Gene detail

Detail information of Am03G021770.1 Annotation

Gene ID	Annotation
Am03G021770.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G021770.1	mRNA	Chr03	64033180	64039137	+

Sequences

CDS:

>Am03G021770.1
ATGGATTCCGACTTCCCCAACAAAGCGTTAACCACCACACGTTTTTCCGAGCTTAACCCGCCACTTTCCGACCCCGTTCTTCAAGCCCTATCTCACTCAGGCTTCGACTTCTGCACCCCCGTTCAAGCCGCCACCATTCCTTTGCTCTGCACCTTCAAGGATGTCGCTGTCGACGCCGCCACTGGTTCAGGAAAAACCCTAGCTTTCGTCCTTCCCCTCGTTGAGATTCTTCGCCGCTCTTCTTCTAATCCCAAGCCTCACCAGGTACTAGGAATAATTGTATCTCCTACAAGGGAGCTATCATCCCAAATATATCATGTTGCACAACCTTTCATTTCAACTCTATCGAATGTTAAATCGATACTTCTCGTTGGTGGAGTGGAAGTAAAAGATGATATGAAGAAAATAGAGGAAGAAGGAGCAAACATATTGATTGGCACGCCTGGGCGGCTACATGACATAATGAATAGAATGGATGTGTTGGATTTTAAAAATTTTGAGATTTTGATTTTGGATGAGGCGGATAGGCTCTTAGATATGGGATTCCAGAAGCAGTTAACTTCCATCATATCTCAATTGCCTAAACTTCGAAGAACTGGTTTATTCTCTGCTACTCAAACTGAGGCTGTAGAAGAGCTTGCCAGAGCAGGGTTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACAAAGGCAGCAAATGATCTCGCAACATCAAAACAATCAGAATCTTCAAAGACACCTTCAAGTCTTCACATTGAGTACTTGGAATGCGAGGCAGATAAGAAACCATCCCAGCTAGTTGATTTCCTAATTAAGAACCGGTCAAGGAAAATTATAATATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTTCTTCCTCGCCTGTCTGTTCTGAAAGGCTTCTCCCTGATCCCGCTGCATGGAAAGATGAAACAGAATGTCAGGGAGAAAGCACTAGCTTCTTTTACATCCCTTTCAAATGGAATTCTTTTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTCTTCATACATAGAGTTGGTCGAACTGCTCGGCTGGGGAAACAAGGACATGCTATTGTCTTCTTATTACCAAAGGAGGAAGCATATGTAGAATTCCTGCATATAAGAAGAGTTCCTCTTCAAGAGAGAAAATGCTCTGATGATGCATCTGACGTTGTTCCTGAGATTCGTTCTGCTGCAAAAAAAGATCGTGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTTAGATTGAAAGAACTTGAAATTGGCAAATTGGCTATGGGACATGGCTTACTGCAACTTCCTTTGGTGCCAGAGGTAAAGCGCTACGCACTATCTACTGAGGGATTTGAACCAGTTGAAGATATCAACTTTGAGGATATTAAGTTCAGGGATAAATCACGACAGAAACAAAGGAAGAAAAACCTGATAGCAAGGAAAGAAGCCAAGGAGAAAGAGCCAAAATCTCAAAAACTAAAGAAAACTCCAAATGCACCTAACAATGTCATGAAGAAGAAAACAGCCAAACAAAGACGTGCTCAGCAGACAATGGAAGACGAGGAAGAGTTGATGCAAGAATATCGCTTGTTGAAGAAATTAAAAAAAGGGACCATTGATGAGAATGAATATGCCAAGTTAACGGGCGAGGAATTACTTTGA

Protein:

Promoter(3k):

>AM03G021770.1
CTAATCAAGAGGTAGATCGTACTTTGACTGCTAGGGAGTCTGTTATGAAACTGCTGGAATATCATCTGCTTCGGGCACAGAATCGTATGGCTCAACAAGCCAACAAACATCGTACCGATAGGGTGTTCCACATTGGTGATTTTGTGTTCCTCAAGCTGCAGCCTCATAGGCAGGTAACTGCTAAGCAACAAGCTTATCATAAGCTTTTTCCTAAGTACTATGGTCCATTCAAAGTGTTGGACAGAATTGGAGAAGTTGCATACAAGCTAGAACTGCCATCTTCAGCTGACATTCATGATGTGTTCCATGTCTCACAACTGAAGAAATGCTTCATTCCATTTACTGCGAGATTCACTGATCTTCCTTCTAATTCAGCAGCTCCCAAGGTTCCTATGGCCATTTTTGATCGTAAAATGGTCAAAAGAGGAAGAGCTCATGCAACAAAAGTCCTGGTCCAGTGGCAAGGAGAGTCCCCAGATGATGCAACATGGGAGTTCTTTTATGATTTGTTGAAGAGATTCCCTAACTTTCATCCTCGAGGTCAAGGATTTTGCTGAGGGAGGGGTATTGTCACAATTATTGAATTACTGGTTTACTAGTTTATTTTATTTCTCATTATTTCCCCTTTTTTCTGTTATTGCATTTTGTTGAGGGTTGTATTTGCTGACATGGCACTTCACACCTCACTTTACTTTTTCCCACTACGTATCTTTTATGATTTGGTGAATATCCTTGTAACAGAATTCTCTACTATTACTTAAAGGAAATGAATGAAAGAGTGCACAGCATCTGGCACATTTAACAAAACTCTTCTTCTCTCTCATACTTTTTCTCTGTTGATTTCATTAACTTACTGAGAGTTCAAATTCTGTTCTAATTCATCAGATTTCCTATATCAGTAACTGCGCTCTTCGAAGCTCACCTTCCTAGGGTTCATTTCCCCCTCTCAGGCCTATGTAGGAGGAAGACGAAGGAACAAATCTTATTCGCTGTTGTGTTGTGTTCAGTACCGTGGGTTCTTTGTTTTCTTGCTTATTTGCTTAATTCACCTCACTTATTTGTACAAATTACCCGGTTGGGACAATTCTGGTAATGACATTTATACATCAGATTAGATTCGATTTTTTACGGAGGATTCGAAATAAATATTTAGTATTTTGATTTTTGAAATATTTAAGACGGGTTTAATTAGTATACAGATGCTTTTTAAAAACTTATTACTATCCCAAGTAGGTAGCTCAGTTGGCGAGCTAAGGGATACCGAAGAAGTGCATCAAATGAGTGCAAGAAGGAGGTCCCGGGTTCAACTTTCGGAAACTAACATTCCACCACCCCACTAACATTGCTTATAAAAAAAACAATAATAATAATACATGGTAGGGATGACACTTTTACGTGGTTACTAATTGAGTAGCTTCTTTTTAATGATGTGTCACCCTCCAATTGGTCGATAGTGTAAAACATATATACACATATTATGTATATAACTATATAAATTAAACTCATTTAAGATTTGGAATAGGCTAGTTCTTTTGAGGTAATTCCGGAACACAGTTTTTAAAAGATTTTCGGAATTATGTGTTTTTGGCATAATTCCGGAAGTGAAAAATGTGTTCCGGAAATTTTTTTAGGAATCAGGGTTAAAATCGTCCGTTTGATGAATTGTGGGGGTACAAGTAGAGCTGTCAATTCGGGCGGGCCGGGCCCATTCGGGCCAAAGACAATTTCGGGTTCGGGCGGGCTGGGCCAAATTTACTCCGGGCTCAAAAATAACCAGCCCTATGCGGGCTGTGGGCCATTCGGGCTGGCCCATGGGCTCTTTAATTCAATTTTTTTAACTAAAAACTGATTTATATTTCCAACTGATTTATAACCATCAGTATAACTTTATAAGCATATGATATTTTTGAAATATAAATCAGTTGGCTCTTTAATTCATATGATTTATAACCATGAGTATAACTAAATATCATATTTTTGAAAAATTTCCAACTGATTCATTTGGCCCGAAGCATATGATATTTTTGAAATATTTTTGTGGCATTTACGCATGACCCGTAAACATAAATAAGCACAAAATATATAATAAGCATAAATAAGCATGACCCGTAAGCATAAATAAGCATTTACGATTGATACCAAATGTCATTTTTAGAGTTGTATCTGATTTCTTCAAAATATATAATAAGCACAAAAGAAACATAAAAGAATTGTTGGGCTTCAAAACTTGGCCATCTATAGATAAATAAGCACAAAATAGGCACAAAATACAAAATACAACCGTTTTACTTTTGCTTATTTTGATAAATAAGCACAAAATACTAGGTACTGTTCATCATATAAAATAGGCCTTCAAAATAGGCAACAAGATGGTGGAGGAGGAATGAGAAGAGAGGAACGGTGGCCTCTGAAACTGAAACGCGATGGTGGAGGAGGATGCGTGAATCGTGATTCGTTTCGTGATGCGTCTCTTTTCTTTCTGTTACTTTTTTTATTATTTAGGTTTAGGAAAAGCTGGGCCAAATCAAATTGGGCTGGGCCAAAATTTTTTTTGTTCAAAACACTGGGTCAGATTTAAAAAAAATGTAATTACACTATTTTTTTTTAAATTGTCGGGCCAGCGAGCTAGCCCAGCCCATGACGGGCTGGCCCATAACAGGCTGATAAATTTTCGGGCGGGTTCGGGCTGGGCTACAATTTTTTATCGGGCGGGTTGGGCCGGCCCAAATCACTTATTTTGTCGGGCGGGTTGGGCTCATTTTGACGGCTCTAGGTACAAGGGAGGATATGGGGGTAAAAAAACAGCCTTTACTTATTTCTAAAGGGAATGTTAGCTTATTCTTTTATAGTTACTGGGGGACTTGGCAATATTTAATATTATGAGGGGGCTCCATGTTATTTTCATTAAAATTACCCTAACTCAAGGAGCGAGGAGCAACCAAACAATCACTGCATAGACGAGCGAAGAGTGAGAGAGTGAACGGCGCAATAGCAGTAGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	39	213	3.00E-43
PF00271.34	Helicase_C	263	375	7.70E-25
PF13959.9	DUF4217	416	472	4.50E-18
PF04851.18	ResIII	53	200	3.00E-07

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003723	RNA binding	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0140098	catalytic activity, acting on RNA	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0016787	hydrolase activity	Molecular Function

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR025313	Domain of unknown function DUF4217
IPR011545	DEAD/DEAH box helicase domain
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site

trEMBL

trEMBL term	Description
A0AAN9JWX8	_

SwissProt

SwissProt term	Description
RH18_ARATH	DEAD-box ATP-dependent RNA helicase 18

KEGG

KO	Description	Enzyme
K14809	ATP-dependent RNA helicase DDX55/SPB4	[EC: 5.6.2.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G05450	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Medicago sativa L.	MsG0380015516.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa018288	_
Glycyrrhiza uralensis Fisch.	Glyur004630s00043046.1	_
Codonopsis lanceolata	Cl_chr03_46630T	_
Arachis hypogaea L.	AH20G15710.1	DEAD-box ATP-dependent RNA helicase 18 like

Expression pattern