Gene detail

Detail information of Am03G026240.1 Annotation

Gene ID	Annotation
Am03G026240.1	Clathrin, heavy chain

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G026240.1	mRNA	Chr03	90510769	90521062	-

Sequences

CDS:

>Am03G026240.1
ATGGCTGCAAACGCCCCCATCACCATGAGAGAAGCCTTAACGTTAGGGAGCGTTGGAATCAATCCGCAATTCATCACGTTCACTCACGTGACGATGGAATCGGAAAGGTTCATTTGCGTTAGGGAAACTTCTCCTCAGAATAGTGTTGTTATGATTGACATGAATATGCCTATGCAACCTTTGAGACGTCCAATCACTGCTGATTCTGCTCTCATGAACCCCAATACCAGAATTCTTGCTCTTAAAGCTCAAGTTCCTGGCTCTACTCAGGATCATTTGCAAGTATTTAACATTGAAACGAAAACAAAGATGAAATCATATCAAATGAACCAACAGGTTGTATTTTGGAAGTGGATAACCCCAAACACTCTAGGCATAGTTACTCAGACATCTGTGTATCATTGGTCAGTTGAAGGTGATGGTGAGCCAGTGAAGGTGTTTGAACGAACAGCTAATCTGGCAAGTAATCAGATCATCAATTATCGTTGTGATCCTAGTGAAAAGTGGTTGGTTTTGATTGGAATTGCTCCTGGTTCTCCTGAAAGACCACAACTAGTAAAAGGAAACATGCAACTCTTTGCAGTGGATCAACAACGGAGCCAGGCACTTGAAGCACATGCTGCCTCATTTGCCTCATTTAGAGTTGCTGGAAATGAGAAGGATTCGACTCTTATTTGTTTTGCATCCAAGACCATCAATGCTGGACAGGTCACGTCCAAGTTGCATGTCATTGAACTTGGTGCACAGCCAGGCAAGCCATCATTTACTAAAAAACAAGCTGATCTGTTCTTTCCACCAGACTTTGCTGATGACTTTCCTGTATCAATGCAGATTTCAAATAAATATGGCTTGATATATGTTATCACAAAACAAGGGCTTTTATTTGTCTATGATCTGGAGACTGCCACTGCAGTTTACAGAAATCGAATCAGTCCCGATCCTATATTTTTGACCTCAGAAGCATCATCAGTAGGGGGATTTTATGCTATAAATAGACGTGGCCAAGTATTACTTGCTACTGTGAATGAGGCAACGATTGTATCTTTTGTTAGTGGCCAGTTGAATAATTTGGAACTTGCTGTTAATCTTGCTAAAAGAGGAAACCTCCCTGGTGCTGAAGAATTGGTTGTTCAGCGTTTTCAAGAATTATTTGCCCAGACCAAGTATAAGGAAGCTGCCGAGCTTGCTGCAGAATCACCAAGAGGAATACTTCGTACTCCTGACACGGTTGCTAAATTTCAGAGTGTGCCTGTGCAAGCGGGGCAAACACCACCACTGTTGCAATACTTTGGAACTTTGTTAACCAGGGGTAAACTCAATGCTTTTGAGTCGTTGGAGCTGTCACGACTTGTTGTAAATCAGAACAAAAAGAATCTTCTGGAAAATTGGCTAGCAGAGGACAAATTGGAATGCAGTGAGGAGCTTGGTGACCTTGTGAAGACAGTGGATAATGACCTTGCGTTGAAAATCTATATTAAAGCTAGGGCAACGCCAAAAGTTGTTGCAGCTTTTGCGGAGAGGAGGGAATTTGACAAGATCCTGATTTATTCCAAGCAGGTTGGATACACGCCAGATTACTTGTTCCTTCTGCAAACAATTTTACGGACAGACCCGCAGGGAGCTGTAAATTTTGCTCTCATGATGTCTCAAATGGAAGGAGGTTGCCCTCTTGATTACAACACAATAACCGATCTCTTTCTTCAGAGGAATTTGATCCGTGAGGCAACTGCATTTTTATTGGATGTGCTGAAGCCAGACCTTCCAGAACATGGATATCTTCAAACAAAGGTTCTGGAAATTAATCTTGTGACGTTTCCAAATGTTGCCGATGCTATATTGGCCAATGGCATGTTCAGTCATTATGATCGCCCACGTATTGGACAACTTTGTGAAAAAGCTGGACTTTTCATACGTGCTCTTCAGCATTATACTGAGTTGCCTGATATCAAACGTGTCATTGTGAATACCCATGCCATTGAGCCACAGGGTTTAGTTGAGTTTTTTGGAACCCTTTCTCGAGAATGGGCACTTGAGTGTATGAAAGATCTTTTACTGGTCAATCTTAGGGGAAATCTTCAGATAATTGTGCAGACTGCCAAGGAATATTCTGAGCAGCTGGGAGTTGATGCATGCATTAAACTCTTCGAGCAATTCAAATCCTATGAAGGCTTATATTTTTTCTTGGGTTCATACCTGAGCTCCAGTGAGGATCCTGATATTCACTTCAAGTACATTGAAGCTGCTGCTAAAACTGGACAAATTAAGGAGGTAGAGCGCGTGACTAGGGAATCAAACTTCTATGATGCTGAGAAGGCAAAAAATTTTCTAATGGAGGCCAAGCTTCCAGATGCACGTCCATTGATTAATGTGTGTGATCGTTTTGGTTTTGTCCCGGATCTCACACATTATCTTTATACTAACAACATGCTTCGCTATATTGAAGGCTATGTCCAAAAGGTCAATCCTGGCAATGCTCCTCTAGTTGTAGGGCAGTTGTTAGATGATGAATGCCCCGAAGACTTCATTAAAGGCCTCATACTTTCAGTTCGTTCGCTTCTGCCAGTTGAGCCTTTAGTTGAAGAGTGTGAGAAGAGGAATCGTCTCCGCTTGCTGACTCAGTTCTTGGAGCATCTTGTGAGTGAAGGAAGCCAGGATGTACATGTACATAATGCCCTGGGTAAGATCATCATTGACAGCAACAACAATCCTGAACATTTTCTCACAACCAACCCATATTATGATTCTCGTGTTGTTGGTAAATATTGTGAGAAGCGTGATCCTACCCTTGCTGTTGTTGCTTACCGAAGAGGGCAATGTGATGATGAGCTTGTTAATGTTACTAATAAAAATTCCTTGTTCAAACTCCAAGCGAGATATGTTGTGGAAAGGATGGACGGTGACCTATGGGATAAAGTTCTTAATCCCGAGAATGAATATAGAAGACAGTTGATTGATCAAGTAGTGTCCACTGCTTTGCCTGAAAGCAAGAGTCCTGAACAAGTTTCAGCTGCAGTGAAAGCTTTTATGACTGCCGATCTTCCCCACGAGTTAATTGAGCTTCTTGAAAAGATTGTGCTACAAAATTCTGCTTTTAGTGGAAACTTTAATCTGCAAAATTTGCTGATCCTCACTGCAATAAAGGCAGATCCTTCAAGAGTTATGGATTACATAAACAGGTTGGACAACTTTGATGGGCCTGCAGTGGGGGAGGTGGCAGTGGAAGCACAACTATATGAAGAAGCATTTGCTATTTTCAAGAAATTTAACTTGAACGTTCAGGCTGTCAATGTTTTGCTGGATAACCTTCAGACTATTGATCGTGCTGTGGAGTTTGCTTTCCGAGTTGAAGAAGATGCTGTTTGGAGCCAGGTAGCTAAGGCACAACTAAGAGAAGGATTAGTAAGCGATGCAATTGAGTCGTTCATTCGTGCAGAAGATGTATCACATTTCTTAGAGGTTATAAAGGCTTCTGAAGATGCCGATGTATACCATGACCTGGTAAAATACCTTCTCATGGTTAGGCAGAAGACCAAAGAGCCCAAGGTGGACAGTGAGCTCATTTATGCTTATGCTAAGATTGATCGGCTTGGAGAAATTGAAGAGTTTATACTGATGCCAAACGTTGCCAATTTACCACTTGTTGGAGACCGCTTGTATGATGAGGCTCTATATGAGGCTGCAAAAATTATTTTTGCCTTTATCTCTAACTGGGCGAAATTAGCGGTCACATTGGTGAAGCTTCAACAGTTCCAGGGTGCTGTTGATGCGGCTAGGAAAGCAAACAGTTCAAAAACTTGGAAGGAAGTTTGTTTTGCCTGTGTTGATGCTGAGGAATTCCGCTTAGCCCAGATATGTGGTCTCAATGTCATCATTCAGGTGGACGATTTGGAGGAGGTTAGTGAGTATTATCAGAACAGGGGATGCTTCAATGAGCTCATATCTCTAATGGAGAGTGGGCTAGGATTAGAGCGTGCACATATGGGTATCTTTACTGAATTGGGAGTTCTTTATGCAAGATATCGTCCTGAGAAACTAATGGAACATATTAAGTTGTTCTCAAGCCGGCTTAATATTCCAAAAGTTATTCGGGCATGCGATGAACAGCAGCACTGGAAAGAACTTACATACTTGTACATCCAATATGACGAGTTTGATAATGCTGCAACCACTGTAATGAACCACTCTCCTGAAGCATGGGACCACATGCAATTCAAAGATATTATAGTTAAAGTTGCAAGCGTGGAACTCTACTATAAGGCTGTTCACTTCTACTTGCAAGAACATCCCGACGTAATAAATGATCTTCTAAATGTGATTGCTCTTCGTGTGGACCATACTCGTGTAGTAGATATAATGCGGAAGGCTGGCCACCTCAAATTAATCAAGCCTTACATGGTTGCAGTCCAAAGCAATAATGTGTCTGCTGTCAATGAAGCTCTAAATGAAATTTATGTTGAGGAAGAGGACTATGACCGACTTCGAGAATCAATAGATCTGCATGACAACTTCGATCAGATAGGTCTTGCGCAGAAGATTGAGAAGCATGAACTTCTTGAAATGAGGCGTGTCGCCGCATACATCTACAAAAAAGCAGGAAGATGGAAGCAATCCATTGCTCTGTCAAAGAAAGACAATCTTTACAAGGACTGTATGGAAACATGCTCACAATCTGGTGACCGTGAGCTCTCAGAGGATTTACTTGTCTACTTTATCGAGAAGGGGAAGAAAGAGTGTTTTGCATCCTGCCTCTTTGTCTGCTATGATATTATACGGCCAGATGTTGCTCTTGAGCTGGCTTGGATGAATAATATGATTGATTTCGCTTTCCCATATATCTTACAATTTATTCGAGAGTATACAAGCAAGGTAGATGAGCTTATTAAGGACAGAATTGATGCGCAAAATGAGGAGAAAGCTAAGGAGAAGGAGGAGAAGAACGTAATTGCTCAGCAGAATATGTATGCCCAGTTGCTACCACTTGCTTTGCCAGCACCACCAATGCCAGGAATGGGGGGAGGAGGGTATGGCCCTCCACCCCAACCACCTATGGGTGGAATGGGGATGCCACCAATGCCTCCTTTCGGTATGCCTCCAATGGGTTACTGA

Protein:

>Am03G026240.1
MAANAPITMREALTLGSVGINPQFITFTHVTMESERFICVRETSPQNSVVMIDMNMPMQPLRRPITADSALMNPNTRILALKAQVPGSTQDHLQVFNIETKTKMKSYQMNQQVVFWKWITPNTLGIVTQTSVYHWSVEGDGEPVKVFERTANLASNQIINYRCDPSEKWLVLIGIAPGSPERPQLVKGNMQLFAVDQQRSQALEAHAASFASFRVAGNEKDSTLICFASKTINAGQVTSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVSMQISNKYGLIYVITKQGLLFVYDLETATAVYRNRISPDPIFLTSEASSVGGFYAINRRGQVLLATVNEATIVSFVSGQLNNLELAVNLAKRGNLPGAEELVVQRFQELFAQTKYKEAAELAAESPRGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPLDYNTITDLFLQRNLIREATAFLLDVLKPDLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIGQLCEKAGLFIRALQHYTELPDIKRVIVNTHAIEPQGLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYSEQLGVDACIKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKAKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELVNVTNKNSLFKLQARYVVERMDGDLWDKVLNPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDNLQTIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSDAIESFIRAEDVSHFLEVIKASEDADVYHDLVKYLLMVRQKTKEPKVDSELIYAYAKIDRLGEIEEFILMPNVANLPLVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNVIIQVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSSRLNIPKVIRACDEQQHWKELTYLYIQYDEFDNAATTVMNHSPEAWDHMQFKDIIVKVASVELYYKAVHFYLQEHPDVINDLLNVIALRVDHTRVVDIMRKAGHLKLIKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDCMETCSQSGDRELSEDLLVYFIEKGKKECFASCLFVCYDIIRPDVALELAWMNNMIDFAFPYILQFIREYTSKVDELIKDRIDAQNEEKAKEKEEKNVIAQQNMYAQLLPLALPAPPMPGMGGGGYGPPPQPPMGGMGMPPMPPFGMPPMGY*

Promoter(3k):

>AM03G026240.1
GAATACAACAACTATCACATGGGTTCCATTTAGGAGGCGCCAAGTGTAATTTAGCATCCACTTGAAAGTCAAAATATCCAGCTGAGAGGAAGAGATAAGGGTGGTGACTCATCATGTCCTCAAGTGGCCACACAAATATCTCAATGGTCAGCCGTCATATAACGCTGTAGCGTCTCCTAGGTAGCATACCGCTGCGGCGCTAAAGCAAAACATCAAACATATTCACAAAGGCATTGACTATGCCCAAGGTTCAGGGAATTAACTTATAACCTATATTTATTCTAATATTCATATATTCACATATTTAAGTACTAGAATTACTTGAGAAGTAAGCTTTGACTTAAGTATTAGGAGCATAAATAACCTATATAAAATAAGGTTATCAATAACAAATTACAATCTGTCTACTAATGGTTACAGTTGAACAAAAGTACTGGACATGAATCAAAGACCAGGATATCTTAAAGTGTAGCGGCTTGGAGGAGAAGCTACTCTAGAGTTCAAGAATTATTTGTTAATCTGCTTTTGATAGGACACCGTGTAAGAACCTATTATTTCAGTTCTATAACTTTTAGTAGTTGAGAGATGATCTGTTTTGTTAAAATAAAATGGAGCTAGCCTTGGAAAAATCTTTTATATAAAACATGCTAATAGGTTAGGCACATGAAGAGTTGTAGTTTTAAAGAAAATAGATTCACGGGTTAGTGTTTTAAAAGAACTTGTTTTTGAAGTAAAGAATTGATTCTTGATTTGGTACTTTAAGCTAGAAATCGATTTCCTCTTGTTTTTAAAGTAACAAATCGATTTCACTCTTGTTTTAACAAGCTAGAAATCGATTTCCATATTAGATTATTTTTAAAAGAACTAGTTTTGGAAAGAAAACAATCGATTGATGGCCTTGTGTTTTTAAATGGAAAATTTGATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTAAAGCCAGGAATCGATTCCTCACCTGTTTCCCACAGGCAAGAAATCGATTTTTCACTTGCTATGGTGAAGAGCAAAATCGATTTCTTCCTTATCTTTTAAAGCCATAAATCGATTTCAACCTTCCTATTTCTCAAGAAATAAATCGATTTCTATACACTCCTATTTAAGCACATAATCGATTAATCTCTTTTTAGAAGCTTTCAACGGTCATATTTTGAGTAAATAAATCGATTCACATACACATTGTTTTAAGCAATCAATCGATTTACTACTCATCTATTTTACGTGAAAAATTGCCTCAACGGTCATATTTCTACAAACCTTATAAATAGGCACTTAGGTTTTTCATGAGAAAAAAGAGAACAGAGAGAATACAACGCACAACTCACAAATCAGAAAAAGAAGAAAAGAACTTTCACCGTCATATTCTTTCTTCAAGTTCTTCATCGTAAAATCCAAATCACTCATCTCTCTCAACTACTATACTGTTATATTGCTTGAGTGATTGGATCATAGTTTCTCTATTGTATTCATCTACTACTTGGTTGTTGTGAAATTCTGGGAAGTGTTCTTGGGTCGTTCACTCGGGGAGATTGGATTGGTAGCGAAATCCTTAGCGGGGAGCTTGGGTTCTCAATTTGGGAAAATTGAGAGTGGTGTGGTAGCTATAGGGAAGTTGCTTGCTTGTAAAACGTTGAAGAAGTTCTTCTCATATAGTGGTTATTCGCAAGTCCAAAGGTTGCAAAGCCGAAGGTCGAGGACGTAGGGCTTTTATCCCGAACCTCGTAAAAATCACGGTGTATCTCTTTCCCTTCTCTTTACTTTGTTTTTGTTTATATTTGTTTATCGTTATATTTGACTTCATTGCGCTGCGTTCAATATCACAATCTGTTTATCGTTAAATTTGATAATAGTGTGGTTAGCGTAAAATATCACTGTAACTGGTTCTGTCATAGGTATAGCTTGCTTAGGTACTGCATATAGTTTAAATCCTATTTTCCGCATTTGATTTAAACGTGCATCGTTAAATTTTGAAAACAAAAAAGAATTCAATTTTAGCGTATAACCTTATTCACCCTCTCTAAGGTTATCATATAGTCCAACACAAAGCTCTTCTCATCAGCCATGGAAGAATTTTGCGCACTTCTGATTTCGCTTCTTGATTCTTGTTACAACTAACATTTGGTGAATACTGCTGTTTCGTAATTAGGCCCCTGGATGGAGCTCTGATATGCCAGTTGTTAGAACAGAATTATTAGAGTAGAATTACTTGCTTCATTGAATGGCCAAACCATGTTGGTCCGGTACCTTGGTAGCCAAACCGTCTGGTACCTTAGTACCGACTTTGTTATTTCAAAGAACACAAAATATATACACTCGGTACCAAAGTATCGAAATAATTCGGTATTAAGGTATCAGACAATTACCTGTTGCAGAAAAATTAAAATCTAAAACGCGAAAGAGAGAAGAGGGAGGAAGAAGACGTACATACTAGAATCATAGAGAGAGTGCGAGAGAGAGAGCGATGAGAGACAAAAAGAGAGCGAGAGAGTGATGAGGAAGTGCGAGAGAGAAAGGAAAGGGGGAGGTGAGTGAGAGGTCGAAGGAAGAGAGGGTAGTGAGAGAGAGAGAGAATGTGAAGACAGGGGGTGGGAGTATAGGACGGATAAAGATATGTTGGGGTTTTTGAAAATTTTTGGAGAGTTGTAAAGTAATGGAGGGAGTGGGAAAAGAAAAGCCCAAAGAAATTCACAATTCTAAAGGGGCCTCGGACCAAGATCGAAACTAGTTTGCATGCTGTGATGAGTGAGTAAGAGTAATAAAAAATAAAAAAAAATTAAAAACATTTTTAGAAAGTACCTCTTTCCATTACCACCTTCTTCTATTTTCTCTCATTCCACACACACTCCTTCTTCTTCTCCCTCTCTTTCTCTCTGTCCTCTCGGACATCGCTGCTTCAGATCTCGCAGCGTAACAGAGAATCTCCATCACCTTTCCACATTTCAATTTCCCCTCTCATTCTCTGATCTACCCCTCACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00637.23	Clathrin	556	689	1.40E-196
PF00637.23	Clathrin	700	839	1.40E-196
PF00637.23	Clathrin	849	982	1.40E-196
PF00637.23	Clathrin	992	1130	1.40E-196
PF00637.23	Clathrin	1144	1280	1.40E-196
PF00637.23	Clathrin	1289	1430	1.40E-196
PF00637.23	Clathrin	1439	1578	1.40E-196
PF01394.23	Clathrin_propel	153	193	3.80E-33
PF13838.9	Clathrin_H_link	368	433	7.60E-29
PF09268.13	Clathrin-link	343	366	4.10E-08

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005198	structural molecule activity	Molecular Function
GO:0004672	protein kinase activity	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0009506	plasmodesma	Cellular Component
GO:0009507	chloroplast	Cellular Component

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat
IPR022365	Clathrin, heavy chain, propeller repeat
IPR015348	Clathrin, heavy chain, linker, core motif
IPR016341	Clathrin, heavy chain
IPR016025	Clathrin heavy chain, N-terminal
IPR016024	Armadillo-type fold

trEMBL

trEMBL term	Description
A0AAN9JXI9	_

SwissProt

SwissProt term	Description
CLH2_ORYSJ	Clathrin heavy chain 2

KEGG

KO	Description	Enzyme
K04646	clathrin heavy chain

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G08530	Clathrin, heavy chain
Medicago sativa L.	MsG0580029214.01.T04	_
Oryza sativa L.	LOC_Os12g01390.1	clathrin heavy chain, putative, expressed
Cucumis sativus L.	Csa005558	_
Glycyrrhiza uralensis Fisch.	Glyur001058s00023533.1	_
Codonopsis lanceolata	Cl_chr03_49660T	_
Arachis hypogaea L.	AH07G13880.1	Clathrin heavy chain 1 like

Expression pattern