Gene detail

Detail information of Am03G023550.1 Annotation

Gene ID	Annotation
Am03G023550.1	myb domain protein 43

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G023550.1	mRNA	Chr03	72643883	72646030	-

Sequences

CDS:

>Am03G023550.1
ATGGGAAGACAACCATGCTGTGACAAAGTTGGGTTAAAGAAGGGACCATGGACTGCAGATGAAGATAAGAAGCTCATAAACTTCATTCTCACTAATGGCCAATGTTGTTGGAGAGCTGTCCCTAAGTTAGCAGGGTTGTTAAGGTGTGGGAAAAGTTGCAGGCTTAGATGGACAAATTATTTAAGGCCTGACCTAAAGAGAGGTCTTCTATCAGAATATGAAGAGAAAATGGTGATTGATCTTCATGCTCAACTTGGCAACAGATGGTCTAAAATTGCTTCTCATCTCCCTGGTAGAACTGACAATGAGATTAAGAATCATTGGAATACACACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACACACAAGTTACTCAATAATGCAAACGAGCAAGAACAAAAACAACCTCAACAAGAACAAATACAACCTCAGGAATCATTACAAGAACAACAAAATCAACAACAATCAGATTCCAAAGTTGAACATGTGAATGAGCAAAACAAGGAACTTGAGAAGCCAGAGATTTCAGTTGAATCATCATCAACCATCACTGAATTAACCAAAGAAGAAGAACAAATTATGACACCATTATTTGACTCAATGGAACTAATGAATGAATTTTGCACAGAAGAAGTTCCAATTATAAAACCAGATGAGATTCTAGTTCCATGTGTTCCTTCAACAAGTACATCATCATATTCTTCATCTTCTTCAGCTTCAGCTTCAGATTCATCTAACTTCCTTGATGACCTTTTGCTCCCAGATTTTGAATGGTCTCAAAATCACAATGATAACTTAAATAATAACAATAATATTAATAATAATATTGAAAATAGTAATATGGTCTTGTGGGATGATGATGATGAGTTTATTAGAAGTTGGGATTTTCTTATGAATGATGATGATGGTGACAGAAAGCAAGTATGTGATGGCTCTCTTAATCAGTTCCCAAAAGTGATGATGGATTCAGAATCATGGGCCTATGGATTGTTTTGA

Protein:

Promoter(3k):

>AM03G023550.1
CGGTAATTATGACCAAAATTGGATCCGTCGAAAACTTGCGAGGATAATTGTGGGTTCAGGTACCGACGAATACTTTTCGTTTCCTACCGTCTTTTTCGTTGAAAATTGCAAAAGTAAAACGACCACTTACCGATAGTATTTGTCGTCAAAAATGTTAGGGTCACTAGGCCGTAGGTAACTTGTGTAGGTAAAACACAGTCTTCTTGTACTGTAATCTACACTGGGGAACCTAACTGGCCACGTCTTTACCAATTTGTGTGGTTCTCTCCTCCCAATAGAGTTTTTGTTACACCCAAGACTCAAACATGAGACTTTGGGCCGGGGTATGATCCAAACTCAACTATCGCTCAGATTAACCCGTATTATTGTACAGTTTTATGCCTATATATTGTTAGTGTTTTCTATAAGCAAATGTATTAATTAAAAAATACTAGAGATACCTCAACCTAAATAAATAAAAAGTCAATCAAATGCGTTTAAGACACAAGAGTGACTTTTGCCATCAACTCAAAATATCAAGACCCGAGGGTCTACCCATTTTACTGATAAACTACCTCTAAGAAACCGTCTTAATGTGATTAAACAAATTTGGTATATTAACCACCAAACCTCTAAACGAAACTGAACTACGAACTAACCATAATGTATATTGTTTAAGGGTTTGGATTGTGTACCTTATTTGTTCCTATCTTTCTCTACCTTTAGGCAAAACTTGAGACAATACAGGTACAATATGGTAATTTAAAATAGAGAGAAAAATGAGAGACGAAGCAAATGATGAGAGATAGAGAAAAAGGTATAGAAAGATAGGAACAAATAAGGTAGACAATCTACCAACAAGGGTTGGTCTAAGTGGTAACTGGATTTGGATCCCACTCCAAGGTCTCGGATTCGAATCTTAGGTGTGGCAAAAACTTGTTGGGAGGGGAGAACCACATGGGCCGGCAAAGCCAGAAACTCGTGGCCAGTCAAGTTCTCCGGCGTAGATTAATCACCAACAAAGCTAGTGAAAACTACACACCAATGATATGATAACAAAAAAAACAAGGTAGACAATCCAAACCCAGTGTTTAAGTGTTGAAAGTGTTGTTTTTCAATCACCTCACTACACATAATAGAACCCACATTTTTCTCTACTTTTCCTCCCTTATTGACTGAAACAAGATCGAGCTGTAACTCACATCATTTGTTCAAGTCAATAACGAGTTCAAAATTGTGTAGTTCATACATACAGTTTTGGTTTTGACATTTCCCGATGCCTAAAACAGATGAAAAACGCGCAAAGTATCCATCCCTTTGACCAGTAACCACTCTATTTGTTTGTTTATATTTTTCTCCCAAGAGTTAGCTCGTAAAAATATAAAAGAAACCTCTCCATTTACTTGTATATATAATATAATTTATAGTTATTCTCCCTTTTACTTAATTTAAAAAATACAATCAATAGGTAAAACATTTTAACTGATATTTCTTAGTAAATTTTTTTGAAGTAATTTCTTAGTAAATTTAAATATGATGCCTGATTAAATTCAATTTAAGTTCTCATCAATAAAATTATCTTAAATAACACCTTTTCACGATACGCAAGAGAAAAATAATTGAAGCGGCCAATTCTCACTTTATTGCTTAAAAACAATGCTGATATAAAAGTACTTTTTTTTAATATATCTGTTTCAAAGTGTGAACGCTAATATAATAATATTTATAAAGAGTGGTGGAAATTGCATAGTTGTCTTCATGATGGTGATACAGTACATATAAATGAAATAAATGAAAGTGTCAACAAAAATAAGAAGAGAGAAGAGACCTGGGGCTAGTGCTACAGTGCTCTCAATAATATTTTTAGAACTCTATATTTATTTGTATTTTTGTTCAATTTCTATTTTAGGGGGAGGTTTTGAGTTAGTGGAGTATCTCACGCTTCAAAACGAAGCAAAAGAGTTTGATGAGGTGGCGTTTTCTGAAAAAGACTTAGCACGTGTGGACCATGTCGCCTCCCTTAACAACACGTGTCAATGGTCACCAAAACTACCTATTCAAGAAAATACACAAAGAGAGAAAATCAAAGTTGTATGAATTACCGTAAGGTCTGTTAAATATTTTGGGTTCCAACTCATTTGTGTGTATAATTTTCAAGTGGTATTTGTCATTCCGGACCAAAAAACTAAATCAAATACTACAAAATAATTTATTATAAAATAATTAATTTATCTCGTATATATTTAGGACCACAACTCATAAGAAATTGACATATCATAAAAATTATTGTCTTTTATATCGTCTTCAAAGTTACACATAATATTAATTCTTATTAGTTTTTTTTGTTATCGCGTAATTGGTGTGTAGTATTCTCGCTGATAACTAATCTATGCTGCAAAACCTGATTGGCCATGTGTACCCGACTTTGTCGGTCTGTATTGTTCTCCTCTCCAAATAGAATTTTTGACACACTTAGGACTCATCTTGAAAGGTACACATACTATTAATTCTTATTAGTCTTTTTTGTTGCTGTGCTATTTGTGAGCAGCATTCATGCTGATGACTAATCTATGCTGCAAAACTTGACTGACCACGTGTACTCGACTTTGTCGGTCCATATAGTTCTCCCTCAAATAAAATTTTTGCCACAATCAAATCTCGAAATCGAGACCTTAAAAGAGGATCCGAACTCAGTTACCACTCTTACCTATTCTTACTGGTTTTTACGCGGCTGTGTATGCCGATTAAACTCTAAAATAATTACAAAAATAATAAATAAAAGACAAATTGCGGTAGTGGGCTAGGAGGACTTGAAAACCAAAGAGGAGTGGAAATTTTATATATAAATAAGTAGGTGGTGGTGCTCTATCTTAACTAGTTCATGTGTGTGCATATTCTTGTAAACTCTGAAGTATTCTTCTCATTCTCTCTCTCCTCTATATCTCTCAATATCAACTTGAAGTTGAACCCTTCAGTTTTAGGATAGGCTTTGTTTGGCATTCCTATTTTAGTGAAAGAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00249.34	Myb_DNA-binding	14	61	7.20E-28
PF00249.34	Myb_DNA-binding	71	111	7.20E-28
PF13921.9	Myb_DNA-bind_6	17	76	2.00E-16
PF13921.9	Myb_DNA-bind_6	73	120	2.00E-16

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:1901141	regulation of lignin biosynthetic process	Biological Process
GO:2000652	regulation of secondary cell wall biogenesis	Biological Process
GO:0009094	L-phenylalanine biosynthetic process	Biological Process
GO:1902680	positive regulation of RNA biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0AA86RPX8	_

SwissProt

SwissProt term	Description
MYB20_ARATH	Transcription factor MYB20

KEGG

KO	Description	Enzyme
K09422	transcription factor MYB, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G16600	myb domain protein 43
Medicago sativa L.	MsG0580028921.01.T01	_
Oryza sativa L.	LOC_Os08g33150.1	MYB family transcription factor, putative, expressed
Cucumis sativus L.	Csa008131	_
Glycyrrhiza uralensis Fisch.	Glyur000730s00036461.1	_
Codonopsis lanceolata	Cl_chr01_38570T	_
Arachis hypogaea L.	AH13G41870.1	Protein ODORANT1 like

Expression pattern