAAAAAGAAAGGAAGAAAATCTTATCCAAAACCAAATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03931.18	Skp1_POZ	6	63	3.40E-19
PF01466.22	Skp1	99	125	2.50E-11

Gene family

Gene family	Subfamily
Ubiquitin Family	Skp1
Ubiquitin Family	Skp1

Gene Ontology

GO term	Description	Category
GO:0016301	kinase activity	Molecular Function
GO:0005737	cytoplasm	Cellular Component
GO:0016874	ligase activity	Molecular Function
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Biological Process
GO:0016567	protein ubiquitination	Biological Process

InterPro

InterPro term	Description
IPR001232	S-phase kinase-associated protein 1-like
IPR016897	S-phase kinase-associated protein 1
IPR036296	SKP1-like, dimerisation domain superfamily
IPR011333	SKP1/BTB/POZ domain superfamily
IPR016073	SKP1 component, POZ domain
IPR016072	SKP1 component, dimerisation

trEMBL

trEMBL term	Description
Q155U3	_

SwissProt

SwissProt term	Description
SKP1B_ARATH	SKP1-like protein 1B

KEGG

KO	Description	Enzyme
K03094	S-phase kinase-associated protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G42190	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein
Medicago sativa L.	MsG0180002489.01.T01	_
Oryza sativa L.	LOC_Os09g36830.1	Skp1 family, dimerisation domain containing protein, expressed
Cucumis sativus L.	Csa011602	_
Glycyrrhiza uralensis Fisch.	Glyur000232s00013749.2	_
Codonopsis lanceolata	Cl_chr07_21500T	_
Arachis hypogaea L.	AH05G02620.1	SKP1-like protein 1B like

Expression pattern