Gene detail

Detail information of Am03G032360.1 Annotation

Gene ID	Annotation
Am03G032360.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G032360.1	mRNA	Chr03	156932567	156934620	-

Sequences

CDS:

>Am03G032360.1
ATGAATAAGGCGCTTCGTTTCTATCAAGATGGCGGAACCATCCCAATCTGCCTTTTCATCCTCTTCCTCATTTTCTCCGGCATCCCCTTCACCGGAGCACAATCCGTCAACGACAACCAAACTGATCCCTATTACAACCGTGTAAGCCCTTCCATGGCCATAATAATCGTGATTGTAATCGCTGCTCTCTTTCTCCTTGGCTTTTTCTCCATTTACCTACGTCACTGTTCCGATTCCTCTTCCAACAGTGTCCGCTTCATCACTGGTGCCGCCGGACGTTCACGAAGGGCTGCGCGTGGTCTTGACCCAGCAGTAATCGAGACGTTCCCTACTTTTGAATACTCAGTAGTGAAGATTCACAAGATTGGAAAAGGCGCGTTAGAGTGCGCCGTGTGTTTAAACGAGTTCGAGGAAACTGAAACGCTGCGTTTAATCCCAAAGTGTGACCACGTGTTTCACCCGGAGTGCATCGATGAGTGGCTCGGTTCACATACCACTTGCCCTGTTTGCCGAGCCAATCTTGTTCCCCAACCCGGCGAATCAGTGCATGGAATCCCAATACTGCAAGACATCGAGGCACAAAAGGATGTCGTTGAACCCGTTTCGGAACAGCAAAACGCAGATGCTGAGGCTAAAGAGTCAACAGAACCGGAAGTGTTGTGCTTCAACCAGACGCTGAATCGAAACCGTACGAGAGGGTCTCATTCCGGGAGGCCACGGAGGTTCCCGCGGTCTCACTCGACGGGACACTCTGTTGTTCAACCAGGTGAATGCACGGAACGTTTTACTTTGAGGTTGCCTGTGGAAGTGAGGAAACAAATATTACAGAATCCAGAATTGCATAGGGCTAGAAGTTTGGTTATTTTGCCAAGAGAAGGTAGTTCACGGCGTGGATATCGAACAGGTGGCGAGGGAAGTAGCAGAGGAAAGTCTATAAGGCGAGTGGACCGGGTTTCCAACTCAGACCGGTGGGTTTTTACAATGGCACCACCCTTCTTAGTAAGAGCGTCGTCGATTAGGTCCCCTAGGGTAGCTAATAGTGCCGGTGAAGGCACCTCTGCCCCAACAGTTTCTGCGGCGGCCGTAGAGTCGTCGCGCCCTCCAGTTTAA

Protein:

Promoter(3k):

>AM03G032360.1
CCTTCCACTCCTTTCGACTAAGAGCTTGCTCCAGACTCACTGGTTTTGCTTCAGCCATCAGTTCGAATTGAGTTAACTCTCCCTCTGCAGTTACAGCAGAATCTGGGATTGTGTCGAAATCATTTAGCTCTACTGATTTCTGCCTTTCCCTTTGCAACCTTCTGAGAGGTTCGACAGCAATGGGTTCTTTTGGCTCTTCAGTTTCGACCTCGTCGACATCCTGATCACTCTGATCATGAACTTCTTCTAAGTCCATTGTTGTCGGTTTTTCACAACATTCTTCGACAGTTCTCTTCAGGCAATGTTCTTCGACAACCTGCAATTCGACACACTTCTCTTCAGTCGAATTTGTATCTGGTTTCAACAACAGCAACTCTGGTTCTATAGTCGTCATGAATGATAATTCCTCATCATCGTTGCTGGCTATGTTGGAGGTATCCCCAGTATTTCGACTGGCCTGCCACACACACATAGCACAAGTATTTTGAGCATTACAAGTGTATCCACTTATACAAGTGTTCACACTGTTCTGCTCGCTACTTTCAGCAATTTCGTCAAGATGAGTGTTATCTTCAATCTCATCTTCGACTGCCATCAGCACTAGCCCATCTGAGTCGGAGTCTGTGTCACTGTCACTCGCAAAATTGGCTTCAGCATCTCTAGAAACCTTCTTGTTTTTACACCTGTTTCTATAATGCCCAAATTGCTGACAGTTGTAGCATTGCACTTTCGACAGGTCACCTTTCTTGTCGAAGGATCCCTTCTTCTTGTCGAAATCATTCTGCTTACTGCTTGATCCTTCTTCTCTACCTCTTTCGACCCTGTTACTTGCCTTCCAATTCTTCTTAGAGGAATATGAAAGTAAGGCTTGTTCAGTTTCTCTCTCTGAACTTCTCTGCCTTATCCTCAATTCATGTGCCTCTAAGGAACCCTGAAGTTCATCTAACTTCAATGTATCTAGGTCCTTGGATTCTTCAATGGCTGTAACAACGTAGTCGAATTTCTCGGTTAAGGATCGAAGCACCTTTTCGACCCTCTTCACTTCTTCGACAGTCTCACCATTTCCCCTCATTTGATTAGTTAATGCTACTAACCTCGTAATAAATTCGCCAATCGATTCTGCTTCTGACATCTTCAGGGCTTCGAACTGCTTTCTGAGCGACTGGAGTCGAATCTTCTTCAGTCTGTCTGCTCCGCCATACGAGCTCTTGAGGATGTCCCACGCTGCCTTTGCTGATTCACAGTCGATGATCAGGTTCAGGACATTCGAATCGACACACTGGTGAAGTAAAAATAGCCCTTTTCCGTCTCTCTTTCTCATCGCATTGTGGCTGTTTCTCACCGCTTCTGTGGCGTCATCTGCCACGGGTGGAACTCCATCGTTCACGATGTCAAGTACATCTTGATATCTGAACAACACCTTCATCTGCGAACACCATCTCTCAAAGTCCTTTCCATCGAAAATGGGGAGGCTCCCCGGAATACCTCCACCATAGTTATCTCTCGTTGCCATGGATCTTAAAGCTCTGATACCAGTTTGTTGGGGATTCTGCGGCGCAGCAGACAGGAGAGGGAAGGGAGAGCGACGACGCTAGAGAGAGGAAAGGGAGCAATAAAACAGTGAGACTGTAAAGTGATAGGATTAGGTTAAAAGGCAATCAAAAGCATTATTATTCACTAACTAGTGATCCCTATTTATACACAAAACCTAAAGTCAGGCCCAGGCCCATATTTCGACTAGGCCCAATATGCCAACTACTAACTACACCTTCTACTGTTACTAATTACACTGCAACTTCTACAGCTAACTATAACTTCGACTAGGTAGTATTTCGACAGCTACTTATTACAAATACAAGCAATACACAATTACAAGGTATATTCCAATAAACTAAACTTTGGAAACCTAACAAAGCATGGTCTTTGAAGACCAGTTGCAGAATTATCATGATCATCTAGTATTTCAAGAACACTTGACAGTACTGACATCCATGCCTTCAAACCATGGGAAGCATCATTTAATCAACAATACTTGTAATTTGTCAACAGCTTGCCTTGATGCTCCATGTCTAAGCAAGAGAGTTCTAAGTGAAAGTACTGCTCACCCCAACAAAAAACCAATCAGCATTGCTTTAATATCCAACAAAACCGTAACACAACAAAGCGCATAAACTAATAAAGAATTGCAATGAGAAAAGACTTCACCCCTCTTTTGAAGCATTTCATCAAACACCTTAGTTGCATCACTTAAGCAACATAAATCCCTATACACAACCAGCACAAAGGAATTTCCATACCAGAGTGTGCTCTGCAACAATTGTTAGAAAAAGGTGACTTATTTAGAAATCAAATTTTACCAAACCTTAAAATATAGCAGCGCGCTTTGTTTCCACGGCAAGCCTTGAGAACCTTGAGAACCAGAGTAAAAATTTTCTACCAATTTCCGGCAACACAAGCTGCTATATAAGACTTTTATGGTGGTAGTCGCGGCAACGAATCATATCTCCACGAACTTGTAGTTGAGAACTTGAAGGTAGTTGACGAGTGGGGAGGTAGATGACGAGTCATTCGTGGACGGTTCGCGAAACGTCTCTCGCTATATTAAGTATTTCCGTTAAAATAATTAACGAAACAAGAATTTGGCATTAATTAGGTACAAGCATCCAAACGAGATTGGTCAATTTTCTTCGGAAGTTTCCGCTACTTCTAGTTAATCTAAATGGTACACGCCGTCTCTGACCAACAAAAATTCAGATCGTATAGTGGACCCATTTATCAGTGACTTTGAGAGCTTTCTCCAATTACACGAAACCTTCCTAATCAACGGTCATAAACAAACACACCTTTTCTGCCTTCTCTCTCTCTCTATATATCACGCATAACTCTCTTTTCATTTCATTTCTAGCTCAGAGACTCATTCTCCTTCCTCACACACAGAGAAAGTGAGTCTTTCGTATCCTCAATTTCACTAACAAAGTAACAAACAAAGAAACACGCGCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	128	171	5.80E-14
PF13923.9	zf-C3HC4_2	128	170	3.70E-10
PF17123.8	zf-RING_11	128	157	9.70E-10
PF12678.10	zf-rbx1	137	171	5.10E-08
PF00097.28	zf-C3HC4	129	170	1.80E-06
PF14634.9	zf-RING_5	128	171	3.30E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0033591	response to L-ascorbic acid	Biological Process
GO:0009416	response to light stimulus	Biological Process
GO:0140096	catalytic activity, acting on a protein	Molecular Function
GO:0016567	protein ubiquitination	Biological Process
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

trEMBL

trEMBL term	Description
A0A1S3E279	_

SwissProt

SwissProt term	Description
ATL6_ARATH	E3 ubiquitin-protein ligase ATL6

KEGG

KO	Description	Enzyme
K10664	E3 ubiquitin-protein ligase ATL6/9/15/31/42/55	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G05200	RING/U-box superfamily protein
Medicago sativa L.	MsG0180004562.01.T01	_
Oryza sativa L.	LOC_Os09g29310.1	zinc finger, C3HC4 type domain containing protein, expressed
Cucumis sativus L.	Csa006715	_
Glycyrrhiza uralensis Fisch.	Glyur000001s00000131.1	_
Codonopsis lanceolata	Cl_chr05_25470T	_
Arachis hypogaea L.	AH19G19130.1	E3 ubiquitin-protein ligase ATL6 like

Expression pattern