Gene detail

Detail information of Am03G030310.1 Annotation

Gene ID	Annotation
Am03G030310.1	cellulose synthase 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G030310.1	mRNA	Chr03	135336731	135348717	-

Sequences

CDS:

>Am03G030310.1
ATGGAGAAACATGGTGGAATAGCAACTGGGTCGCATGAAAGGAACGAACTTGTTCGAGTTAGAAACTGTTTGGATAGTGGGTCTAAACCCTTAAAGAATTTGAATGGTCAAATCTGTCAAATATGTGGTGACACTGTTGGATTAACAGCCACTGGTGATGTCTTTGTTGCTTGTCATGAGTGTGCCTTCCCTCTCTGTCATCGTTGTTATGAATATGAACGGAAAAATGTAAATCAATCTTGTCCCCAGTGCAAGACTAGATACAAAAGTCACAAAGAGAGTCCTCAAATGGAGGGAGATGATGATGAAGATGATGTTGATGAACTAGAGAATGAGCTCAAGTATGGTGAAAGCAATAATACCAAGATCGGATGGCAATGGGAAGAAGATGCTGACCTCTCTTCATCTTCAGGACATGACTCTCAAATACCAAATCCCCATCTGGCATATGGGAAGCCGATGTCGGGTGATATTCCATGTAATACTTCTGATGCTCAATCTGTTCGAACTACATCAGGCCATTTGGGTCAATCTGAAAAGCTTCATCCAAAGAAACCAGGTCTCGAGAGTGATGAGGAGATCAGAAGAGTGCCAGAGATGGGAGGTGAATCTGCTGGAACTTCAGCCTCTCGGCCAGGCACTGGTTCAACTGCTGGTCCTGAGCGTGTTCAGGGGGCAGGGGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCCGACAAGGAGAGCAAACGGCTAAAGAGGCTGCTGAGGAATAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACTTGAGTGAATTGGAAACAAGAGTCAATGATTTAGAGAAGAAGAATTCAGAGCTTAAAGAGAGACTTTCCACTTTACAGAATGAGAATCAAATGCTTAGACAAGTATGTGTCAATTTTGCATGTTTAATTACCATTACCAAATCACCATCATCATCATCATCATTGTATTCCATATGCTCTCTAAACATAACCAAGACATGA

Protein:

Promoter(3k):

>AM03G030310.1
ACCAAAAGCTGAGGAACCCAAGAAAAAGAAGCAGAAGGTCAAACACATTCCTGTGAGATCAAGCTCAAGGATCAAGAGTGGAGCAAAGAAAAAGTAAAGCTTTAATGCTGTTATTTTTAAATATACTTATATGTTCTGTTGCAATCCCACATGTATTAACCCCTCTCCCCATTTTGATGCACAATTACTTTTGAATCTCAACTTAGAGCAGTGGGGACACTGCTCATCTTTAAGTTGGGGGGGGGGGAGAGAAGCACTTTAAAATATTCTATATATGTGCTTATATGTTTTAGTAAGTATGTATGTCTGTTTTTTTTGTTATGTTTTGTTTACCTATATGTGTGTTAATTTCAAAATTTATGATGCAATCAACAAAGCTCCTTTTTGAAAATTCAGAAAACTGTTTTACAAAAACATTAGTTTTAGTTTGAGGTACATCAAATTGTTTTTATGTTCAAAGTTGGATTTGTGAGTTTTTGAAGCATGATCAGCTTAAATTATTTTTTACAAAACTTAGCCAAATGCATTCTTTGAATTGATTTTTAATGATGGAAGAAAGAAAAAGAAAAGAAGCCATGTTTTCCCCCAAATGACCAATTTTTATTATTACTTTAACACATCAAAACTGAGTTTTAAAAAGAACCCTGCTATTTGAAAAACTACCTGATGCAAGAGGATTTTCAGAAAACCAAGGTCAAAAACTAATTTTCAATAAAAATATAGAAGAGCATAAAGAAATAAGTTTGGGGGAGTTTCCATGAATACTAAGGCTGAGTATGAAAAACTTAGAATATTCAATACAATAGGTTACCAAAAACACTACAAAAGAGTTCAAAATGTTATAATTAGCTATACTTGCCTGAGTCACCAAAACTGAACCTGTTCCAATAGTGCATTTGGTTTGAAAAAGAAAAAGAAAAATTCAAAAAGAAAAAGGAGAAAGAAACAAACAAAAGAAAAAAGTATGCATAAGGAGGTTAGTGAGGAGGGCAGTATATGCTACAAGCCAGAAAATGTAGTATCAAGTACTTCTGCACAATACAAAAAGTTCAGTGCTTCTGCACTTCACAAAAATATTCAGTGCAACTGCACTAAGGTGCGTCTGCACCAAAGAAAGAACCACCAAAAATAAGAAAACTACATTGACTCAACAGTTTTGAAATACTCAATCAAAGTCCTTAGTTGTACTTAAAGTCCCCCAAGTCTTGAGGATGTTGTTAGTCTAGTCTATATTTTGAAACACATTTGTTTTGATCAAACGTGATCTAAAAATTTCCAAAAAGCTAAAGAGAAACTTTTTACTTAGTTTTGGAACTGATTGGATCTCAGTGGGGCACACACTCACACAAATGAGTTTTAATAAACTTTGGATGTTTGGGAATTCAAAGATACAAAAACAAAATGTTCTGAAAAATGAAGTTCATCAAATGCAAATCATTCTTTGAAAAGATATGAGCTGGTCTGTTCTTCTTTAAATTGAAAATCCTACTTATGTTTTCTTTTTGTCATTACTTGAGGACAAGCAATGGTTTAAGTTTGGGGGTATGATAACTCTATTTTATATAGAGTTATTTATGCATCTAAGCATAACTAATTGCTTGAAACCAAGTATAATATCTGTTAAATATAGTAGTATAAGTAATATAAACAACATTTTGTGTTTCAAAGAGGATTATGTAATGATTTAAGCATTATATATATATTGGTATATTTGATATGTTTGTTCAGTACACTTGCAGTTAGGTGCAAATACACCAGGGAAACAGCAGTGCATCTGCACTAAACTACACTTACAGCAGTTGCGTTGAAGGCAGATTTAACCCCACCTTGGAAGCACCTCAATTCATACCAATGTATAAACTTTTCTATGACATTATGCTTAGTCATAAGTCACATGGAGGCACATGCCAACATGCAAGAGGAGGCGCCCACAATGGAAAATCATCATGAAAGGCTACGCATCTAAAACACATGGCTTTCCACAATTGGACCTCCCCTTTGGACTTAATCTTCTCAATCAAAGCTCTGAAAAGTAACCATGGTTAAGCCACCTTTGGTCAGCTTGATCTCCAAGGAAAACCTCACTTGAAGGAAACCTCCAAGGCTATATAAATGCTTCCTCCTCTCACTTGAAAAGCATCATATCATAATAGATACATACACTTCACTTGTAATTTAGTAGTTTCATTCCTTATAGTTTTTAGTAATAGTTAGTTGGCAAGAAGGTAAGGAAGGAACTGACGACTTCTTCCTTCACTTCTTCATCAACTTAGTTAGGTGCAACTGCACCAGGAAGTCAGTGCTTCTGCACTGCTGGGCAAATTTATACAAGAGTACTTCAATCAGTGTAATCTCTACCCTATTGATATATCTCTTGTTTAAATTTGCCCAGCAGTGCAGAAACACTGACTTCCTGGTGCAGTTGCTCATGGATCATTCTAATTTTTTTTATAGGCAATGTTAGTGTGGACAGGAAAATGTTAGTTTCTTGGGTTTGCACTCGGGACCTCCGCTTGCACTCTTTTGGTGTGCTTCTTCGGTATCCGTTAGCTAGCCAACTCAGCTACCCACTTGAGATCATTCTAGTTATTATTACATTGATTTTTTTTTTTGACAAAAATTACATTGAATTTTAATAAATATGATTTTGAATAGAAAATTATTTATGACCCATCCAGAAGAGGGAACATTACAGCCATCTTGCCAGCCATGCACAGGATACCTGGTCCCCATCCAATTTTCCAAATTCCAATTTTCATCCGTCAGACTGATAGAGATATCTAACGGTCTGAGATTTCCCACGATCTCACACTTTAACCTTTGATTAATCAGATTCAACATGGTTCACGTTGCTCCACGATCATCACTTAATCATCGTTAGATTCTAAAAGATCCAACGGGCACAGTTGTGCTAGAACCACAACATGGTAGCGGGAACAACAACTGAAGAAAGAAACTAGAGAGAGAGAGGGAGTTGAGCTGGCGTAGATTTTGGGGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF14569.9	zf-UDP	29	106	3.70E-41
PF00170.24	bZIP_1	240	299	2.80E-14
PF07716.18	bZIP_2	240	293	3.10E-09

Gene family

Gene family	Subfamily
Transcription Factors Family	bZIP
Carbohydrate-Active enzymes Family	GT2
Transcription Factors Family	Others

Gene Ontology

GO term	Description	Category
GO:0010114	response to red light	Biological Process
GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process
GO:0016760	cellulose synthase (UDP-forming) activity	Molecular Function
GO:0010017	red or far-red light signaling pathway	Biological Process
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR044280	Transcriptional activator Hac1/HY5
IPR027934	Cellulose synthase, RING-type zinc finger
IPR046347	Basic-leucine zipper domain superfamily
IPR004827	Basic-leucine zipper domain

trEMBL

trEMBL term	Description
A0A8B8KIJ2	_

SwissProt

SwissProt term	Description
CESA1_ARATH	Cellulose synthase A catalytic subunit 1 [UDP-forming]

KEGG

KO	Description	Enzyme
K16241	transcription factor HY5

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G32410	cellulose synthase 1
Medicago sativa L.	MsG0380013471.01.T01	_
Oryza sativa L.	LOC_Os05g08370.1	CESA1 - cellulose synthase, expressed
Cucumis sativus L.	Csa002307	_
Glycyrrhiza uralensis Fisch.	Glyur000422s00020644.1	_
Codonopsis lanceolata	Cl_chr01_56880T	_
Arachis hypogaea L.	AH10G14060.1	Transcription factor HY5 like

Expression pattern