Gene detail

Detail information of Am03G018770.1 Annotation

Gene ID	Annotation
Am03G018770.1	Rubisco methyltransferase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G018770.1	mRNA	Chr03	53874112	53877616	+

Sequences

CDS:

>Am03G018770.1
ATGGTAGAAGCTTCAGGGATGAGGATGATGCACACCTACACCACCCTTATACCTTCTCCTTTCACCCGAACAACCCAGAGACTCCATCATCTACCTCTCTCTGTATCACGCAGACACCATAATCTTCACTTTTCAATCTCCGCAACAACTACAAATGCTCCTGCCACTCCCTCCGTAGTCATGGAAACCATTCCTTGGGGTTGTGAGATTGATTCCCTCGAAACTGCTTCTTCTCTCTTGAAATGGTTGTCAGACTCAGGCCTTCCACCCCAGAAGATGGATATTGGTATTGTTGATGTGGGTGAGAGAGGTCTTGTTGCCTCCAAAAATATAAGGAAAGGAGAAAAGCTTCTCTTTCTCCCTCCTTCACTAGTCATCACTCCTGATTCTGAGTGGAGTTGCCCAGAAGCTGGTGAAGTATTGAAAAGGAATTCAGTTCCGGATTGGCCATTACTTGCAACTTACCTCATAAGTGAAGCTAGCCTTATGGAATCTTCAAGATGGAGCAATTATATATCCGCTTTACCTCGTCAACCTTACTCACTTCTTTACTGGTCACAAGTAGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAGAGAGCAATGGAAAGGATCAATAATGTTATTGGAACATACAATGATATGAGACTCAGAATATTTTCCAAATACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATAGAGTCCTTCAAATGGTCATTTGGCATTCTTTTCTCCCGCATGGTTCGGTTACCCTCAATGGATGGAAAGGTTGCCTTAGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGATGTGGAGACATTTTTGGATTATGATAAGTCGTCGAAGGGAATAGTCTTTACGACAGATCGAACCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAATAAATCAAATGGGGAGCTTCTGTTATCTTATGGATTTGTTCCAAAGGAAGGCACTAACCCAAGCGATTCGGTTGAGTTGCCACTGGCGCTCAAGAAATCTGATGAGTCTTATAAGGAGAAGTTAAAACTGTTGAAGAAGTATGAATTATCAGGATCCCAATGTTTTCCTGTAAAGGTTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGTGGGAAATTTGAAGAGATGGCTGCCGCAGCATCAAATAAAAGTACCTCCAAGAAGGACTTGAGATATCCTGAAATAGAAGAGCAAGCATTGCAATTCATACTAGATAGCTGTGAATCCAGTATATCAAAATACAATAAGTTCTTACAGGTAAGTGGAACACTGGATTTGGACGTGACTTCTCCGAAGCAACTCAACCGAAGACTCTTTCTAAAACAACTGGCCGTGGACTTGTGTACTAGCGAGCGAAGGATATTATTTCGTGCTCAATATATACTTCGAAGAAGACTGAGGGATATGAGGTCTGGTGAGTTAAGAGCCTTGAAAATCTTTGATGGGTTTCGGAATCTTTTCCAATGA

Protein:

Promoter(3k):

>AM03G018770.1
TAAAGTTATCCAGTTACCCCCCTGACGTTAAATTTTCTGTTAAAAAATGTAAAATATCACATATCCAGTTACCCCCTGCCACGTGTCACCATATTATTGGGCCTCTGTGACACGTGGCACTGACTGCCACGTCAGCATCCTGGTCAACAGTGCCACGTCAGCAACCAATGGATGGCTGCCACGTGGCACTACTTATATCACTCAAAAATAAATGTTTTTGTCCCCAATGGGTGTTGAACTCATGACCCCCCTACTCACACTCACACCTCCTAACCACTGAACCAAATTATTACTTGTGATTAATAACACCACTACTAATATATATTACATAATTGGTACTTAAATTAAAAAAAAAAACATCAGTTCATCATTCATCATCGGTTCCAGCAACATCAATCTCTTCTGTTCACGACGTCTTTCGTTCCTCTTTCGTTCCAGCAACACAGGTCTTGGAAGCGCGTTCCAGCAAAACAGTGGGTTTGAGTGCGAAGGAAAGAATTAGGTGAAAACAGTGGGTTTAGGGAAGCGCGTTCCAACAATCGTTGAAGATGCAAACGAAATGGAAATGAAAACGAAATGGAAATGAAAACGTATATTTCTGGGAAAATGCATCTTCCATTAAAACGCAAACAGATTTATTTGATTTCGTTTTGAGATTGAAGAAGAAGAAACGTTTTCAGATCTGGAAAGAAGAAGAACAAAAATGGAATCCAGATCTCAAATTTCGCTTTCTAAATTCGTTTCCAGATCTGCAAAAAACACAACGTTTATCCATATGGCTGTTGATTTTCGTTCTTGTTTCCATATGTTCATAGAAAACGCAGATGATTTTCGTTGTTGTTGTTGTTTCCATTTTGGGATTTTACATCCACTGTTCATTGAAGTAGCAATTATGTGTTTGATTTGTTGATTTCCAGAAAATGATGTTGAAGTAGCAATCTGATTTGTTGAATGATGAACTGATGATGAACTGATGTTTTTTTTTAATTTAAGTACCAATTATGTAATATATATTAGTAGTGGTGTTATTAATCACAAGTAATAATTTGGTTCAGTGGTTAGGAGGTGTGAGTGTGAGTGGGGGGTCATGAGTTCAACACCCATTGGGGACAAAAACATTTACTTTTGAGTGATATAAGTAGTGCCACGTGGCAGCCATCCATTGGTTGCTGACGTGGCACTGTTGACCAGGATGCTGACGTGGCAGTCAGTGCCACGTGTCACAGAGGCCCAATAATATGGTGACACGTGGCAGGGGGGTAACTGGATATGTGACATTTTACATTTTTTAACAGAAAATTTAACGTCAGGGGGGTAACTGGATAACTTTATATTTTGCAAGGTTTGTTTTAAATGTTTTTTTTTTGTAGGGGGGTAACTGGATAATGGGTATATTTGCAGGGGGGTAATATATATTTAAACCAAAAAAATATTAATTTTGCCAAACATGGGTCTCGATCTTGTGACCCCTGAGTGATGAGTGATGAGTGATGCAAACTCACTTATACCACTAAACTCACTTAATTTCTACAATTGTTCATCTCCCAAACGAAAATCAAAACGAAATATGGAAAATGAAATTGGTTCATGACTGCATCGTTCATCTTCATCCTCGAATCAGATCTTCAACAACAACAACGAATCAGATCTTCAACAACAACAACAACGATTCAATTGAAAACCCCTAATTTCAAAAATCCCTAATTTCATTTTCAACAACAACAACGATTTTCGTTTCTGGGTTGATAATGATTAATTTCGCATTTCTGGGTTATTGATGATGATTAAAAAGAAATGATTTTTGTTGTTGTTGATGTTGTTGAAGATGTGATTTTCGTTTCCTGAAACACAAAACCCAAAAATTTGCAATTTTCGTTTGTGATTTTCTTTTCCAGAAATAATCTTCGTTTCATCTTGTTTGCGATTTTCGTTTCCTAAAACACAAAACCCATAAAATTTCTGTTTCAATGGTGTTGACGTTGAGGAAAATGAAGATCTGTTTTTTCTTTTTGTTTTTTTAATCGAATTATGTATTATATATTATTAGTTGGCCTAAATTACTCAAGTGAGTAAGTGGCCTAGTCGTATGTGGGAGTTGGTACCACTCTGAGGTTGTGGGTTTGATCCTCATGTCCACCAAAATGCTTATTTTTTTAGTAACAACGGGTCCAATATTGCCATGTCAGTGCCATGTGACAGTCACCCATTGATTGCTGACGTGGTACATGTCAATGCCACATGGCAGTGGTGATGTGATTGATGATGTGGCATGTCAGTGCCACGTGGCACGATGCCCCTCCAAAACTCCCCCAAATATGGAGGGTTTTGGAGGGGCTCCAAAAATAAACTAGGAGAGGGATTTGGGGGGGTTTAGGGGGATAACTTTTCTTCTCATCACTAAAGAATTTACACTATTAGTCCCAACCCCTCGCCTCCCCTCCCCTCCAAACTCCCAAACAGACCATTGGGGATTAAATTGACCAAAAAATACATTGAGGACCAAAATGACTCATTAAAAAGACACTGGAGGATGTCTTTGCAATTTTGATACATTTAGAGACTATAATGACAATGCTTCACACATTTAGTTACCAAAATGACTATTTTTTTTTTGATTTAGGACCATTGCTCACCCACGGAGTGTCCCAACGCTTTCAACGAACTAATCTCCGCTCGCTACTTGGCAAAGATTTCGCTGGCAACAGGCCTTTTTAACGTGACTATTTACTCATAGTTAATTATGCTTATATTACTATTTCTTACGGATGGTATTATGTTTCTGTTTTTTCTTTTGAGATAATGCAAAACTAAAATGAGATTAGTTTTTCACCTTTATGATAAGGAGCATTTTAGTCCTTTACCTATGAAGAGTGATAAAGTTGGGATAGGGAGCACGTGGTGTTCTCACAACTACTGAAACTGGGAGCAGAACTCTCTCTAGCTATGGTATTGTTGTGTGAAGTTTGAGCAGATAAGGTAACGTTGCATTGTGACAGAGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF09273.14	Rubis-subs-bind	340	473	1.40E-17
PF00856.31	SET	103	307	1.90E-16

Gene family

Gene family	Subfamily
Transcription Factors Family	SET

Gene Ontology

GO term	Description	Category
GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	Molecular Function
GO:0009507	chloroplast	Cellular Component
GO:0032259	methylation	Biological Process
GO:0016279	protein-lysine N-methyltransferase activity	Molecular Function

InterPro

InterPro term	Description
IPR046341	SET domain superfamily
IPR001214	SET domain
IPR036464	Rubisco LSMT, substrate-binding domain superfamily
IPR015353	Rubisco LSMT, substrate-binding domain
IPR011192	Rubisco LSMT methyltransferase, plant
IPR044431	RBCMT, SET domain

trEMBL

trEMBL term	Description
A0A1S2YC19	_

SwissProt

SwissProt term	Description
RBCMT_TOBAC	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G07670	Rubisco methyltransferase family protein
Medicago sativa L.	MsG0380016058.01.T01	_
Oryza sativa L.	LOC_Os02g49326.1	SET domain-containing protein, putative, expressed
Cucumis sativus L.	Csa013504	_
Glycyrrhiza uralensis Fisch.	Glyur000173s00011836.1	_
Codonopsis lanceolata	Cl_chr04_23360T	_
Arachis hypogaea L.	AH04G25190.1	Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic like

Expression pattern