Gene detail

Detail information of Am03G019150.1 Annotation

Gene ID	Annotation
Am03G019150.1	ubiquitin-specific protease 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G019150.1	mRNA	Chr03	55033013	55037526	+

Sequences

CDS:

>Am03G019150.1
ATGGGTAAGAAAGTCGGAAAGAAGGCCCGAGGTTCTGCTAAGGAGAAGGCGATTGCTACCCATTTGCCGAAGAAGGTTACAGAAATGTGCAATCCAACTGTTGAGTCTGTTGATGAGGGGGGTTCCGTTGCAAAAGAGACAAATTCTTGCCCTCATCTGGTTAAAGGTGTTAATTTAGATAGTTTGTCTGGTAAGATTGGGTCTTCTGAATCCATAAGGTGTGAAGATTGTAGGGAAGGGGCAGCTGATAGGAGGGGTGGTAAAGGAAAGGGTAAACATGGGAAGAAGAAAGGTGGTGGTGCATTAGATTCAAAGTCGATATGGGTTTGTATGGAGTGTGGTCGATATACCTGTGGAGGTGTGGGGCTACCAGCTATCCCTCATTGCCATGTGATTGGGCATTCAAGGAAAAATCGGCACTCGTTAGTGATTAATTTTGAGAAACCTCAACTGTGTTGGTGTTTTCCTTGCAATATGCTTATTCAAGTTGATAAAATTGAAAAAACTGATGAAACGAGTCATCCTATATCTGATGTTGTGAAATTGTTGAAGGCACGATCATCGGAAAAATCAACTGTGAATAATGAGGACATTTCCATTGGGGATGGCAGTATTACTTCAGACATTAAGTCTGGATCTTTGTTTACAAATGATTCATATGGACAAGGTGGTTATGTAGTTAGAGGTTTGCTTAATCTTGGGAATACCTGCTTCTTTAATTCAGTCATGCAGAATCTGTTTGCGTTGAATACATTTCGAGAAAATGTTCTGAAGTTAGATGCTCCTGTTGGGCCTCTGGTTAGTTCCTTGAAGAAGTTGTTCACTGATACAAACCCAGAATCAGGGTTGAAAAATGTTATAAATCCGAGGTCCTTTTTTGGTTGTGTATGTTCTAAGTCTCCCCAATTTCGAGGATATCAACAACATGACAGTCACGAATTGCTCCGCTGTTTACTGGATGGGTTGAGTACTGAAGAAATAGCTGGAAGGAAGCAGAATGGTTCTCCCAAGAGAGGTGAGACCTCTTCCAATACTTTAGTTGATGCTTTATTTGGGGGTCAGATATCTAGTACTGTATGTTGCATTGAATGTGGCCATTTCTCAACAGTGTATGAGCCTTTTTTAGATCTTTCCCTCCCCGTTCCAACTAAGAAACCTCCACCTCGGAAGGCTCAACTAGTACCTCGAAACAAAAAAGCAAAACTTCCACCAAAAAAAGGAGGAAAGACTCGAGTCAAAGTTAACAAGGATGCTGATCCCTTACCTGTTCAAAGTCTATCAAACCAACTATTCAGTTGTGAATCATCCTGCCCTGATCAATCTGTCATATCAGTTGCTGGAGAAGTGGTTGCATCTTCTAGTGATTCTACAGTGTTAGGATCTGAAGAAATCAGTAGCGCAGCCAACAAAGAGAACCCGTCGTCACCTAATTTGCCTACTGTTGGAGAGTCCCAACATACACATGTGCTTGACAATGGTGCAAAGAAAACATCAGAGTCATTGGATGATTTTGCGTGGTTGGATTATGTGGAAGCCGAAACTATGGTAAATGAATGTGCTTCTATTCCCGAGAAGGAGGATGTGCTGGAGGTACAGGATACCGAGTGCAAGGATGGCTGTTTGAATAAGTCCCCTGAACAAGCTAGCTGTGAAACCAGCAGTTCTGTTTGTTTCCCTCAGGAGGATCCAAACCTAAGACCTGATTTTCCTTCAGCGAATGGGTGGGAAGACGAGGTTCCATTACAAGTTCAAAGCTCAGAAGTGCTGTTACTTCCATACAAAGAAGAAAGCTTCTCAGCTGGTGATATCATTGGAGGAGATGGTGAGGCCTCCTCATCAGTTTTGGGTGGGAGTAATCAAGAATCAGAGTTTGATGGCTTTGGTGACTTATTCAGTGAGCCGGAAGTTGTTGCTGGGCCTGCTCCTAGACCATCTTCATCTGGTGACATGGGAACTGGTTCTGTCATTGGAACCAACAGTGAGTCTGATCCAGAAGAAGTAGATGACACAGATTCTCCAGTCTCTGTAGAGAGTTGCTTGGCACATTTTATAAAACCCGAGCTTCTCTCAGAAGAAAATGCTTGGCATTGTGAGAACTGTTCAAAAATTCTCCTAAGGCAAAAGAAAGAAGCAAAAGAGCAGGGAAAAACTCTATCTGATGGGGATGAAGCTGGTAGTCATATTGAATCATGGCGTGCATCTAACTCTTGTTCTGTTACAGTCAGAAGCACAGAAAATGAGGATATAAAAATTGAAAAAACTGTGGAAAGCTTGATTTCACATGTCAAACATGACACAGGGCTTGAAAACGGTCAAACAGATGAGCTTAATTTAGCTGTTACCGAAAGGGACAGTGAGGCATCTAAGATGGGAGATACGAATAATGATGAATTGCAGTCTTCATGCTTACATAAAGCTTGCAATGAAGAAAGCCGCAATAATGCAGCGGCTGATTCTTGTATTACTGGAACTGTCGAAAGAGATCCTCCAATGTGTGATGATAACAATGACTCAAAAGAATGCAGCGGGAAAGAGACTGACTTGAAATGTGTGAAAGTGAAGAGGGATGCAACTAAGAGGGTCCTTATTTATAAAGCTCCACCTGTCTTGACCATTCATCTGAAGAGATTCAGCCAAGATGCTCGTGGTCGCTTAAGTAAATTAAATGGTCATGTCAACTTCAGAGAAACAATGGATCTTAGACCATATATGGATCCCAGGTGTGTAAGTGAAGAGAAGTATGAATACCACTTGGTTGGTGTAGTGGAGCACTCAGGAACCATGAGAGGGGGTCACTATATTGCCTATGTGAGAGGGGGGCAGAAGAACAGAGGGAAGGCTGATAATAAAGAAAATGAGGGTTCTACATGGTATCATGCGAGTGATGCCTATGTGCGTGAAGTTTCCCTTGACGAAGTTCTTCGCTGTGAGGCGTACATTTTATTCTATGAAAAAATTTGA

Protein:

>Am03G019150.1
MGKKVGKKARGSAKEKAIATHLPKKVTEMCNPTVESVDEGGSVAKETNSCPHLVKGVNLDSLSGKIGSSESIRCEDCREGAADRRGGKGKGKHGKKKGGGALDSKSIWVCMECGRYTCGGVGLPAIPHCHVIGHSRKNRHSLVINFEKPQLCWCFPCNMLIQVDKIEKTDETSHPISDVVKLLKARSSEKSTVNNEDISIGDGSITSDIKSGSLFTNDSYGQGGYVVRGLLNLGNTCFFNSVMQNLFALNTFRENVLKLDAPVGPLVSSLKKLFTDTNPESGLKNVINPRSFFGCVCSKSPQFRGYQQHDSHELLRCLLDGLSTEEIAGRKQNGSPKRGETSSNTLVDALFGGQISSTVCCIECGHFSTVYEPFLDLSLPVPTKKPPPRKAQLVPRNKKAKLPPKKGGKTRVKVNKDADPLPVQSLSNQLFSCESSCPDQSVISVAGEVVASSSDSTVLGSEEISSAANKENPSSPNLPTVGESQHTHVLDNGAKKTSESLDDFAWLDYVEAETMVNECASIPEKEDVLEVQDTECKDGCLNKSPEQASCETSSSVCFPQEDPNLRPDFPSANGWEDEVPLQVQSSEVLLLPYKEESFSAGDIIGGDGEASSSVLGGSNQESEFDGFGDLFSEPEVVAGPAPRPSSSGDMGTGSVIGTNSESDPEEVDDTDSPVSVESCLAHFIKPELLSEENAWHCENCSKILLRQKKEAKEQGKTLSDGDEAGSHIESWRASNSCSVTVRSTENEDIKIEKTVESLISHVKHDTGLENGQTDELNLAVTERDSEASKMGDTNNDELQSSCLHKACNEESRNNAAADSCITGTVERDPPMCDDNNDSKECSGKETDLKCVKVKRDATKRVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVNFRETMDLRPYMDPRCVSEEKYEYHLVGVVEHSGTMRGGHYIAYVRGGQKNRGKADNKENEGSTWYHASDAYVREVSLDEVLRCEAYILFYEKI*

Promoter(3k):

>AM03G019150.1
CCCAATTCCATTAATCTTCAAATGAGAGGTATCTAAAATTCTCTCCATTAATAACTTATATGCAGACCGAACACTATAGCAACGCGAGGATTCTGGTTGCCAAATACAAGCATCTTCGGTAATAACAGTGAAAAGAGGAGTATTAAGAATAGCTTCAACAATTGGGGGAGTAAAATATGCTTGAATCAAATCAACCCTCCAAGTTCTTGACATATCATCTATTATATATTAAATCAACAACCCGAAGGATTAAACATGATTGAGTCGGCAGCAGTAATCTGATCCCTTGCCTTTGTCCATCTCTCTCCAAAAGTGTTGATATTCAAACTATCACCGATGACCCACTGACACCCTTCGTTAAGGACCAAACGCGCTTCATGAATACTTCTCCACACAAAACTAAAATTTCTTCCCCTCTCTACTTGCATGAAGTCACAATGAGGATAATATTTGGCCTTATAGATCGTGCAACAAGAGAATCGAGACATAAGATGCCACCCTTGCTTACCCAAAAGAGCAATATTGAAAACATATAGGTTCTGAAAGCCATGCCACCTTGATTTTTGGCAATGCACAAATTATCCCAAGAAAGCCACCAAATTCCTCTTCTACTAGACCCATTACCACCCCACCAAAACCCATCAAACATACTTTGGATTTCATCTCCCAACGAAGAAGAAAGTAACAATAAGCTCATAAAATACGTTGGGATTGAATGGAGGACAGACTTAATCAATACTTCCTTACATGCTTTCGAAAGAGACCGACCACCCTAGGAGTTAATTTTCTTTCAAACTCTATCTTTGATGAATTTAAACAAAGCCTTCTTGCTCCGACCAACCATAGACGGTAGGCCCAAATGCCTCCCAGTCCCCAGGCACGTATTAACGCCCAACACACCAACAAGGTTGTCCTTACCACCCGAAGAGACATTTTTACTGAAAAATATCTTTGACTTTTGGAAATTAACTTGCGGACCTGATGCTTTCTCATAGGTGTCCAAAATAGTCTTCATATAAAATATCTCTTTGGGATTGACTCTGGAAAATAAGAAACAATCGGCTGCAAATAGCAAATGGGTTATAGTCGGGGCTCCTCTACATATCTTAACACCAGGTAAATTACCTCTTGCCTCAGCCTGATGAATAAGAGACGTTAGTCCTTCAAAGAAAATAATAAACAAATAGAGACAAAGGATCCCCATGTCGAAGATCCCTCCCATGAAGAATTGGCCCCACTGGCTCCTGATTAACAAAAAGAGACTCTATACACATTTTGACCCAACCAATCCAATTATCAGCAAAACCAAGTTTTTCAAAACTAACAACATTAATTAAAGCCAATGTTGATTTGCGGTAGTACGCTAGTCAAAATAATTAAAGGATAAAATATAGTATCAACGCAAGAGACCTTAGTCGTCTCACAAGAACCTCTAAACACTGAAATTATCAAAATCAAAAAGTACGAAATCAACAATAACAAAAGGTTTTTTTTTACGAAAATGGTTTCTATTGGCGGTTTTATCAATTTAGAAAAACAAACGATTCACTGGTTTTCGGGCAATCTACTCGGATTACTCCGAACATAGGTGAGAAAATCAAAAAAATTCAAAATTTATTTGTTTACTATTTCTAATTAATTATTTGAATTTTATGTCAAAAAAAATTCAAATTTTTTGGATAATCTTCTTTTGATTTTATTAGAATTTTAGTGTTGTTTTTATATTTTTAAATTAATTTGGATTGGTTTTTGATGTTCTACCTTAATTTTAGTCATAAGTAGAACTCTTTGGGAACTCTTTATAAAAAAAAGATTTTTTTATCTCTAAGTCTAAAAGTGGACGACGCTCCCTAACCCTATCCCTACCGCGAGATCTATGTTTGAGACCCAAAGTACCGTTGTTAAGGTGAACATACTGGAAATAATTAGGGTATATTAACCCTCAGAAGAGGGTTGGATCGGGTAGTAGTGACCCGACTATACTGGTAAACAAATCCTGCACGTCTCTCTCTCCTCTGTGAGAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGCATCGTTCCCCCGCGCTACACACCGGAGTCTTCCACCATACTCACTCACTTTGCATCTTTCAATCACTGATATCACTTTTTTTTTATAGGTTTCATCTTCCTTCCACTCCCACCCAAATAAAGGTACTCTCTTTATATTAATTGATGATTAATGCCTTGTTTGTTTCTATATCATTAATCACTCACGTCATTCATATTTCATAAATTGCTTTGATTCCCAATATCCTCGGTTTTACTAATCGATCTGATTCTTTCAACTTCTGCATCTGTACATTATCATCACTAGGGAGGACACAGCTATATATCTGAATTCATGTTTGTGCGTGATTCTGCTTTTGATTACTTGTCAGTTGTCACTTACTTTATATCATTATTATATAATCTGAATTCACGCTTCGTGTATTTGATTTTCAACTCCACCGATTAACCTATTCTTTAGTTTCTCTTGGGTAGTGTGATCATAATTAGGTTTGCATTTGGAATTGGCTGCACAATTTAATTTCTTGCAGACTTCTAAGCCTAACCATGGTATATAGATAGATAGATAGATATATATGTGTGACTGAAGTGCTCTATCTCTTTTTCTGCTTATATAAACTTTTTAAAATCATTTCAGGTCATATTGGATAAGGTTGTATGTCTTACAACTTTCTTTGTACTATAACAAGATTGGATTGGAATTTAGTTTATCACTACTTGTACTGAACTTTCCTCTTTGAAGTTTGAGGACCCTTGTTTCACATTTCCTCCTGCCCTCCTGATTTGCAGGTAAAAGATTTAATGTATTTTAATGTCCTCAATTTTGTTAGTTTTTCTTCACTGCTTGCATGTGTATATACTGGCAACATATATAGCTATTTAATTTAATAGTAGGGAGTGGAAATCTGTTTTCCTCTCTGTAGTATGCTGGAGGAGTTCACAGATTTGTTTTCGATTATAGGAACTG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00443.32	UCH	229	983	1.00E-52
PF02148.22	zf-UBP	74	163	1.40E-11

Gene family

Gene family	Subfamily
Ubiquitin Family	USP

Gene Ontology

GO term	Description	Category
GO:0005829	cytosol	Cellular Component
GO:0005634	nucleus	Cellular Component
GO:0008270	zinc ion binding	Molecular Function
GO:0006508	proteolysis	Biological Process
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR001607	Zinc finger, UBP-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR018200	Ubiquitin specific protease, conserved site
IPR028889	Ubiquitin specific protease domain
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR038765	Papain-like cysteine peptidase superfamily

trEMBL

trEMBL term	Description
I1MY83	_

SwissProt

SwissProt term	Description
UBP2_ARATH	Ubiquitin carboxyl-terminal hydrolase 2

KEGG

KO	Description	Enzyme
K11844	ubiquitin carboxyl-terminal hydrolase 16/45	[EC: 3.4.19.12]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G04860	ubiquitin-specific protease 2
Medicago sativa L.	MsG0380016111.01.T01	_
Oryza sativa L.	LOC_Os09g32740.1	ubiquitin carboxyl-terminal hydrolase family protein, expressed
Cucumis sativus L.	Csa000220	_
Glycyrrhiza uralensis Fisch.	Glyur000125s00010036.1	_
Codonopsis lanceolata	Cl_chr08_34770T	_
Arachis hypogaea L.	AH11G14150.3	Ubiquitin carboxyl-terminal hydrolase 2 like

Expression pattern