Gene detail

Detail information of Am03G018140.1 Annotation

Gene ID	Annotation
Am03G018140.1	phenylalanyl-tRNA synthetase class IIc family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G018140.1	mRNA	Chr03	52268947	52278967	-

Sequences

CDS:

>Am03G018140.1
ATGGTGATCTCTTCTTTGCATGCTGCACTTTCTGCCAGGGCCTTTTTCCTTTGTCGAAGTAATGTCCTAAGGAGCTTACCTTTCTCATCTTCTACTGCTTCTGTCTCGAATCACAAGCTTTCGCGGAAGAAATGGAGGCAGCCAGTTTTATCATCGTTGGAAGTTGGTGGAGTCAAAATTAATAGAGAAGATGTAGTGAGGGATGATCCAACAAATAATGTGCCAGACACCATATTTTCAAAACTTGGAATGCAGCTTCACAGGAGGGATCAACACCCTCTTGGGATACTGAAGAATGCGATATATGAATATTTTGACACAAATTATTCAAATAAGTTCAATAAGTTCGATGACCTTTCTCCTATTGTTTCAGTGAAGCAGAACTTTGATGATGTCTTGGTTCCTGAAGACCATGTGAGTAGGAGCTACAATGATACATACTACATAGACCCTCAAACTGTTTTAAGGTGCCACACAAGTGCTCATCAAGCAGAATTTTTGAGAAATGGTTATACTCATTTCCTTGTCACAGGAGATGTTTATCGAAGGGATTCAATCGATTCTACTCATTATCCTGTCTTCCATCAAATGGAAGGCTTTCGTGTCTTTGTTCCGGATGAATGGGAGGCATCCGGGATGGATGCCACATCATTTTCAGCAGCAGACCTAAAGAAATGCCTTGAGGGTCTAGCACGCCATTTATTTGGTGATGTGGAAATGCGCTGGGTTGATACCTATTTCCCATTTACTAATCCATCATTCGAACTTGAAATATATTTCAAGGAAAAGTGGTTGGAGGTTCTGGGGTGTGGAGTGACAGAGCAAGAGATTCTAAAAAGAAATGGTAAAACTGATAATGTTGCTTGGGCTTTCGGCCTAGGGTTGGAGAGGTTAGCTATGGTGCTATTTGACATACCGGATATTCGTCTCTTTTGGTCAGATGATGAACGATTTACCTCCCAGTTCTCCAAGGGCCAGTTAGGGGTTAAATTTAAGACATTTTCAAAGTACCCTCCTTGCTACAAGGACATCAGTTTCTGGATCAATGAATCATTTACTGAAAACAATCTGTGTGAGGTTGTCAGAGGAATAGCTGGGGATCTTGTAGAAGAGGTGCAATTAATAGACAATTTCACCAACAAGAAAGGAATGACCAGCCACTGCTATAGGATTGCATACAGGTCTATGGAACGTTCTCTTACCGATGATGAAATTAACGATCTGCAGTGGAAAGTAAGAGACCAAGTGCAGAGCAAATTGGATGTTGTCATAAGATGA

Protein:

Promoter(3k):

>AM03G018140.1
CTTCCGAAAAATGTGTATTTCCGGAAATTTTAAAAAAAAAAATTTAACGAAAAATTAGGGGTATTTTGGGGATTTATGGTAAAATGGGGGTATGGGGTCTAATGAGGGGGTACAAAAAAAGTGCCCATAAACTATTGGGTTTTACTGTGAATGACTCCTAATGGATGTTAGGAAATATTTGGGTCTTTTTTTATCCCCACCACATCACAATATACCCCTATCAAATATGAAAATCCCAAAATTACCCCCATAATTTTGACTCAATCAGATTTACCTTATAAATAGGTAAATCCGATTTGAGATTAATTAAAGGCGGATTTATCTACCCAGATGGGGGTACATCCGCTTTGTTATTTTTAAAATCGGATTTACCTAGTGGGTATATAAATCCGATTTCCCTAAAAAAGAAAATCGGATTTACCCCACTTAAGGTAAATCCGATTTTGTTAAAAATAATTGTTTTTTATTTAAATTTTTAAAAAAAGTTATAAAAATGCTACTAAAAATCCGTTAAAGAGTCAAAACTAATCCAAAAATTATAAAAACAGTAATAAAAAAATAGTAAACGATAGAATTTGGGATTTTGAGCTCCCCTGTCCTGAAAGAAGTCTCTTCTTCAGGAGTCTTGATCCTTGATTTTTTTTTCGGATTTAATGACTGTGGTTTCATTACAATTTGAGTAGGTTGCCCGAAAACCAATTTTTTAGCCTAAATTATTCGCTCGACGTACAACATCGTCACATGTTAACGAACTACACACTAAACAGAATCAAAAGACGGTCGAAATTCGTAGCTAATTTTTTAAGAGCGGATATACCCCCACATAAGGTAAATCCGCTTTTAAAAAGAACAAAATCGGATTTACCCCACACCTAAGTTAAATCCGCTTTGTTATTTTTAAAAACGGATCTACCCCCACCTTAAATAAATTCGCTTTTAATTTTTTAAAATTTTCAGTGGAAATCGAATTTACCTCACAAATACATAAATCCGATTTCCAAAAAAAATTGATATCAGGATATGTTTGGGTTTTTTTAATTTTGTGAAGGGCAATTATGTCTTTTCGCAGGGTTCGTGGGGGGTATAATTGAATGTGATGGGGGTACAAAAAATAACCCGAAATATTTTGGTGTTCGATATATAAAGGGCCTTTGACTAATATGTTAGATTACTGGTATGTGTAATTTGTGCGACGTATATGTAAGATTTTTTTAATGATTTAAATGACTTTAAAATATTGGATGGCCAAATAGTATATATATATATATATATATATATATATATATATATATATATATATATATACTACAATAATTGACCCGTGCTATGCACGAGTGAGAAATTTTATGCAAAGAAAAACATCTAAATTTCCTAAAAAAAGAAGGAAACATTTAAGTAGTATTGAATCTTTGTAAATAAAGACGCCCATTGTTATTAAACACCCTCTCATACTCGCTATGCGATGACTCTCTTCCTACTCTTGCTATGCTTCACCGAAGAGGTATGTCTAATGTGACTATGTGCCCCCGTTGTCAACACCCGGTTGAGGATATTTTCCATTGCCTTCGTGACTGTAATATTTCGGTCCAGCTTTGGAACTATCTTGGTGTCCGCGACCCCAGCTTCTTCAACAACTCCAATGTCCACTCTTGGCTCAAAGATGGCCTCTCTCAAGAGGACCCTTCTCTTTTCATTTCGGCTATCTGGTGGCTTTGGCGAGCTCGCAATTCTATGGTTGTAGCTAAGGAAGATTTTTCGCTTCCTACTCTGCAATATCGGACCCGTAATTGTGCTTCCTTGGTGAGTATGTGTAAGCATGTCAGCCACAGCCATGTTAATGCCCCTCGCTTGGTTACTTGGCATCCTAGTAGGGAGGATTGTATCGTGTTAAATGTTGATGGTAGCAGCCTTGGAAACCCGGGACCTTCCGGATTTGGTGGTCTTCTCCGCCACGCTGATGGTTCTTGGATTAAAGGGTTTACAGGCCATATTGGTATCACAGATAATTTACATGCTGAGCTTCCAGCGCTTCTTCATGGTGTCCAGCTAGCGTGGAATGAGGGTCATCGCCAAGTTGTTTGTTATTCTGACTCGCTCCATGCTATCCAGTTAGTGACCTCTCCTCTCAACCCATGGCATGTCTACGCGTCAATCATAGCTACTATTCAAGACATGATGCAGCGGCCTTGGCGTCTTAGCATGGTTCATACTCTTCGTGAAGGAAACATGTGTGCGGATATTTTGGCAAAGATGGGATCCTCAGTTGCCCAAGCTTTGATACTTTTAAGTCTCCCTCTCCTGACCTCCTCCACCCTCTGCAGGCGGATGCTAGGAGAATAGAGTTTTTACGCACTTAAATTTATACTTCCTTTTCTTTTCTTTTCCTTTTCCTTATTGTACCAAAAAAAATACTCACTAAACACCCACAAACACTTCGAAAAGACTAAAACATCCTTAACGATCAAAATGTTTCACACCCCAAAACTAACTTGAACTTTTATGCACTTTTTTGTTTCTTGCTCAGCTTTCTTCCTTTAACAACATTTGCATCTCAACAATTAACGAGAGTGGTGAAACTATTTTTGGGATTTTTAGAAATTAAGGGTATTTATGAGTAGGAAGGGGTGTTCAATAGGAATAGGAATGGCCATAAAAACGATATTGGTCCGAGCCCATAGCTTAACCCAACCCAAGTTCTCAAGATTCAGTCATCTCTGCGTTCCGGCTAACTCTACGATTACCGCCGCACCTTCTGGCTAGCTCTGCGTCTTCTTCTCTCATTCATTCTCCCTCTACGTCACTCTTTTAACTCTACTCTTATCTCTTCATTCTTTCATATTTATTGCCAGAGCGCAAAACCTAGCTAGAAAACCAAGAGTTCGCCGGAAAACCTTGGTATAGCGGCCGCAACTGGAAGCTTCCACCGCTATTCCGGCGCAATTTGCGCCGCGATCGCCGCACCTGAATACCGCTTCGCACCAACACTTCAATTGGGTGCCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01409.23	tRNA-synt_2d	89	322	7.20E-50
PF03147.17	FDX-ACB	335	425	1.00E-25

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006432	phenylalanyl-tRNA aminoacylation	Biological Process
GO:0005759	mitochondrial matrix	Cellular Component
GO:0000049	tRNA binding	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR002319	Phenylalanyl-tRNA synthetase
IPR036690	Ferrodoxin-fold anticodon-binding domain superfamily
IPR005121	Ferrodoxin-fold anticodon-binding domain
IPR045864	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)
IPR006195	Aminoacyl-tRNA synthetase, class II

trEMBL

trEMBL term	Description
A0A8B8L027	_

SwissProt

SwissProt term	Description
SYFM_ARATH	Phenylalanine--tRNA ligase, chloroplastic/mitochondrial

KEGG

KO	Description	Enzyme
K01889	phenylalanyl-tRNA synthetase alpha chain	[EC: 6.1.1.20]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G58140	phenylalanyl-tRNA synthetase class IIc family protein
Medicago sativa L.	MsG0780039988.01.T01	_
Oryza sativa L.	LOC_Os12g34860.1	phenylalanyl-tRNA synthetase, putative, expressed
Cucumis sativus L.	Csa000774	_
Glycyrrhiza uralensis Fisch.	Glyur000537s00024614.2	_
Codonopsis lanceolata	Cl_chr01_27290T	_
Arachis hypogaea L.	AH14G28760.1	Phenylalanine--tRNA ligase, chloroplastic/mitochondrial like

Expression pattern