Gene detail

Detail information of Am03G027030.1 Annotation

Gene ID	Annotation
Am03G027030.1	RNA helicase, ATP-dependent, SK12/DOB1 protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G027030.1	mRNA	Chr03	97691617	97717776	+

Sequences

CDS:

>Am03G027030.1
ATGGATCCGATTCAAGCAACCAACGAGCTATCTTTCCGGGTCGGGTTTACTGGCCACAGCGGCCACCTCAGACTGGAACCACTGTCCACGGTGGAGCGTGCCAACCCGCTACGATCCATTCCCGATTTCATTCTGCCACCTGCCTTTCCTAAGGAGACACCTGAATCTATAAAAAAGTTTATAGAAGAGACTTATCTCCAGCCAAGATTGGATCCTGATGAATTTTCACCAGAAAAAGTTGGGAGGCAGTGGGAGTTTGACTGGTTTGACAGGGCTAAAGTTCCTTTGGAGCCATCGGTGCCGCGGACTGCTGTTGTTCCAATTTGGGAACCACCGTTTCGACGTTCTTTGGAAGGAACCTGGAAGCCAAAATTTGAGGAGGTGGATGTATCCGAGCTGACATCAGGAGCTGTAGAATCTGGGTCATTACCACGCACTTCTGCAAAGGACTTTGTTAGGGGAAGCATCAACAATCGCCCTTTTCGCCCAGGAGGTTTGGATGATTCACAAGGTTTAGAAAGAACTCTTCCACCTGGTGCTTCTAATGGTGAATGGGTGCGTGAAATTTTGAATGGCGGCCCTGCACAGACAATTCCACCTAGCTCAAAGCAAGGATTGGACCTTGGTCCGCTCAAGCCGTATCCATGCTCATGGAATGTTTACAAGGATGCCAATACACCCAAGAGTTCGTTAGATGAAAATTTGAGTGGATTGTCTGTTCAGTTTGATGACTTATTTAAGAAAGCTTGGGAAGAGGGTGATGTTGCAGAAGAAGAAAAAGAAGATGGTCATTTATCAGAAGTAGAGACTGTTACGTTGGAAGTGGAAGTTGATACGCCTGAGTTATCCAACAAAGCTAGTGAGAGCGAAATGTCACTTGATGATATTTTATCAGCTGATTCAGAAGGAGCAAGACTGCATTTGGACGGATTTAGTGAAGAAGTTGGACAAAAGCAGAAGGAAGCTTGGGCTAAGCTTGAAGCCAGTGAGCGAATTGCAGATCACTTTCATGATCTTATTCCTGATATGGCACTTGAGTTTCCCTTCGAATTGGATGCATTTCAAAAGGAGGCTATCTATTATCTTGAGAAGGGGGAATCTGTTTTTGTGGCCGCTCACACATCAGCTGGAAAGACTGTAGTTGCTGAATATGCTTTCGCTCTAGCATCAAAACACTGCACTAGAGCTGTGTATACCGCTCCAATAAAAACCATCAGCAATCAGAAGTATAGAGATTTCTGTGGGAAGTTTGATGTTGGGCTTCTTACTGGTGATGTAAGCTTGAGGCCAGAAGCTTCTTGTCTCATCATGACCACAGAAATTTTAAGATCAATGCTCTATCGCGGTGCAGATATAATTCGAGACATTGAATGGGTTATATTTGATGAGGTGCACTACGTCAATGATGTTGAAAGAGGTGTAGTTTGGGAAGAAGTAATTATAATGCTTCCAAGACACATCAATGTCATCCTCCTTTCTGCCACGGTTCCTAATACTATTGAGTTTGCCGATTGGATTGGTAGGACAAAACAAAAGAAAATTCGGGTAACAGGGACAACAAAAAGACCTGTTCCGCTGGAGCACTGCCTGTTTTATTCTGGAGAACTATATAAAATTTGTGAAAGGGAAACATTTCTGCCCCAGGGTTTGAAAGCTGCTAAAGATGCTTCAAAGAAAAAAAAAATGACTGCTGGTGGTGGTTCTGGACCAAAGACAGGGACTTCAGCAGGTCATGACAATGCCCGGGGTCAAAAACGAGAAAATACATCTCGAATGACACAGCATGGAGCTAATTTCTCTGGAACTGGCAGAGGCTATCAGAATAGCGGCAATGGCCATAGCAATTGGGAACTGAGGAGAGCAGAGTCTTCAATGTGGTTGAAGCTTATCAACAAACTCTCCAAAACATCATTGTTACCTGTGGTTGTTTTTTGTTTTTCTAAGAACCGCTGTGATAAATATGCTGATAGCATGACCGGAACTGACCTCACTAGTAGCTCAGAGAAAAGCGAGATCCGTGTTTTCTGTGACAAAGCGTTTTCACGACTGAAGGGATCTGACAGAAGTTTACCACAGGTTGTTCGAGTCCAAAATCTTCTTCGTAGAGGAATTGGTGTACATCATGCTGGCCTTCTTCCAATTGTAAAGGAAGTTGTCGAAATGCTATTTTGCCGCGGTGTTATCAAGGTCTTGTTTTCAACAGAGACCTTTGCAATGGGAGTCAATGCACCTGCTAGAACGGTAGCCTTTGATACTATAAGGAAGTTTGATGGCAAGGAATTTAGACAATTGCTACCAGGAGAATATACTCAAATGGCAGGTCGTGCTGGCCGAAGAGGACTCGATAAGATCGGGACAGTTATTTTGATGTGCCGCGATGAACTCCCAGAAGAGAGGGATTTAAAACATGTTATTGTTGGAAGTGCCACTCGTCTTGAATCTCAATTTCGGCTAACCTATATTATGATCTTGCATCTCTTTCGAGTTGAAGAATTGAAGGTAGAGGACATGCTCAAAAGAAGTTTCGCAGAATTCCATGCTCAGAAAAAACTTCCAGAAATGCAACAGCTTTTAAAGCGAAAGCTTAATCAGCCTACAAAGGCTATTGAATGTATAAAGGGTGAACCAACCATTGAAGAGTACTACGACTTATATTTGGAAGCTGAGATATACAGCAACCAGATATCAGAGGCAATTTTGCAGTCTCCCAATGCCCAACCATTTCTCAATATTGGAAGAGTTGTAATAATGAAATCAGAATCAGCCCAGGACCACTTGCTTGCGGTGATTGTGAAAACTCCTACTCCAACTAACAAGCTGTACATTGTTTTTGTGATTAAACCTTACACGCCACCCTCCGTGGAAAATGCCTCTAGTGGTGGTAATTTGCAGGATAAAAGCAATGCATTTGACCAAGGGTTTTTTGTATTGCCAAAATCAAGACGTGGTCTATTAGATGACTATGCTACAACTGTTTCTGCTCGCAAAGGAAGAGGTATCGTCAACATCAAATTTCCTCATCGTGGTTCTGCCTGTGGGATGAGCTATGAAGTCCGTGAAGTTGATAGTAAAGAGTTTCTATGCATATGCAATAGCAAAATTAAAATTGACCAAGTTGGACTTCTTGAAGATGTTAGCAGTTCTATCTACTCAAAGACCGTTCAGCTGCTCCTGGATTTGAAATCAGATGGAAATAAGTATCCTCCAGCTCTGGATCCTGTGAAAGATCTAAAGCTGAGAGATGTGGAACTTGTGGAGACATACCGAAAGTGGATTAAATTGTTGGAGAGGATGTCCCAGAATCAGTGTCATGGATGTATAAAATTGGAAGAACATCTCAAGTTAGCGAAAGAGATAAAAATATACAAAGATGAAGTGTGTCATCTCCAGTTTCAAATGTCGGATGATGCACTTCAACATATGCCAGATTTTCAGGGCCGGATAGACGTCCTAAAAGAAATCGGATGCATTAATGAAGACCTTGTTGTTCAAATGAAAGGCCGTGTTGCTTGTGAGATGAATTCTGGGGAGGAATTGATATGTACTGAGTGCTTGTTTGAGAACCAACTGGATGACCTGGAACCAGAAGAAGCAGTGGCATTGATGTCTGCTTTTGTGTTCCAACAAAAGAATACTTCTGAGCCTTCACTCACATCCAAGCTCTCTGAAGCGAGACTGAGATTGTACAAAACAGCTATAAGACTAGGAGAGCTTCAAGCTCAGTTTAATCTCCCAATAAACCCCGAGGAGTATGCCCATGAAAATCTCAAATTTGGTCTTGTTGAAGTGGTTTATGAATGGGCAAAGGGTACTCCGTTTGCTGAAATATGTGAGCTTACTGATGTTCCTGAAGGCCTGATAGTGAGGACAATAGTCAGGTTGGACGAGACATGTAGGGAATTCAAGAATGCTGCAGCTATTATGGGAAATTCTGCGCTCTGCAAAAAAATGGAAATTGCTTCTAATGCTATCAAGCGTGACATTGTATTTGCAGCTAGCTTGTATATTACCGGCGTATGA

Protein:

>Am03G027030.1
MDPIQATNELSFRVGFTGHSGHLRLEPLSTVERANPLRSIPDFILPPAFPKETPESIKKFIEETYLQPRLDPDEFSPEKVGRQWEFDWFDRAKVPLEPSVPRTAVVPIWEPPFRRSLEGTWKPKFEEVDVSELTSGAVESGSLPRTSAKDFVRGSINNRPFRPGGLDDSQGLERTLPPGASNGEWVREILNGGPAQTIPPSSKQGLDLGPLKPYPCSWNVYKDANTPKSSLDENLSGLSVQFDDLFKKAWEEGDVAEEEKEDGHLSEVETVTLEVEVDTPELSNKASESEMSLDDILSADSEGARLHLDGFSEEVGQKQKEAWAKLEASERIADHFHDLIPDMALEFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINVILLSATVPNTIEFADWIGRTKQKKIRVTGTTKRPVPLEHCLFYSGELYKICERETFLPQGLKAAKDASKKKKMTAGGGSGPKTGTSAGHDNARGQKRENTSRMTQHGANFSGTGRGYQNSGNGHSNWELRRAESSMWLKLINKLSKTSLLPVVVFCFSKNRCDKYADSMTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRSLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVAFDTIRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVILMCRDELPEERDLKHVIVGSATRLESQFRLTYIMILHLFRVEELKVEDMLKRSFAEFHAQKKLPEMQQLLKRKLNQPTKAIECIKGEPTIEEYYDLYLEAEIYSNQISEAILQSPNAQPFLNIGRVVIMKSESAQDHLLAVIVKTPTPTNKLYIVFVIKPYTPPSVENASSGGNLQDKSNAFDQGFFVLPKSRRGLLDDYATTVSARKGRGIVNIKFPHRGSACGMSYEVREVDSKEFLCICNSKIKIDQVGLLEDVSSSIYSKTVQLLLDLKSDGNKYPPALDPVKDLKLRDVELVETYRKWIKLLERMSQNQCHGCIKLEEHLKLAKEIKIYKDEVCHLQFQMSDDALQHMPDFQGRIDVLKEIGCINEDLVVQMKGRVACEMNSGEELICTECLFENQLDDLEPEEAVALMSAFVFQQKNTSEPSLTSKLSEARLRLYKTAIRLGELQAQFNLPINPEEYAHENLKFGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALCKKMEIASNAIKRDIVFAASLYITGV*

Promoter(3k):

>AM03G027030.1
AGATACTAAGTCTTAAGATGTACAACCTGATGTTAATTATTTAGAAAATAGAAAGCTTTTTTTTTAATTAATATAGCTAATATTAGCATTAAATTTAAAGTGTTTCATACGCCGTGTGTTTGTTCATTACTTGTGTTTGTTAATGAACAAACATGCTAATATTAGCTATATTAATTAAAAAAAAAGCTTTCTATTTTCTAAATAATTAACATCAGGTTGTACATCTTAAGACTTAGTATCTCAATGAATTCTATTATTAGTTGCTAATGGACATATTTGATTTGGTTTTATGTGTTACTTACTTTAAGTAATGAATTGGATATATTGTTGTTTTGTTCAAACTTAGGCAAATATTAATATATATTAGTTTTAAATTTGTCCCCCCTAAAAGTTCCACCCAAGATCCACCACTCTCGGTGATATTTTACTTGCTTGAACGATTGGGCAAATACAAAGATGGTTTATTTAAATGACACTAATTATCATTTGTGGAATGGTAAGATGACAGATTTGTTGTTGTGTCGATGTGCTAATTCCTCATCAAAGGATCAAGTTAACTCAGTAATGGGAGTAGTGAGCAGAACAAAGCCACATTATTCCACGGTTAACGAGGCCATGTTTATCATGTTGAGGTTTAGTGACAAAGTTAAGAAGACATAGTCAAATATTTTCTGGTAAGACTAAATGGCTCAAAATAAGGGTTTTCTGGATAAGCTCTCTCAAATCTGAAATGAAGTTGACATGTGTTTCTTATCCGGAAAATTCTGGATAAGCTCTTTCAAAACTACCAACATGTGTTTCTTCAATCTTGGGTGCCCTGAGACTGTTGCGTTTAAGAAAATATTTGCATTCTAAGAGATAATGGAAACAAAACAAGCACATTAATAGTCATATTTCCAAGAGAGAATATTGAAATCGGGGGGGGGGGGAGTTCTCTTTCCTTCTAGATGTTTTTATCTCTAAGGAGAATTTTGCATCAGAAGGTTTTAACGAGGCTCCTATCCTTTGTTTAAAAAAAAAAAGAGAGAATGTTGACATGCCTTCTAGCATGAACACATGCTTGAAAGTTGCAAACAGACTCCTCCAATTCCTAATCAAAACTGTCTACATTCTTGTGCAGAAACACAAGCAATTAACGACTATGAGGATCATTAATGGATCAACATCTCAATCAGTTTCTATTCTCATATGTTCCATTTTCCATTGCAACTTTGGTTTAATATCACAATCAATGTTTATTGAATTTCCAAATTACTTTCACTTCTTGCCATAATAATTAAAATGTTTAACTTCTAGATTCTATATATCAAAACGATTTTTATAGGTGTTTCATATCCCATTGCAAACTTTGATTTAATATCCCAATCAATGTTAATGGATTTCTAAAACACTCTTTCACTTCTTCCAATATTTAAACTGTTTAACTCCTGAACTTTTAGGTTCAACATTCCAATCAATTTCCATTAGGAGGTGTTCTAGGGACCATTGCAAACTTTGCTTTTGGTTGTTATATAAGCAATGATCGGAATTATTTCTGTAGGAAACATAAGCTAAAGGAGGGGAAACATTAGTGTTTGTGTTTGAATGTAATTTATTTATGCTATATGTCGAGACTGAGAGGATGTATCTTCACTCTTAAAAGAAGTTCATTTTTGTTGAATGCATATTGGTGAATTGCTAGCCAGGAATTGATTAATTGTTGCATGGATATTGGTTTGTATCCTCCCATTCTTTTATGCTACATTATCAATGAATTTCAATCACTTGTCGACATAACTCAACTTATCTTACATTATCTTTCAATATATTTTATCGAAAGTTAAAATTTCAAGAAAAATTTACATGTGCATTGCATGGGTAATGATACTAGTAACATTCAATCCAAGTGTTTCAACTGCATTAACTAATGTTTTGGATTGGGCCAAGTTCCATTACCGAATTGGGGCGACCTAATTACCCACTTACAACCCTCCAGCAAAGGCCACACGCCCCAAAATTGTCCAACGACCGAGATCGGTCCATATCACATCGTACGGTCACGATCCGACCTCAACCAGTATCTCACTCTCATAACTGCCTCACCATGTCATATTCCCCACGCGCCCCACACATGCTTCATGGGCTATTCACATCAAACTGGATCCAATCATTGTAAATGTACACATTAATCACTTCTTACATCACTCTCTTTCCATTGTACCGACTTAGGCATTGGAGTGCGTGCAGACACCATCCCAAATTCATCACCGTCAACCATCGTAGCTGAGGAGTTTCAGTGGCTTCATCCACTTCGGACTAAAGGTAGAGTACAACTAATGTCGATTTTTTACTAATATTGAAAATAGTTTTTTCCTAGAAAAAAAGAGTCCCTATGAGTTTTTTAATTTTAATCCCTAAAAAAAATTCACACACTTTTGGTCCCCCGTTTTCTTTTCATCAGTTCTACTTCCTAATGATTTTTAATAGCGCATCATAACTTTGAATAACACTTTCTTGAAACTTTTATAGCGCTTCTAAGCGCTATTAAAAGTCATAAAACGCTATTAAAAGTCATGAGTGATTAAAACAAATGAAAAAAATTTGAGGACTAAAAGTAGGTAAAAAAGTTTAGAAGGACCGGAACTAAAAAATGCAATATTTATAGAGACAAAAAACATATATATATATATATATATATATATAACTTTTGTCAAAAAAAACATATATATAACTTATTAATTATTATAAATTTATTGTTTCATTGTTTCATTACCAAAAAAATATATAATAGATAAAAATCCTCCCCACAAAAAAAAAAAAAAATCCTTTACTGCTGCACTTTCATTTTGATGTCTATATGTGAGTGAGAGTGTCTTTTACCCTTCTTACCGCTTACCCAAAACCCGCGAAAATCAAAACCCTGCATTGCTCTGCAAATCAAAACGCAAAGCATAAAGAATAAACTAAAAAGTGAATTAGAGGAGAGCCAGCGAGAGCACAGTAACAGTGGTGGTGCTCTCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF08148.15	DSHCT	1162	1331	1.70E-49
PF13234.9	rRNA_proc-arch	835	1135	5.50E-44
PF00270.32	DEAD	354	500	3.00E-15
PF17911.4	Ski2_N	79	213	1.00E-12

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003723	RNA binding	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0010629	negative regulation of gene expression	Biological Process
GO:0016071	mRNA metabolic process	Biological Process
GO:0016787	hydrolase activity	Molecular Function

InterPro

InterPro term	Description
IPR040801	Ski2, N-terminal domain
IPR025696	rRNA-processing arch domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain
IPR016438	ATP-dependent RNA helicase SKI2-like
IPR012961	ATP-dependent RNA helicase Ski2/MTR4, C-terminal

trEMBL

trEMBL term	Description
A0A1S2Y898	_

SwissProt

SwissProt term	Description
SKI2_ARATH	DExH-box ATP-dependent RNA helicase DExH11

KEGG

KO	Description	Enzyme
K12599	antiviral helicase SKI2	[EC: 5.6.2.6]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G46960	RNA helicase, ATP-dependent, SK12/DOB1 protein
Medicago sativa L.	MsG0380014676.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa014449	_
Glycyrrhiza uralensis Fisch.	Glyur000027s00001592.1	_
Codonopsis lanceolata	Cl_chr06_28040T	_
Arachis hypogaea L.	AH11G04640.1	ATP-dependent RNA helicase SKI2 like

Expression pattern