Gene detail

Detail information of Am03G019080.1 Annotation

Gene ID	Annotation
Am03G019080.1	RING/U-box superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G019080.1	mRNA	Chr03	54874566	54877331	+

Sequences

CDS:

>Am03G019080.1
ATGGAGGAAGCAATGGCGTCGAGATATTGGTGTCACATGTGTTCTCAAATGGTCAACCCCATAATGGAAATGGAGATGAAATGCCCATTTTGTCAAAGTGGATTTGTTGAAGAAATGAGTAACGCCGCCTCTGGTGGCAGCGACTTGCACAGTATGCCTGAAGCTGATCTTGGATCCGATCGGGCTCTCTCCCTCTGGGCACCAATATTGTTAGGCATGATGGGCAATCCACGGCATCGTCGAAGACTGAGACGAATAGAGCTTGATGACGACTACGAGAATACTAATCCTGATGGTGATGGTGATGGTTTAGCACGACACCGAGGAGGACTTGAATATGATCGAGAGCTAGCACGACACCGTGGAGAAATAGAATATGATCGAGAGCTTGAGACCATCCTTCGAAGGAGGAGGAGAAGCTCAGCTACCATTCAGTTGCTCCAAGGCATAAGAGCTGGACTTACATCTGAATCACATGAGAATACCGACAGTGATGACCATGCTAGGGAAAGAGAAAGAGAGCATGTAATCTTGATCAATCCTTTTAATCAAACTATCATAGTTCAAGGTTCCTATGATTCAAACCGGGATCAAGGTGATAATCATACCACCATTGGGTCTCTAGGTGACTATTTTGTAGGGCCTGGTTTGGATCTATTGTTGCAACATTTAGCTGAGAATGACCCCAATAGATATGGAACTCCACCAGCACAGAAGGAGGCCATTGAAGCTCTACCTAATGTGGAAATCAAGGAGAATCTGCAGTGTTCTGTTTGTTTGGATGATTTTGAAGTTGGTTCTGAAGCAAAAGAGATGCCCTGTAAACATAGGTTTCATAGTGCATGTATCCTGCCATGGCTGGAGCTTCATAGTTCTTGTCCAGTTTGCAGGTTTCAATTGCCATCAGATGAATCTAAGCAAGACTCTGATGTGTCAAGGAATAGCAGAAATCAAAGGGAAGCTAGGGAGCATGAAAATATTGGACATGATAATAATACTGAAGAAGGAGATAGTGAAGTGAGAAATGCAAATGGGGGTAGAAGATTCTCATTTCCATGGCCTTTTAATGGATTATTTTCTTCATCATCTTCTAGTTCCAATGGAAACGGAAATGGTACTCAATCAGAACACAACTGA

Protein:

Promoter(3k):

>AM03G019080.1
CAATGGAGCAAGTAGCGGATGAGTATTATCTGTGCCCATGGATATCCATAGACATCCCTAACACTAACACTAAATTGTGGTTAGTATGTACTAACCAGTGTTTTCATTTACCCGCTCACTCACCACACAAACACTAAATTGTGGTTAGTATGTCCTAAACATTGGATTGTTGTATAATGGTCACCAAAAATTTAGTAATCGTTACTAAAGAATTCCTAAGTATCATGCATAAGTCATTACCATCTACTATATCTACTATATATCTATCTACTATATCTACTTCTACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATCAAACAAACCACTACCAAAAATACTTAATTACTCATTTCTAAAAATATGACACATTATCAATTTTAAGGACAAATATGTCATTTTCAATTATTTTATCTCATTTTTTCCTTTCTTTTTCTCACTTTTATCTTTTGTGGGTCACTCTCACATCATATTTTAATTTTTTATTTCATTTCTAAATCTCATTTTTCTCTTCTCTCTCTCTCTCTTGTCTTTTCCACACACACTCTCTCTCTCTCACTCACTCACTATTCTATAGTAGATATCTCCCTCCATTATCTCTTTTCACATTTTAATTTTTTTAATTTATCTACTATTCTACTATAAATATAACCAAACAAACCACTACCAACAAAAGAGGCAACGGGAGAAATAACGAGAAAGACAACGGTAAGCCGCAACGGGAATGGCAACGAAAGACTAGAAACGAGAGAGGCAACAGAAAGCGGCAATGAAGAGCGACAACAGGGAGCAGCAACAGGAGCGACAACGAGAGACCGGCAACAAGAAGTCAATGGAGAGCGTCAACGAGAGCAACAATGGATGTGTATATCTTATATTAGATCTCATTTTCTTTTTTCTGATTTTTACTCCATTATTAAAATTAGAAGAAGATACTGACCTTTTTTTAACTTTGTGCGACACGAGTTTTTTAAGCAAGTTGAAATATATGTTTTTTATTGAGTTTTTCATTTTTCATTTATTAAAATTTTACAATTTTCAAAATATTTGTTAGCTCATAACAAATTATAACAAATACAATGTCACTCGTGCGTATGCACGGATAAAGTACCGGTATTGAGCTAAAGAAAAGTCTAGAATTAACAACATAGTCTTAGACTCTTAGTCTTGGTCTTCTTTTTTTACCAAACTTAGTCTTGGTCTTAAAAAATGGTATCCCATTATAATATATTTCCACTCATATGTTTCATGCCGTAGAGATAGTTTAGTTTGTTAATTTAGAGTTTATCAAACAAAAATTCATCTCCCCTGGCTTTATTAATTTTATTTTTTTACCATGTCGTTGGTGCGTAGTTTCCACCGGCGGGGAACCTGGCTGGCCACGAATTTCCGACTTTGCCGATTCGTGTGGTTCTCCCCTCCCAACAGAGTTTTTGCCGCACCCAAAATTTGAACCCGATACCTTATTAATTATTTATTTTGCTTAAACATAAATCATGGCAAGCATTTTTTTATCAAAATCATGACAAGTATTTAAATAGATTAACAAACTAATTCAGACTTTTAAACAGACCGAGCGAAACTCTAAAACAAAAGTCAATCACAAATCGTAATATGCCTTACATTTTTGAATTAGACCACACCTATTTAATCAAAGCTAATTCAAGTACCCCTTTCCTCCTCTAATTGTGGTGTAAAAGTAAAACATATCATTTAAAATCTATATATTATTTAATTGTTTTTTACAAAACTCTATATCTATCTATTATTAAAAACAGCAAAATGTTAAAATCGTTAATATAGTTTAATTGTGATTAGAAAAAGTACTAAAAATATAAGCAAAAATGAGGTAAGATGCGGTTGTGATTGGACGGTCCTAAGAACCACTTTACCCAAATTCCTTCTTCCATCTTTCGCTTCCTGTTTGCAGCACACAAAACCCCCCCCAAAATTATGTTCAAATCGAAAACCTTTCTTCGTTGATTTTGGTTAGTCTTTTCTTTACTCTTCCATTCAATTTTTGACACTTTCCTTTCCATTTATTAATTACTGTGTCAATTTCTTTCCATTTATTAATTAATTGTTTATATTGCGTGTGAATACAATCAATCGTGTTGTTGCTTTGCAGCTTCTGCGATGATAATCATATTTATTTCCTTTTCTTGTACTATTCATTCTCAACTACGCTTAAATTCACCGATCTAAAGTTGTGGGCCGTGACGTGTTTTTGTTATGTCAATCGACGCTTCCAGATCCTTCTCGTAGTTGTTTTTTTGAGTTTTATTTTTTTTCATAAACCGATTCGAGTTATTTTTTCTGCTGTTCATGTTTCGTAAAACCCTCGCTGAACAATTTTTTGTGGCTGCTGCTATTTCATCGTTCTTTGGTTAAGGTGATGATTCCTTTTTTATTATTCCTTTCATTTTACTTTTTTTTCTTTTACCTGATTATTTGTTGTTTCGCGGTTTTAGGTTTTTTTTTGGGGTTTTCGGGTCCTTTTTTTAAAAATAAATAAATATATATTCTATGGTGATTTTGTGCCATTTCCTGTATAATTAACGCTTATCAAGAGTGAATTATATTTTCCGCTTTCTGGTTTATGAGTTTTGTTCAATCAATTATTGATCTTGATTGCTAGAGAATTGAAATCATTTTTAGAAAAGAAAGAATATAATCTTAATCGTGGTTTGATCTTTTCTGGATGAATTAGTGAATGTTTGGTTTGGTGTTTAGAAATGCTCAGATCATGGTTTGTGAAAAAATTTGTCTCTTGTAGTTTTTGCCCAAACCATGAAGATTTGGAATGCCAAACCAAACAATCTTAATTTTGTGACTCTAATGGCTGCTGAGTCTTGGCTTTTGATTCAAAGTTGTACTGGCTTGATGTTTCAGGAATCAAGGAATAAAACATCTGTGATCTTTGGAGGACACATTCGTGAACAGACATT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13639.9	zf-RING_2	255	297	9.00E-13
PF14369.9	zinc_ribbon_9	7	39	1.60E-11
PF13923.9	zf-C3HC4_2	255	296	2.90E-11
PF17123.8	zf-RING_11	255	283	6.50E-10
PF00097.28	zf-C3HC4	256	296	3.50E-07
PF12678.10	zf-rbx1	272	297	9.90E-06

Gene family

Gene family	Subfamily
Ubiquitin Family	RING

Gene Ontology

GO term	Description	Category
GO:0005737	cytoplasm	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process
GO:0016874	ligase activity	Molecular Function

InterPro

InterPro term	Description
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR039525	E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon

trEMBL

trEMBL term	Description
A0AAN9QDS9	_

SwissProt

SwissProt term	Description
SIRP1_ORYSJ	E3 ubiquitin-protein ligase SIRP1

KEGG

KO	Description	Enzyme
K11982	E3 ubiquitin-protein ligase RNF115/126	[EC: 2.3.2.27]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G56340	RING/U-box superfamily protein
Medicago sativa L.	MsG0380016103.01.T01	_
Oryza sativa L.	LOC_Os03g59760.1	RING finger protein 126, putative, expressed
Cucumis sativus L.	Csa020217	_
Glycyrrhiza uralensis Fisch.	Glyur000125s00010053.1	_
Codonopsis lanceolata	Cl_chr08_37780T	_
Arachis hypogaea L.	AH01G01400.1	RING finger protein 115 like

Expression pattern