| Gene ID | Annotation |
|---|---|
| Am03G020850.1 | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am03G020850.1 | mRNA | Chr03 | 60443064 | 60451345 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00271.34 | Helicase_C | 486 | 603 | 1.10E-15 |
| PF07717.19 | OB_NTP_bind | 828 | 907 | 2.70E-09 |
| PF01485.24 | IBR | 1604 | 1660 | 9.60E-09 |
| PF04408.26 | HA2 | 665 | 758 | 2.80E-07 |
| PF00270.32 | DEAD | 283 | 436 | 2.60E-06 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | RBR |
| GO term | Description | Category |
|---|---|---|
| GO:0005524 | ATP binding | Molecular Function |
| GO:0016740 | transferase activity | Molecular Function |
| GO:0016787 | hydrolase activity | Molecular Function |
| GO:0003723 | RNA binding | Molecular Function |
| GO:0140096 | catalytic activity, acting on a protein | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR017907 | Zinc finger, RING-type, conserved site |
| IPR001841 | Zinc finger, RING-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR013087 | Zinc finger C2H2-type |
| IPR044066 | TRIAD supradomain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR002867 | IBR domain |
| IPR007502 | Helicase-associated domain |
| IPR001650 | Helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR002464 | DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site |
| IPR042035 | DEAH helicase, winged-helix domain |
| IPR011709 | DEAD-box helicase, OB fold |
| IPR011545 | DEAD/DEAH box helicase domain |
| trEMBL term | Description |
|---|---|
| A0A1S2YBJ2 | _ |
| SwissProt term | Description |
|---|---|
| DEAHB_ARATH | ATP-dependent RNA helicase DEAH11, chloroplastic |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G01020 | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related |
| Medicago sativa L. | MsG0380012112.01.T01 | _ |
| Oryza sativa L. | LOC_Os03g17432.1 | pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed |
| Cucumis sativus L. | Csa004191 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000099s00014967.1 | _ |
| Codonopsis lanceolata | Cl_chr01_03220T | _ |
| Arachis hypogaea L. | AH20G12580.1 | Uncharacterized protein like |