| Gene ID | Annotation |
|---|---|
| Am03G019430.1 | Pectin lyase-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am03G019430.1 | mRNA | Chr03 | 55923196 | 55926754 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00295.20 | Glyco_hydro_28 | 65 | 375 | 3.60E-72 |
| PF14244.9 | Retrotran_gag_3 | 397 | 447 | 2.60E-09 |
| PF12708.10 | Pectate_lyase_3 | 30 | 272 | 2.00E-08 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0004650 | polygalacturonase activity | Molecular Function |
| GO:0005975 | carbohydrate metabolic process | Biological Process |
| GO:0016829 | lyase activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR029472 | Retrotransposon Copia-like, N-terminal |
| IPR011050 | Pectin lyase fold/virulence factor |
| IPR012334 | Pectin lyase fold |
| IPR006626 | Parallel beta-helix repeat |
| IPR000743 | Glycoside hydrolase, family 28 |
| trEMBL term | Description |
|---|---|
| A0AAN9QDS0 | _ |
| SwissProt term | Description |
|---|---|
| PGLR3_ARATH | Probable polygalacturonase At3g15720 |
| KO | Description | Enzyme |
|---|---|---|
| K01184 | polygalacturonase | [EC: 3.2.1.15] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G17200 | Pectin lyase-like superfamily protein |
| Medicago sativa L. | MsG0580026015.01.T01 | _ |
| Oryza sativa L. | LOC_Os07g10740.1 | polygalacturonase, putative, expressed |
| Cucumis sativus L. | Csa003051 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000705s00027471.1 | _ |
| Codonopsis lanceolata | Cl_chr01_10710T | _ |
| Arachis hypogaea L. | AH16G45470.1 | Probable polygalacturonase At3g15720 like |