| Gene ID | Annotation |
|---|---|
| Am03G019450.1 | Pectin lyase-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am03G019450.1 | mRNA | Chr03 | 56005666 | 56009059 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00295.20 | Glyco_hydro_28 | 65 | 330 | 2.70E-83 |
| PF00295.20 | Glyco_hydro_28 | 339 | 409 | 2.70E-83 |
| PF12708.10 | Pectate_lyase_3 | 25 | 271 | 7.00E-07 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0016020 | membrane | Cellular Component |
| GO:0010047 | fruit dehiscence | Biological Process |
| GO:0009901 | anther dehiscence | Biological Process |
| GO:0046576 | rhamnogalacturonan alpha-L-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronide lyase activity | Molecular Function |
| GO:0009057 | macromolecule catabolic process | Biological Process |
| InterPro term | Description |
|---|---|
| IPR011050 | Pectin lyase fold/virulence factor |
| IPR012334 | Pectin lyase fold |
| IPR006626 | Parallel beta-helix repeat |
| IPR000743 | Glycoside hydrolase, family 28 |
| trEMBL term | Description |
|---|---|
| A0A371HWW4 | _ |
| SwissProt term | Description |
|---|---|
| PGLR3_ARATH | Probable polygalacturonase At3g15720 |
| KO | Description | Enzyme |
|---|---|---|
| K01184 | polygalacturonase | [EC: 3.2.1.15] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT4G35670 | Pectin lyase-like superfamily protein |
| Medicago sativa L. | MsG0380016146.01.T01 | _ |
| Oryza sativa L. | LOC_Os01g07790.1 | polygalacturonase, putative, expressed |
| Cucumis sativus L. | Csa003051 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000705s00027471.1 | _ |
| Codonopsis lanceolata | Cl_chr03_18430T | _ |
| Arachis hypogaea L. | AH16G45470.1 | Probable polygalacturonase At3g15720 like |