| Gene ID | Annotation |
|---|---|
| Am03G030470.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am03G030470.1 | mRNA | Chr03 | 137144546 | 137148564 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF01535.23 | PPR | 174 | 203 | 1.40E-77 |
| PF01535.23 | PPR | 375 | 403 | 1.40E-77 |
| PF01535.23 | PPR | 476 | 506 | 1.40E-77 |
| PF13041.9 | PPR_2 | 72 | 116 | 3.00E-75 |
| PF13041.9 | PPR_2 | 170 | 219 | 3.00E-75 |
| PF13041.9 | PPR_2 | 271 | 314 | 3.00E-75 |
| PF13041.9 | PPR_2 | 374 | 420 | 3.00E-75 |
| PF13041.9 | PPR_2 | 474 | 520 | 3.00E-75 |
| PF13812.9 | PPR_3 | 474 | 522 | 4.90E-31 |
| PF20431.1 | E_motif | 592 | 654 | 3.70E-20 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0003723 | RNA binding | Molecular Function |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0005737 | cytoplasm | Cellular Component |
| GO:0016020 | membrane | Cellular Component |
| GO:0016071 | mRNA metabolic process | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046848 | E motif |
| trEMBL term | Description |
|---|---|
| A0A1S2Y533 | _ |
| SwissProt term | Description |
|---|---|
| PP398_ARATH | Pentatricopeptide repeat-containing protein At5g27110 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G27110 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0180000556.01.T01 | _ |
| Oryza sativa L. | LOC_Os04g43430.3 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa008058 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000960s00023962.1 | _ |
| Codonopsis lanceolata | Cl_chr02_61620T | _ |
| Arachis hypogaea L. | AH20G10120.1 | Pentatricopeptide repeat-containing protein At5g27110 like |