Gene detail

Detail information of Am03G026970.1 Annotation

Gene ID	Annotation
Am03G026970.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G026970.1	mRNA	Chr03	95299467	95300398	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM03G026970.1
CGCTTTTTGCGATCATATCGTTGAGGTAGACTCCCACGTTACGGCCGATCTGCTTTCGGAACACCTTGTTCATCATCCTTTGATAGGTGGCCCCCGCATTTTCAAACCAAATGGCATGACCCGGTAACAAAAATTACCGCGGTCAGTCATAAAGGTCGTCTTCTCTTGGTCGGGGGGAAACATCGGGATTTGGTTATACCCGGAATAGGCATCCATTAACGATAGTAAATGAAAACCTGAAGCATTATCGACAGTCAGGCAGATCGGATCCGATCTGGACAGTTTGGGTCGGGTCCTCTCCCAGCTGGATCTGCACGAACTGTCCATCAGGTTGGGGTCGCCTGATTTTCTTTTTCAGCTCTCGTGCCAGCTCGTCGTCGCTCTCTTCCTCGGAGCTGTCAGGATCATACCTCGCATCGAGGTCTATGACGTTGACCTCGGCAGATTAACCGCTTCTCTTCTTCTTTGTGTCTTTCTGAGCTCCTGCTTCTACGGGGGGAACCCCCTCCTCTGAGGCCTGCCTATCTGCCTTGACATGCTGATAGAAACATCTTTGGGCGGACTCTAGGTCGGCATCAAGGGTGATTATTTGGTCACTCAAAGAGTAGAACTTCATTTTCAGGTGAACCGTCGAGGTTACAGCCCCGAGCCTTCCAAGAGTCGGTCTTCCGATGATGCAGTTGTAGACCGAAGGGCATGGCAGCACTAAGAATTTGGTCTTGACCGTCCTCTCCAGCGGATCCTCGCCATAGGTGACCATCATTTCCAGATAGCCGAGGGGTTTGGTTCGTGACCCGTTAAAGCCCGAAAGGTCCGATCCTCTGTAAGGGGTGAAGTCTTCCTCCGAGATCTACAGTTTCCTTACAAGGTCGATGAAGATGATATCAGCGGAGCTTCCTTGGTCGACCAAAATTCTTCTTATCTCGTGGTTGGCCATGACTGCCCTGATTATAAGGGGTATGTGTTTATTAGGCTTGCCGTCCAGTAAGTCTCGGTCGCCGAACGCCAAGGGGGGACGCTCTGGGGTAGAGCTTACTGCCGAGGTGGAAGCAGCACACATGACCTCCTTCCATTTTCTTTTCATTGTTTTCCCCGATGCCTCGACGGGGTAGCCCCCAGAGATAACCATCATTACAGGTCGGCCCTTTGATTTTCGAAAATCACGCTCATCCTCCGAGCTTTCTTCCCTTTCTTGGGGGGCTTTACCCTTCTTCTTAGGGTCGACCTTCTCTTCCTTGACCTTGGCCTCATGCCGGGGTGTTTTAGCCACGTACTGGCTCAATTTTCCTTTTTTGATCAGGTCCTCAATGTCATCTTTCAGAGCATTGCATCGATTGGTGTCGTGCCCTTTGCTCCGGTGATACCGGCAGTACTTGTTGGATCTCTGTCCCGGCCTGTGTGGGAGCGGATCGGGGAACTTGACTTCCTTGAATTCAGCGTTCATACATTCTGCCAAAATCCTGGCCCTTGTTTCATTAAGGTCGGAATATTGTTGGTGTCAGTTTCGAGGTATGGGTCTACCGTCGTTCCGGGCCTCCTTTTCATATCGAGGCTTGCTCATCCCAGGGTCGGCATCCGACTTTCTTGCAACCGCCCCCTCTTCATGATCAATGTACTTCTGAGATCGCTGGAGGAACTCGGCAAGCGACTCAGTTTGATTTACACCGACATCAATCTGAAATAGACTTCCTTCCCGAAGACCGGCTTCCATGAAGAACAGTCGGAATGAATCGTCTAGGTTCCGGACCTGAGCCGCTTCCTTATTGAATCTTTCGATGTAGTCCCGGAGAGACTCGTTCTCCCCTTGCTGGATGGCTTGTAAGACTTTCTGAGACTTTGGTTTCATCTTGGAGTGGGCGAACTGGGCCGAAAATAGCTTCGCCAGCTGGTCCCACGAGGATATCGAGTTTGGCTTGAGGGCTCTGAACCAGTCCAGTGCCAATTTTTCCAGGGTAAGAGGGAAGATCCGGCACTTGATCTCTTCTGGGACACTCCGATCCGAGGTGGGGTGGTACCTGCAATGACACTCCGACGCTCAAGTCAGTGAGTGAGTCAATTACAAGTAAGAGTATTGGGAAAGTGAGTACCATTAATGCTAGCATTGAATGCTTATTTATAGGTATTTGGAGTGAAGGAGGACCTTTAGATCTAGGTCTTAGATCTCAACCTTTGGCTGGATTTGGCCCTTTATTGTTGGGCCTTTAGGTGGATTGGTCATAGAGGCCCAATCCGTAACAGTATGAAAATGAAAAAATAAGAAGAAGTGAGAAGGAAGAAGAATGAATGAGAAAGAAGAAGAAGAAGAGAGAAATGTAGAAGGGTGTAGAAGAAAGTGAGAAGGAAATAAGAGTGAAACGAGAGAATGAGAAGAGTGTATGAGAAAGTTTTATTTATAGGAAGTTGAAAACGTTCCGGTGGAATTTATAACAGTTCCGACGGATTTTTCAAATTTTTTATTATTTTTTTAACAATAAATCCGCCGGAAATTCAAAAAAAATCCGCCGGAAATGTTCCGGCGACATTTTAGGCAAAATTTTTTGGCATTTCCGGCGGTTTTTTTTAGAAAAAAAAATAATAATTTTTTTTATTTAAAATAATAATTTTTTTTATTTAAAATAACTTATTTACATGGTTTTAACCAATCTATGGATCCGAAAATCCGAAAAATTTTAGTTTCGGATTTATCTCATTTTAAGGTGTTTCTGAAAATCCCAATAAATTAAGCTCCGAATTTATACCGATAGACATAATTCCGGAAAAAAGTTTTGAAGTCGGTGGTAACATCGTTTTTTCTGTCGATTTTGGTAATCCACAACGCCATCCACAATCGTGGTTAGCTATATATTGCAAAAAAAAATCGTTCACTTCACGACGTCCCCCAAACCTAACCTAAACGAAACACTCACCAACGCCAACGTTACCCCATCACCAAACGAACGAGATAACCAACCATTGCCGCAAACACCGGTGCATGCAAAAGCAAGCTGATCAATAAATAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01485.24	IBR	119	180	2.40E-10

Gene family

Gene family	Subfamily
Ubiquitin Family	RBR

Gene Ontology

GO term	Description	Category
GO:0061630	ubiquitin protein ligase activity	Molecular Function
GO:0005737	cytoplasm	Cellular Component
GO:0008270	zinc ion binding	Molecular Function
GO:0000209	protein polyubiquitination	Biological Process
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process

InterPro

InterPro term	Description
IPR017907	Zinc finger, RING-type, conserved site
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR018957	Zinc finger, C3HC4 RING-type
IPR044066	TRIAD supradomain
IPR002867	IBR domain
IPR031127	E3 ubiquitin ligase RBR family

trEMBL

trEMBL term	Description
A0A371DZV0	_

SwissProt

SwissProt term	Description
RGSL1_ARATH	E3 ubiquitin-protein ligase RSL1

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G14250	RING/U-box superfamily protein
Medicago sativa L.	MsG0580029104.01.T01	_
Oryza sativa L.	LOC_Os08g35060.1	protein binding protein, putative, expressed
Cucumis sativus L.	Csa009578	_
Glycyrrhiza uralensis Fisch.	Glyur000027s00001599.3	_
Codonopsis lanceolata	Cl_chr06_16390T	_
Arachis hypogaea L.	AH13G28330.1	Uncharacterized protein like

Expression pattern