Gene detail

Detail information of Am03G027860.1 Annotation

Gene ID	Annotation
Am03G027860.1	SKP1-like 11

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G027860.1	mRNA	Chr03	102014865	102015329	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM03G027860.1
CTGAGAAGTAAATAGATAAAAAAAACAAACAAATTAATTATTAAAAGAAGGAGGTATATAAAGGAAACCTGAAAAGGGTGTGAGGGAACCCTAATATCATTTTGCAGCCGCATCTACATGCTTGAAGGGAGAGTGAGTGAGTTCTCACCAGGAGAGGGAAAAAGAAATAAAACGTGAAGAAAGAAAAAAAGGGAAAGAAGAGAAGAAGAGGGGAGAGGGGGAGAGAGAGGTGCGGCGGCCAAGGAGGAGGGGAAGCTGGACGCGGCGGAGCGCCGGTGAGGGGGTGTCGACGATGGGGAAAGCCGACGGCGACGGCCACCGCTGGCAATGGTCGAAATCTACAGGTTTTTTTTTCATCTCTTTTTAGTTTAGTTTTTTTTCTAACTGTTTAGCTCTCCTCCTTGTTCCTCTTCTCACATCTTCTTTTTGCTACTTGTCTACATTTTGATTGAAAACAACCCTTCTGTTATTTTCAAGAAAAAGAGTTTGTTTATTATTTTGCTCCTAAAAAAACGTGATCTTGTTCTACTCACCTACTTGTTTTTTTGTTGTTTTTTTTACATCTATTTTTTCTCAGTACTGAAGTTGAATCCTACCTAGTTTTTATTATGTTGTTTACATGATTAAAAAAACGGAAACAGAAACTAAATATTTCTAAACTGTTCTAAAAAACGCATACAAGACTAGAGTTTGGCCAACCTAGGTTCCTGAAAAGTTGTAATTGCGATTACTGAAAAATCGATCCCTCCTTTTTTTCTACCACTCCTGTTACTTATATTGCCCTTACTACTCATGATTAAACCTTATTCTCCTTCTTCCAGAAATTTCGTAATAGAGAAACCAGTTTGTTTTCAGTGAAAATTTTTTTTTATGTGTGAATGGTTCTCCTCCTCCTTACTGTGTTGTTGTTCATGGTATTTTATAGGCAAAGGATTGTGGTGTGGGTGTGGGTGCTCAGCAGAGGATTACAACTCTAGGAGACCATAAAGCACAACAACCTCTGGTAGAGGTAGTATGAGGCAGCAGAGGTGGAGCAGTGTTGCTGCCAAGGCTGCAATGTTTTTGCTAAAAATGGAAACCAAACAAAGAGGCAAGAAGAAAGAGGTTTGGGCTTGTAGCTCCATGGAAGAAGCAAGACAGCAAGTCGCATGTTGCTGTACCATTTTAATTTTTGCTTTTATTTTTTTTTTGTACCTTTCTTTTTGTTTGTATTTTGTCTCCACATGTAACAAAGAGCTGACTTTCTCTTTTTTGGTACTATTTGCCTTAATTTTTTTGTCTATATGTGTAACCAATCAAGATAAAAGGGACAGTTATTTAAAACTGATTTTACTTTATTATTATTATTTTTTTATGTCACTAATGATAATTAATCTCACCATAATTTATAAATATAATAGAAGCGGTAAAATAACGCGTACCGACACAATCACCCGCATGCGACTCGAAACAAACACTTGCTCGCATTAAGACTATGAACGCGTACGTGATTTGAATACGCACATAATGCACTTCGATAGTAGGACATGCGTACGGTTTAGGCATGACGCGCGTAAACTATTATTATTATTATTTATTTTTTTGGGACTTTTTTTTAAAAATAACGAGTAACTGTCGGTTAAAATTGGATGTTCACAGAGGCTGAACCCCTATAAAGGTCACGAATTGGGCCAAAGTTGAAAAGACACGTCGAATCAATTACATCACTGACACGCGCGTGAAACGATGTGCCATCATTACTCCAGCCGCCATCAAACGACGTGTCCAATCAGCAACATTAATGACAAGCGCGTAAATGGAAGCGCCATTATTAAACATGAACCTTAAGTCACTCAACGGTCGTCTCTGTCTCGTGAGCACAAGCTCGGCTTTGTGTAGATTGGAGCTGGGGGCAACAACCCACGTGAGCACTAGCCCGACTTTGTGAAGATCGTCGCTGGGGGCAAAAACTCACGTGAGCACAAGCCCGACTTCGTGAAAGATCACAACTCGGTAACAAGATCCCAGTCACTCTGGGAAAGGGTCAACAGAACCTTTCGGAAAGTAAATTCGGCTCTGGAGCTAGAATTTAGGTCAAACACCACTTTGACTCTATAAATAAGCATTCAATGCAAGCATTAAATAGATGCTATCTCACCATATTCTCACCTGTACTAAACTCTCTACCTGACTTAAGCATGTACCACACCTCCTGGATCGGATCGGAACATTGTTGATCAAGACCGACGACTACCTACTATCTCGGATTGCCTACAAGATCAGAGATACGGTACAAAACAAACACCCTTAAAAGGATTGACAAAAGAAAATATAAGGACTAATAGCGAAAGAAATTTTTTTTTAGGGACTAACAACAAAAAACTTAAATTTTATATGGATCAAAACCATATTTAACTCTAAACTTTTTGCAGCATAAATCATGTTTGCGGTTTTACTTTTTTTTTGGGGGGACAAAATTCAACCTTTTTATTTTGTTATGAAAGAGATATTTGCACTAGTAGTTACAATAAATATAGATTATAATCACAGATTTATTTGTTTCAGTTATGTATTATAAATACTTTTTGCTTATAGATATGTATTGGAATTAAATTATTCAAATATAAATAAGTAAATAATTACTTGTAATACTTAGCCGATACATAAATAAAAAGTTCGCTGTTTTGTCAAAAAAAAAGTTCGCTGTTGAAATATCCAACATCATATATATTGATCTAAATCATCTAATTAACTAATAGAGGAAAAAATTAAAACGGAATCAATCGAGTTCCTATAAGAAAAAAGGCAACCAAATCAAATAAAATAGCAGTAAATCAAGATTCTGTTATTTTTCAGTTAGATATAACAAACAAACGATATCTCCTCCGGTAATCTCGATAATAGTTGATTTGAAATATCTAATCCTCATCCTCACTCAACAACCCTATATATACACTTCATTCACTCTTCACTTGATCTCACGCAAGCACATCTGTAAACATTAAATCTAATTTTCTCACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01466.22	Skp1	105	151	1.60E-29
PF03931.18	Skp1_POZ	6	66	4.80E-22

Gene family

Gene family	Subfamily
Ubiquitin Family	Skp1
Ubiquitin Family	Skp1

Gene Ontology

GO term	Description	Category
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0016567	protein ubiquitination	Biological Process
GO:0000278	mitotic cell cycle	Biological Process

InterPro

InterPro term	Description
IPR001232	S-phase kinase-associated protein 1-like
IPR016897	S-phase kinase-associated protein 1
IPR036296	SKP1-like, dimerisation domain superfamily
IPR011333	SKP1/BTB/POZ domain superfamily
IPR016073	SKP1 component, POZ domain
IPR016072	SKP1 component, dimerisation

trEMBL

trEMBL term	Description
A0A498I0N3	_

SwissProt

SwissProt term	Description
ASK11_ARATH	SKP1-like protein 11

KEGG

KO	Description	Enzyme
K03094	S-phase kinase-associated protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G34210	SKP1-like 11
Medicago sativa L.	MsG0380017608.01.T01	_
Oryza sativa L.	LOC_Os09g36830.1	Skp1 family, dimerisation domain containing protein, expressed
Cucumis sativus L.	Csa015744	_
Glycyrrhiza uralensis Fisch.	Glyur000232s00013749.2	_
Codonopsis lanceolata	Cl_chr03_22940T	_
Arachis hypogaea L.	AH14G34390.1	SKP1-like protein 1B like

Expression pattern