Gene detail

Detail information of Am03G033880.1 Annotation

Gene ID	Annotation
Am03G033880.1	cyclic nucleotide gated channel 8

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G033880.1	mRNA	Chr03	169498734	169502984	+

Sequences

CDS:

>Am03G033880.1
ATGGGAGGTGTTGTTAAAGATGAACAACCTGAAGATGAAAATTCACAATATATTGGAGGCCAAAAGGAGAAATTTATGAGGTTGGATTCCAATTCATCAACTGCATCTAGCTCTAGTGGTATGAAGAGATTGCGATTTAACTTAGATTCTATACCTTTACCTATTCCTGGTCGTAAGAGAAAAAATGCATCGAAATCGTTAAGGATAGGAGTGAAGAGGGGATCAGATGGACTAAGAACAATAGGAAGATCACTGATCAGAAGCGGAGTCACTTGGGCAGTATTTCCAGAAGATCTTAAAGGGTCGGAGAGAAGAGTATTTGATCCTCAAGATAAGAATCTTCTTTATTGGAATAAGTTTTTCGAGATTCTATGCATTATTTCTATAGCTTGTGATCCCTTATTCTTTTACCTTCCATACTTCAACCACAAATCATTTTGCTTAGCTATAGATGATAGGCTAGCGAGATCTGCTATTGTATTGAGATCAATATGTGATGCCATTTATTTCATTCGTATAATTTTCCAATTCCGAACCGCTTTTATCGCGCCTTCATCGCGAGTATTTGGAAGAGGCGAACTTGTCATAGATCCTAAGGAGATTGCCAAGAAGTATTTAAAACGTTCGTTCATTATTGACTTCCTTTCTATACTTCCTTTTCCACAGGTTATAGTGATTAAATATCTTAATAGAGAAGGAGGACGTTTGGAGGTATTGGATACAAAAAGAAAACTGCTAAGATATGTGATTTTGCAGTATTTTCCAAGATTTCTACGCTTTATACCTTTGGCTTCACAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAAAATGCATTCCTTGGTGCTATGTACTATTTGATTTGGTATATGCTTGCTAGCCATATAACAGGTTCTGCATGGTACTTACTAGCAGTAGAACGTAATGACACATGCTGGAAGAATGCGTGTAAAGAATATGAGGGATGCAATACACAGTTCTTGTACTGTAATAGTGAAAATAAGCATTTGAGAGGGTATGCAGATTGGAAAAGAGTGAGCAAGTCTATTCTTCAAAGTAAATGCTCTCTTGAGGATGATAACTCTGAGTTTAATTATGGAATCTATTCTCAAGCTATTTCCTCTCATATTGTTGCTTCCATTGAAGTCTTTCCTAAATTTTGTTACTGTTTATGGTGGGGCCTTCAGAACTTGAGTACACTTGGTCAAGGGCTTCTAACAAGTACCTACCCCGGAGAGGTTATGTTCTCCATAGTCATAGCTATTATGGGCCTTGTCCTTTTTGCTCTTCTCATTGGAAACATGCAGACATATCTTCAATCAATGTCAATTCGTCTTGATGAAATGAGGATCAAAAGACGTGACTCTGAGCAATGGATGCATCATAGATTGCTTCCTCCAGAATTAAGGGAAAAAGTTAGGCGCTATGATCAATACAAATGGTTGAACACTAGAGGAGTAGATGAAGAAAGCTTAGTTCAAAGTCTTCCAAAAGATCTCAGAAGAGATATCAAACGTCATCTTTGTTTGAATTTGGTTAGAAGGGTTCCTCTTTTTGCTAACATGGATGAAAGGTTACTAGATGCAATATGTGAAAGATTGAAACCAAGTTTATATACAGAAGGAACATACCTAGTAAGAGAAGGTGACCCAGTTGCTGAGATGTTATTCATAATACGTGGTCATTTAGAAAGTGTTACAACAGATGGTGGAAGAAGTGGATTTTTCAACAAAGGAGATTTAAAAGAAGGTGATTTTTGTGGAGAAGAGTTATTAACATGGGCATTAGATCCAAAATCAGCAGCTAATTATCCATCATCAACTAGAACAGTGAAAGCTATGAATGAAGTTGAAGCATTTGCTTTAGAAGCTGAAGAGTTGAAATTTGTTGCGTCACAATTTAGACATATTCATAGTAGACAAGTTCAACATACTTTTCGATTTTATTCCCAACAATGGAGAACTTGGGCTGCTACTTATATTCAAGCTGCTTGGAGGAAACATTTGAAGAGAAAACGACGAAAGGAAGAAGCGGAAGAAGAAGAAGAGTCGAGTGAATCGGATGATGATGATGATGATGATGGTAGTGGTGGTGATTCTGCGAGAGCTTTGATTGCTCCGCGTGCATCGGTGTTTGGACTTGGTTCTACCTTTTATGCTTCTCGATTCGCCGCTAATGCCCTTCGTGGTCATAGGCTTCGAGTTTCGAGTTCTAGGGACATGGCCAAAATTCAAAAGCCACCTGAACCAGACTTTAGTGTTCTTCAAGATGAAGATTAA

Protein:

Promoter(3k):

>AM03G033880.1
AATAGCAATTTTTGGCTAATGCAACCATGTATACTAAGTTTCAAGAAGTGTTTTATAGTATGGTTTTTATAAATAACAACTGATGAAGTATTATCATTCCCTTTGAGTATGCCACTAATTTCCCTCAAAGATTAATTTAGTTTTGGCTACAAGACTAGCTAGCATATGCATGTATGAGACTATAATTGCATTTAGTTATGGTTTTGGTCTCCGTTTTCTGGAAGTTGGATTCCTCATGTTACTTTGAATATTGTTTGATTTTGCTAAATTACTCGCGATTTCAAATTGGAAGTAATCTTGTTTTAAAACATAAATTCTGAACATGAAGGGTTAAAAACGTAAAATGCGGAACAGTTCTAGGAACATTAGAAGACTATCAAATATACATTTTGGATTTTAGTTCCAAGTTATATTATTACACAGGGGCATCCACCAGCTAAGTTTTTAATCCAAATCTATTGGCTAAACAGAGCTGGCTTCATTATTCAATAGCCTTCTGATATGCCTAACTCATTTCTCCTCCAGCTGATTCAAAAGCATTTTATAGTCTTGATGATTGGCTCTATTGCAACAAGTATGTTGACATTGAGAATATTAATAAGCGACTAGTTGTCTAATTTTCAATTGAATTCCATCCAAATCCTCCTCATTCGTGCTAACATTAATATGAGGTGGATTTGGTATTCATCCAAGACAAACATGTATATTTTTATTTTTTATTAATGTTAGCACGAATAACATTAGTATGAGGATGAATACCATAATTTTGACAACATTTTTGGTGCTCATTTTGTCACTGAGAATAATTAATATTAAAATAAATTTCTAATATTTACAAATAGGGATAATGTTAGTCCCTCTGTTGTTGTTGAAATTCAGTCGTTTGAGTGCTGACATATCATGTTAATTTGCTGACATTATTGTTAGGGTCGTTTATGTGGTCATGTAAGTGAGTCAAATTTTAACTGACCCATTTAAGTCCCTTACATTTCTATTTTCTAGTTTTGGGATAATATGTATGGTCTCTCGTGCCTAACTTATATTGACCCCGTCTTTTTTACCATTTGAACCTTAACCCCTATTTTTAAAGCTCTAATCTCATTCTATCAGAGCAATCTAGCACCACAAGCTTCAATTTCGTTGTTTTTTGTGCATATCTCAATCTCATGTTGGGTCCTCTTTATCAAACTATGAATAAAAATCAGAGCCATGTGCATTAATGACCGACAATGGAATTAAAATTATGTAGTATTTTGGTATACTGTTTATTGCATGAATATAAGTTCTTAATTAGCATAGAACTATTAAGTAATCAACATTTTGCATGAATTGGCACTGAATTGGCATTTCCCATAAATTGGACACTCAAATGGGATAGAATTGCCACTCTGATTGAATTAGCATAGGCTTATTTGTCCACTAATATTTTGAATGGTTTTATGCTTCAGTGATCTCAAGAAGTTTGTCCACTAATAAGACCACACATAAGAGCAATCTAGCACCAACGTCGCTCATCATGAAATTTGCGCAAAAAATTGATGAAATTTAAGCTAGCGATGCTCGATTACTATGGTAGAATGGGATTTGAGCTTTAAAAATGGATATTAGGGTTCAAATGGGAAAGAAGATGAGGTCAATATAAGTCGGGCATGAGGGACCAATTGGGTCCCTTCCAATTTGACTCACTTAGATGCCCACATACGCGACACTAAAGGCCACATAAGCAAACCAACGTGACATCTCAGCACTCAAACAGATGGATTTCAATGGAAACTAAGAGATGGACTAACGTGTCCCATGTTTGTAGATGTCAAAGACTTATTTTGATATTGATTATTCTCGAAGACCAAATTGAGCACCAAAATTTTTATCCCGGACAAAATTGGGATTCACTCTAAAATCAACAAAGTTATGAATCCAAAGACTTTTTAGAATAATTTTATATTAAATTTGCAGAATACAATAACCACTCTTGAGTTAATAATGAGAATTTTTTTTGGTTACAAAGGAGAAAAATGTAAAAACCAAGGCCTAACAAAGGAACATCCTTGAGCATCAGCTTGTAGCAGCTGCAACATAGCCATGGGAGGAGCATCCAGAATCACATGAGGCAGCGAGTCTGTTGTACCAAGTTTGGCTCCATAGTCTGGACAAAAGTTGACTTCTCTAAACACATGTTGAAGCTTCACTTCCCACAACTGAGCAAGCAGATTCCGAACAAAAGCAACATCATTGCCATGCTTATGATACAACACATCTGCAGTGTCGATTAGCTTCATGGTATTCAAAGAGAGTTAATAATGAGAATATCTTAATAGTTAGAAATATTTCTTTTTAAAAAATTTATTCAAACATAGTTGACATCATTTTAATGCACTTACAATGGGAATTTAAACCTCCAAATACTTAAGGATAATAATTAATCATCCAGGTAAACTTAAAAATTTCCTTGTGAATAAATAAAGGCGTTTATGGCCGGTGCATATGGAAAGACATCGGTTGGGAGAGGTCAACCCCTTAAATGTATCTCCATTACTTCGAAGGATTAGTCTTTGCAATTGTGCATGGAGGATACTTTGATTTACCAAAAAGGTAAAAACGTTTATATTTAGAGGTAAAGATCATCATTGCATTATGTATTTAGGTTAAAGTAAAAACTACAGATATCACAGAAATTGGACACTGTATTTCTACACAAAAAAAGAATGTTTGGCAGCTATTTTATTTTCTAAGATTAAAAAAACAAAAGTTGAGTCATGTTTGAAAACAAAAGCAAAACCAAAGTGCTCATATGGCGGGGACACATGTAACAACTATAACGGTTTATTGTTCCTAAATTTATTCAAACATGTTTTCTCTCTATTCCAATCTCTTTTTCAGATCTTGTTATTCCTCTTCTGATCCCAATATACCATATTTTTGTACAATCAATGCCTTCAACATCATGACAGTAAGTTTTTACATAGATTTTCTGTTCATGTTTATTTAGAGGAAATGAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00520.34	Ion_trans	116	442	5.90E-35
PF00027.32	cNMP_binding	538	627	4.20E-07

Gene family

Gene family	Subfamily
Transporter family	VIC

Gene Ontology

GO term	Description	Category
GO:0022832	voltage-gated channel activity	Molecular Function
GO:0015079	potassium ion transmembrane transporter activity	Molecular Function
GO:0009860	pollen tube growth	Biological Process
GO:0004692	cGMP-dependent protein kinase activity	Molecular Function
GO:0005524	ATP binding	Molecular Function

InterPro

InterPro term	Description
IPR014710	RmlC-like jelly roll fold
IPR003938	Potassium channel, voltage-dependent, EAG/ELK/ERG
IPR000048	IQ motif, EF-hand binding site
IPR005821	Ion transport domain
IPR018490	Cyclic nucleotide-binding domain superfamily
IPR000595	Cyclic nucleotide-binding domain

trEMBL

trEMBL term	Description
A0AAN9QZX9	_

SwissProt

SwissProt term	Description
CNGC8_ARATH	Putative cyclic nucleotide-gated ion channel 8

KEGG

KO	Description	Enzyme
K05391	cyclic nucleotide gated channel, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G19780	cyclic nucleotide gated channel 8
Medicago sativa L.	MsG0480018204.01.T01	_
Oryza sativa L.	LOC_Os03g44440.1	cyclic nucleotide-gated ion channel, putative, expressed
Cucumis sativus L.	Csa017433	_
Glycyrrhiza uralensis Fisch.	Glyur001649s00037650.1	_
Codonopsis lanceolata	Cl_chr08_27140T	_
Arachis hypogaea L.	AH15G07610.1	Putative cyclic nucleotide-gated ion channel 8 like

Expression pattern