Gene detail

Detail information of Am03G033450.1 Annotation

Gene ID	Annotation
Am03G033450.1	leo1-like family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G033450.1	mRNA	Chr03	166709940	166717756	+

Sequences

CDS:

>Am03G033450.1
ATGGGAGGAGAAGAAAAGCGTCATCAGATGATGCAAAATCTCTTCGGTGATCAATCCGAAGAAGAAGAAGAACTCGATTCCGAGCACGAATCAAATCCTCAACATAATTACGCTTCCGATGAAGGAGAGGGAGGGGTAGGTAACGAAGGAGAACGAGAAGAAGGAGAAGGAGAAGTGGAAGGACAAGGTGAAGTAGAAATAGAAAGCGAAGGTGAAGGCGAAGATGTTCGTGAGGGAAACGCTGGAGAAAGTGAAGGTGAGAGAGAGCAGAGTTCGCAGGAGGTGGAAGTGGAAGAGGTTGGTGATCAGAGAGAAGAGAGTGAAGGTAGGGATACTGATAGTGATGCTAAAGATGAATATAATCAGAGAGTTGTTACTAGCAAGCGTAGGGATGTTGTTGAAAGTGGATCTGAAAGGTCAGAGGAAAATCAATATGCTGAAAATGATGATGAAGTTGATGTAGCTAGAAGCCCTAGTGGGTCACCCGGAGACGACAAAGATCATACTCGTGATTTGCATTCGGCCCCTGAAATTCGTGACGTATTTGGTGATTTAGACGACGAAGAGGAGGATATGGGGTATGCAGTTCACAAGGACATGGAACGAGATTCAAATAGATATCCTGCGGAGGAGGAAGGCAGTTATGGAAAGAGCCTGAGACCAGAGGATATACTTGCTGATGAAGATCGTCAGTATGAATCAGAGGAGGAAAACTTTGAAATGAAAACCAAAGAGAAGCCACTTGGCCCCCCATTGGAGTTAGAGATTCCACTAAGACCACCACCAGCTCTTCCAGATAAGATGCACATGTTTAAAGTTTCCAATATCATGGGCGTTGATCCAAAACCATTTGATCCTAAAACATATGTGGAAGAGGATGCCTTTGTAACTGATGAATCTGGAAACAAGAAGCGTATACGCTTGGAGAACAATATTGTGCGTTGGAGGAAGGTCAGAAATCCTGATGGCACAACATCTATTGAAAGCAACGCACGCTTCGTAAAGTGGTCTGATGGCAGCATGCAGTTGCTAATTGGGAATGAAGTTCTTGACATATCAGTGCAAGATGCACAGCATGAGCAAGCACATCTTTTCCTTAGACATGGAAAGGGAATCCTTCAATCACAAGGAAGGTTGGAGAGGAAAATGAAGTTTATGCCATCTTCATTGTCATCAAATTCTCATCGGTTGTTGACTGCTATTGTTGACTCAAGGCATAGGAAGGTGTATAAGGTTAAAAACTGCATTACTGACATCGATCCTGAGAGGGAAAAAGAAGAAAAGGAGAAGGCTGAAAGTCAAACAATCAGGGCTAATGTACTTCTTAACCGTAAGCGTGAAAAGGTGAGCCGGAAATATACTCCAGCTTTGGATAGGAGACGTCAACTTTCTCCTGGGTTTTTGGAGGATGCTTTGGAAGAGGATGATGAAGCAGATTATTATGATACTCATCATTCACAGCGCCGCTTTCATGAAGATTTGGAAGCAGAAGCCCGGGCAGAGAAACGGATTATGAATGCTAAAAAGGCACAGGGATCGAAAGATGCCCCTCGTAAGTCGTCTTTCCCACATGCCAAGTCCTCACGGCATACAGTGGGTTACCCAGATGATGAGAGAGAGGAGTCTGAGTACGAAACTGATGAAGAGGAAGAGGAAAGGCCACGCAAAAGGGACGAGGATACTGAGCCAGAGTATGAGGATTCGGAAGAAGAAGCATATGAAGAAACAGCACAAGCTAATGATGCATCGGAGGAGGAAGAGGAGGAACCAAAGCATAAGAGTAAGGACTTTAAAAGTAATGCCAAAAGAAAGGGATTGGAATCTGATGAGGACTCTCCTCCAAGAAAACCAACAGCCCATCGGCGAATGGCTGTTGTGTATGACAGTGATGATGAATAA

Protein:

Promoter(3k):

>AM03G033450.1
ATTTAATCAAAACACTGATTCTCAACTATCTATCTATCAACTATAAGCTATCTATTTATAAATATTATTTTATCTTTTTTTTTTAGTTTTAACGGGTAAACATTACATATTGTTGATATAATTTCATTATTTTTTATTTCTTACAGAGAAATGTAATACGCTGTCGATATAATCATTTTCATATTTGTTTTCATGAATGACTTTATTTCTTATAAATTGACATTTTTCTTAAGCCGTGAAAGGACTAGATATTGTTGAAAAACTTATTTTTTAGTTTCAACGGGTAAATATTCCATGTTGTTGCTATAGTTTCATTACTATTAACTTTTTATGATGGAACGTTACACATTGTAAAATAATTATTTTATATTCTGTATTTGAGATACAACGGAGAAATATTACATGTTGTTAATATAATTTTATTATTGATAAAATGTATTTGGTGACGATCAAAAATGTCAAAAGAAAAGAATATTCCAAAGTTATGAAATTTCATTTCTTAATAACTTGAAAGATTTATTGTAATTGAATTCTGTCTAAGTCTATTTATACAAAGAATATGATGTTACCCGTGCATATGCACGGGTATACTTCTAGTATTAACATAAAAATTAGGGTGTTCCATATAGTATGTTAACCGGTAGTATATCTGTGCATGTGCACAAGTGTTGTCGTGCTCTTTCTATGAATGCTCTCAGAGATATTTAACACTGTTGCATGCCCAAGACCGGATTCGAACCCAAGACCCTGGTTAAGTTGGAAGACCCCTACCATCTCATCCAAGTGCTCTTGGGTGACTCAGACTAGAATTTAATTAGTCTGATTATTATCTCGTGAAAATCAAGATAAATTTAAAGTAGATAAAAAAAGAGTTTCAAATAGTAATAATTTTCAAATAGTAATATAATGCATACAATATTTCACTTCGGTTAAGAAAAAATAACTAATTTATGTTTTGATGGAAAATACACATAATTCTGAAAAAGTTTGCAAAAGTGATATTTCTGGCGAGTGTGGATAAATTTGAAAAATATACCAAGGTCCTCTTTGTTGAGCCAAAATCTCTCAAGTAGTTTTGGTGGTTAACAATATTTTTTTATGACAAGCTTAAGTTCTCTAATTTTATATGTACCTAAGGTGTGAGGAGTAGATGTACCCTTAGTTTTCGGGTGAGCCACTATAATTTATGTGTTAATTACTGCTTTCTCTAACTTTATTTTGCATTACACTTAAAACTCTTTGTTATAGAGAAGATTTTGAAAACTAGAAAGACTGTGCATCAAAACCTTCTTAACATAACAGAGTTTTCTCAAACACAATTTTACAACCCTTCTCAAGTCTTTCTAATTGTTAAAATTGAGTAATCTTCTTAAGTTTCTTACTTAAGTCACTATCTCTTGATCACACACATGGGCACACAATAAAAACATATTAGTAAAAATACTCTTTCTTCTCATCTTATCTTGTCTTGAGAAGGCAGACTCAAGTGAGCTTTCTCAACTCAAAGTACTAACTAGTTAAGAAGGTTGTTATATTTTAGTCTTCTTATGAGCAACAAACTAGTCTCACGTGGACATAAAACCTAAAGATAAAGCATCAACTCCATCTCATGTAGGCATAAAACCAATCCCGTGGAGCACCAATCACATGTTATATATGTGGCACTCACACGGGAGGATCTTCTTAGGAGCCGGAAGAGGCCTCAATCTCAAAAATAAATTTTTAAAATACATATATGCAAAAAATTTAATGTTAGTATTAGATTATATATATTACAACGATCACAAAATATTCCAATGCTTGCTGTAGCCCAGTGGTGTGGTGCCTTTTTTATATCACTTAAGACTTAGGTTCGATCCCTTTCTGTATTGGTTAATATTGAATATTACAATATAACCAATACAACGGACAAAATAGTTGTCCTTTTCTAAGCGAAATACTATATACATTACTTCATAAATTGCGCCCCTTAAATTGTTTACTCAAGATCTGCCTCTGGGCACTGACACAATTTGTGGAGAACAATCTTCAATCTTTGGAAAGTATATTCGTGGAGCACATACTTCAATTCGCGGTAATAATTGTAGAGAACATAACTCAATCTTATGTTGTCAGTCAACACACATCGATCAATGTCATGTTATATACCACATACATCCTCTATAAGAGTACATGGCAATATCAACAACTCATCACAATCCTAACTTTTGAAAATCTTATAAAAAACCTAACATCACACTAGCATCATTTAATCATATATCATCACCATTCATAACCAATCATACAACACCATATCACAAATTACGAAATGTTAATAAAGAGTAAGAGAGGAGACTCGTAAGCTATTGACCAGTGTTAAATTTGTTATTGTGTGCATTGTGGTACCTTTGTGCATGTGATTTGTCGGTTATAACTACAAAGTGTGATCCGCGGAGAGAGAGAGAGAGAGAGAGTGTGAGAGAGAATGTAAATGCAGAACAGAGATCAAATACAATGTAATAATAACTAATAAGATCATACAGACTTATTTAATCGAATGATCAAATAGAGTGGTAAATTGGTGAGAGGCTCAATTGGACTCTCATCCAAGAAGCCATCATTATCACATTTACAAAATCAATAGAATGAAAATCAATTTTTATCCACACAAAACCAAACACACTAATTGTCGCTCACTGTTGGTTACTTTGGCAATTTCAGCGACATGGATACATCGTCTCTCAGTTCGAACCCGAGTCTGAGCTGTGGTGGTGTGTGTGCGTGATGTTTATTGAGTAGACAAAAAAACGCCCTAACTTTTTTTATCAAATAGAAAAAACACACTAATTTGTTAAAAGAACCTAACAAAATTCGTTAATATCTTATTTAATACTCCTATATAAACTGTGGTTTCGTTTTCATGTAGCACTAGCAAACGCAGTTTTCTCGCAACGGTGCTGGCGAAGAAACAAACCCCTCACTCTCAACAGAGCGAGACACCGAAAGAGAAAGCTCAAAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04004.16	Leo1	269	429	7.50E-47

Gene family

Gene family	Subfamily
Epigenetic Regulators	PAFB1

Gene Ontology

GO term	Description	Category
GO:1990269	RNA polymerase II C-terminal domain phosphoserine binding	Molecular Function
GO:0006368	transcription elongation by RNA polymerase II	Biological Process
GO:0032968	positive regulation of transcription elongation by RNA polymerase II	Biological Process
GO:0009910	negative regulation of flower development	Biological Process
GO:0010048	vernalization response	Biological Process

InterPro

InterPro term	Description
IPR007149	Leo1-like protein

trEMBL

trEMBL term	Description
A0A8B8LMA7	_

SwissProt

SwissProt term	Description
VIP4_ARATH	Protein LEO1 homolog

KEGG

KO	Description	Enzyme
K15177	RNA polymerase-associated protein LEO1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G61150	leo1-like family protein
Medicago sativa L.	MsG0580029727.01.T01	_
Oryza sativa L.	LOC_Os12g38970.1	VIP4, putative, expressed
Cucumis sativus L.	Csa004575	_
Glycyrrhiza uralensis Fisch.	Glyur000775s00025726.1	_
Codonopsis lanceolata	Cl_chr02_62910T	_
Arachis hypogaea L.	AH11G24390.1	Protein LEO1 homolog like

Expression pattern