Gene detail

Detail information of Am03G020560.1 Annotation

Gene ID	Annotation
Am03G020560.1	TCP-1/cpn60 chaperonin family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G020560.1	mRNA	Chr03	59021250	59026432	-

Sequences

CDS:

>Am03G020560.1
ATGGCGCTGGCTTTCGACGAGTACGGAAGGCCGTTCATAATCTTGAAGGAGCAAGAGTCGAAAAGCAGGCTTCGAGGTCTCGATGCTCAGAAATCTAACATCTCCGCCGGTAAAGCCGTCGCTCGTATTCTCCGAACCTCTCTCGGACCTAAAGGCATGGACAAGATGCTCCAAAGCCCCGACGGCGACGTCACCATCACGAATGATGGAGCAACGATCTTGGAACAGATGGATGTTGACAACCAGATTGCAAAGTTGATGGTGGAGCTGTCTAGGAGTCAGGATTATGAAATCGGTGATGGTACTACTGGAGTTGTTGTGTTGGCTGGAGCTCTTCTTGAACAAGCTGAGCGACTCCTTGAGCGTGGTATTCACCCCATTAGGATTGCCGAAGGTTATGAAACGGCATCCAGAATTTCTGTTGAACATTTGGAGCGTATTGCTAATAAGTTTGAATTTGGAGAAACGATTTTGGAGCCTTTGATTCAGACTTGTATGACTACCTTGTCCTCAAAAATTGTGAATCGGTGTAAGCGTAGCTTGGCTGAGATTGCTGTCAAGGCTGTTGTTGCTGTTGCTGACTTAGAGAGGAAAGATGTTAACTTGGATCTTATCAAAGTGGAAGGAAAAGTTGGTGGGAAATTGGAAGATACTGAGTTGATTTATGGAATTGTTGTTGACAAGGACATGAGCCATCCCCAGATGCCAAAGCAAATTGAAGATGCTAAAATTGCTATCTTGACTTGCCCATTTGAGCCCCCGAAGCCAAAGACCAAGCATAAGGTTGATATTGATACAGTGGAGAAGTTTCAAACATTAAGGAAACAAGAGCAGAAGTATTTCGATGACATGGTTCAACAATGCAAGGATGTGGGTGCAACCCTTGTCATCTGCCAATGGGGTTTTGATGATGAAGCAAATCATCTCTTGATGCACAGGAACTTGCCAGCTGTTAGATGGGTTGGGGGTGTTGAGTTGGAATTGATTGCCATAGCAACAGGTGGAAGAATTGTTCCTAGGTTCCAGGAGTTAACTCCAGAAAAGTTGGGAAAGGCTGGTGTGGTTAGAGAAAAATCCTTTGGCACAACAAAAGACCGAATGCTGTACATTGAGCATTGTGCAAACTCTAAGGCTGTAACAATATTCATTCGTGGAGGTAACAAAATGATCATTGAGGAGACAAAGCGCAGCATTCATGATGCACTGTGCGTGGCTAGAAATCTTATTCGCAACAATTCAATTGTATACGGTGGTGGTTCAGCTGAGATTTCATGCTCTATTGCCGTGGAGGCAGCTGCTGATAGATACCCTGGAGTGGAACAGTATGCTATTAGAGCATTTGGGGATGCTTTGGAAGCTATTCCAATGGCCCTTGCTGAAAATAGTGGCCTCCAACCAATTGAAACGTTATCTGCTGTGAAGTCTCAGCAAATAAAGGATAATTACCCGCACTTTGGCATTGATTGTAATGATGTTGGTACTAATGATATGCGGGAGCAAGATGTCTTTGAGACTTTGATCGGGAAACAGCAACAGATCTTACTTGCAACTCAAGTTGTCAAGATGATATTGAAAATTGATGATGTTATTTCCCCATCTGAGTACTGA

Protein:

Promoter(3k):

>AM03G020560.1
AAACCGCTGCTACATCAGTCACACGGGATTCCGTGTTTTGACTTTTCCCTTTCCCTCCATCATTACTCCCTCCGGCCCCACCTGCATCCGTTTTTGAAAACCGCTCCCCACTAATTCCTCCTCTCCCATCCTTGCCACCTGTACCATTATTATTCCTGTCCCCTGCATTCATTGCATCCAACGGCCCCACCCAATCAGCTTGTCCCTTCTCCCTCAGGTAGCGAGATCTGGGAGCGCCTCCACCCCTTCTGATTTCAGCTTTGAGCTCCGGGCCCCACCCCCTATAACCATCATCTGACTGCATATTGAATAATTCAGAACAAAAATTCTCCATGTGACCCAGGCGACCACACAAATAACAAAAGACTTCGAGACGCTCATACTTAAAAGTAACAGTTTTTGCTTCCCCGCCCGGCTTCTTAATTTTTTTAGAACGTTTCAAAGGTAACCAGACATCTATCAGCACCCTGATTCTCATGATCGGTCTCCAAAAACTTGGTGAATTTTTAGCATCATACTCCAAAAATTCTCCTATAAAGTTCGCAAGACTTCTTCCGACCGACTCCGCCATAAAACCAGTTGGAACATCATAAACTTGAACCCAAAACGGAACTTTATAGAGTGGGACATCTCCAGGACTGACTCCCTCTGGTAGCACTCCTAAGACCAACAGATGTCTATCAAACGACCATGGACCCTGCTTTAAGATCCTCTGGATATCCAACTGATGGAAGAACTCGAACACAAATAACCCAGGCTCCACCTCCTCGATGACTACACCCTTCCCCGGACGCCACACATCAGCCATACGATCTTTCATAACTTGAACTCGCAGATTCTTATCGGTAAGAAAACGTCCTACTACTCTCAGTGGTTGAAGCTTCTCCACTCTCTCCTCTCCTTCCGTCAATACCTCCTCCTCCCCCTCCTCCTCTCCTAGAGATAGTCTGTCCATATCAGCAAAGAAACCCTAACAACTCAAAGTAATGGTGAATAGGAAATTTCGAAACCCAAAAGACTCAAAGAACTCACGCTCAGGGAGAAAACTCACACTTTAGGAAAACCTCACACTCTCACACGAAGGGAGAGACGCTCTCACATAGAGAGAAAACACACGAAGGGAGAGACGCTCTCACATTATTATAGGATATAAGATTCAACTTATATATATTCAGGGGCGGATTTACATGTGCAGCTACACACTCTCACATTTAAAAATGTGCACCAATACTCCTATCAAAAATATATTTTGAGACTACTAATTTTGTTTTTTTGCACACCTTGCTACTATTTTTTTCTTTCCATTCCTAGCCACTCTTTCCTATTGCAGCTTTAGGTGCGGTTGGTAGTGTAACTATTGGGTATCCAAAAATAATATATGTATTTGAATATTAGGTATATTTTACATTTAGCTACCCCAATAATATGTTATTTAGCTATTTCAACTAAGTTTATTTGTCTATGGAGATAAAAGAACAATAACAAGTCCATTAGTTTAATTAGTCTCATTAGTCTATTATTATCATAATCAAATATGGTGGTTTTTGTTAACTTGGTGATTTTAGTCATTTTATTTTACTTTTGACAATTTTGGTCCCCATTTTTCTTAATTTCGCAATATTTTCCCCTCAAAATCATATATTATTTGCACCGTTGGTCCTAAAAATCTTGAATATTGGAAAAATGAGGGAATAAAATTGCATGATCCGTGATTTTTAGCAACCAAAAGTGCAATGAAAAAACCACAATGACCAAAATTACCAAATTAGAAGAGCAAAATATGTTTAATTGGTATACACCATAACTGTAAAAACATTTTAAGGTAGGTGAGATAAAGTCAAACATTTTTATGATGTGTTGTTTTGTGATTGACCGACGTTGTAAAAACTTTTCTACACGACGATTTATATTAATTCGACGCAGGCCAGGCCCAGGCCACGCAAATCCTAGCTCGACCCAGCCTATTCCCACCCCTAACTAGTTTATGCACAAGTCTTTAAACTAGTTGCACAAGTAGACATAAGTCTTTCGGACTAAATCTATGACTAGTTTTTGGACAAATTTGTGCATTAAACCTTTTTCTTTGCGACTAATTTTGATACCAATCTGAATAATTTTAGGACAGTTTGCACAACTTGGCACATATTGACATAAGATATAAAAGAGGCTAACAAGCTATATTAGACTTCTAAAACAGCCTACAACAAATAATGAGTTAGGCCCGAACTTGATTTGTTAGAACATACCAAACATAATCAAGTAAAGCCTTGTTAGGTCTAACCTACTTCCACTCTCTCTCTCTCTCTCTCTCTCTCCCTCCTTCTCTCCCACCTCTTCTCTCCATTCACATGCCCTACTTCCTAGTCCCAACGCCCACCCCCGCCCCCCAATTCCACAATGTTGACCTTGAGTTTTCCCCAATTTTTCTTCTCAATATACTTAATATTTTTGTGTTTTGGACTACAATAAAATAAAATTCAGGACGCAATAACATCACCATAATGAACTACACGTGACAACGAATGAAGTTGAAGAAGCAAATCAAGCGTGTGAGTGCCGTTAGGTTGGGGTTATGTGTAATGGTGTGAGAGAGGTTTAAATAGAGCAGGGAGGGGTGTGAGGTTAGGTTAAATGGGTTAGGGTCATTTTAGTCTTTCGATTGGATAAAGGGTGGGGTAACTGAATTAGAGAGGTGGAAATATGAATCCCCATTGCCGAGTATAAACAGAACTGACTAGCCCAGCCCATCCAAGTGCATGAAAAATTAGCCCAAGTGTATGTCTAAATGACCCCCAATCGGGCTGTAATTGAAAAATCTGAGAAAAAGGTGGGAAGCAAAAGGAAGTAGTAAGAGGTTTTGTAGCGTTGTTCAAGCATAGCAAGTTGAGAGAGTGTAGTTGTTGGTTCTTTAGGGTTCTACACTCTTCATTTCCGATCGCAGTTTTTCAGATTGCGAGCGAAGAAAGAAAAGTGTTAAAGATCGTGATCGTGTAAACAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00118.27	Cpn60_TCP1	40	531	7.90E-159

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0140662	ATP-dependent protein folding chaperone	Molecular Function
GO:0006457	protein folding	Biological Process
GO:0051082	unfolded protein binding	Molecular Function
GO:0016887	ATP hydrolysis activity	Molecular Function
GO:0005524	ATP binding	Molecular Function

InterPro

InterPro term	Description
IPR027410	TCP-1-like chaperonin intermediate domain superfamily
IPR012718	T-complex protein 1, epsilon subunit
IPR027413	GroEL-like equatorial domain superfamily
IPR027409	GroEL-like apical domain superfamily
IPR002194	Chaperonin TCP-1, conserved site
IPR002423	Chaperonin Cpn60/GroEL/TCP-1 family
IPR017998	Chaperone tailless complex polypeptide 1 (TCP-1)

trEMBL

trEMBL term	Description
A0A1S3TJ09	_

SwissProt

SwissProt term	Description
TCPE_ARATH	T-complex protein 1 subunit epsilon

KEGG

KO	Description	Enzyme
K09497	T-complex protein 1 subunit epsilon

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G24510	TCP-1/cpn60 chaperonin family protein
Medicago sativa L.	MsG0380016246.01.T01	_
Oryza sativa L.	LOC_Os06g36700.1	T-complex protein, putative, expressed
Cucumis sativus L.	Csa011405	_
Glycyrrhiza uralensis Fisch.	Glyur001331s00031405.1	_
Codonopsis lanceolata	Cl_chr01_23320T	_
Arachis hypogaea L.	AH10G08270.1	T-complex protein 1 subunit epsilon like

Expression pattern