Gene detail

Detail information of Am03G018080.1 Annotation

Gene ID	Annotation
Am03G018080.1	plastid ribosomal protein l11

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G018080.1	mRNA	Chr03	52214593	52217289	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM03G018080.1
AGTCCTCCTGGCTCATGTTACTCCAAAAACAGTTAAACAAGCACTGAGTGCTCCACAGTGGCAGAAAGCAATGCAAGCAGAAATTCAAGCTCTTGTAGACAACAAGACATGGACTCTCACCACATCACCTCCAAATAGGAAAGAAATTGGATGCAAATGGGTTTATAGGGTCAAAGGCTATAGTCAAATTCCAGGGCAAGACTTTGGGGAAACTTATTCTCCAGTTATCAAACCTGCCACCATTAGAAATTTGTTGTCAGTTGCTATCACCAACAAATGGGATATTCAACAAATAGACATCAATAATGCCCTTATCAATGGCAACCTTGAAGAGGAAATTTACATGGTTCAGCCACCATGTTTCACAAGCAATGATAAATCTCAAGTATGCAGGCTCCATAAGTCACTTTATGGTCTCAAGCAAGCCCCAAGGACCTGGCATGACAGACTCAGAACTGCCCTGCATCAGTTTGGCTTCACACCTAGCAAGTGTAACCCTTCACTCTTCATTTATTCATCTCCTGGAATCCAACTGTTTGCACTTGTTTATGTTGATGATATTCTCATCACTGGGTCATCCTCCTCATTGATTCATGATCTGATTCGCAAGTTGCATGCTACTTTTGCCCTCAAACACTTGGGTAAACCAGATTACTTCCTGGGATTGGAAGTCAAATATAAAAAAGATGGCTCCATAATTCTCAATCAGACAAAATACATCAAAGATCTACTCCATAAAGCTGCAATGCTTGATTGCAAGGGAATCAGTACCCCTATGGCTTCCACCACCAGACTGAGTAGATTTGGAGCTGATAAACTATCTCAACCTCATGGTTATCGTTCCTTGGTTGGAGCACTACAATATATTACACTTACCAGACCTGAAATTGCTTTTTCAGTTAATAAAGTATGTCAGTTTCTGGCTGAACCTCTTGAGTCTCATTGGAGGACAGTGAAACGTATCTTAAGGTACTTAAGTGGAACTGCTCATCATGGTTTATTGTTGCAACCAGCTTCTACAGCTTTTCCCCTCATCCTTCGTGCTTATAGTGATTCAGATTGGGGCAGTGATCCTGATGACAGAAGGTCCACCTCTGGATCTTGTGTCTTTTTGGGCCCAAGTCTCATCTCTTGGAGCTCCAAGAAACAAACATTAGTAGCAAGATCAAGTGCTGAAGCTGAGTACCGTGGCCTTCTTAATGCGACAGCTGAGCTGTTATGGATACAATCTCTTCTTCGTGAACTTAAAGTTGTGCATCAGGCTCCAGTTCTCTTGTGTGATAACCAGAGTGCTGTGGCAATAGCACACAATCCTGTCTTGCATTCAAGAACCAAACATCTAGAGTTGGACATTCACTTTGTTCGTGAACGTGTCCTTGCTAAAGCTCTCAAAATCCTCCATGTTCCTGCTTCAGGTCAATTGGTAGATATACTCACAAAACCTCTCCCTTCTCCTCAGTTTTCAGAACTCAAAAGCAAGCTTAAGGTAGTCTTTGTTCCCTACCTTCAGCTTGAGGGGGGAGTGATAGGGAATAACATCAGTATTCCCAAGCATGCAGAAGAAGGGAACATGGTTGATCAAGTGAAGAATGTCAAGGCAACTGATGTGGTGACCAAATAGTGCAAGTGTCAATGTAATTCACTAGTGATATCTGTACAGCTAATATGCTGACTAGGCAATTACAGTTAGAGCCTTAACAGACTATAAATACCTTGTATCAACAGTTTACAATCAATGAAGAATCATTCTGTTACATTCATTTCTGATTCAGTTTCTCTACAATCATCGCTTTACCACACTATGCGTTTCTTCCCTTTCATAAGGTGCATAAATGTAGATTCTTAGCAATTGCGCCTTCATGTTCTAACTGCGACCAATCATGATATGCTCTCTAGTTAGAGCATTAGTTGAGTCTTGGGCTCTTATAAATATATGCTTGCTTCTTGGGTTATCTTCCCTTTAGATACTCATTTTTCTCAGTGAGATATGGAAAATGGTTTTCAAACTACTCAAAAAAGCTTCTCATTTGAAGCGATTTCTAATTTTTTTTAGATATTCATTTTTAAAAAAATCTATAACAAAGATATGAAAACTTCAAAAAATGATTCTATCCAAAAGAAACTCTAACAAACATGCCCATAAAAATAATATAAATGTGGCTCAGCAAGTCAGCAACTCGTGAAAAAAAACGTCTCCCGTTTGTATCTCCAATGTTGTTTAAAAAAGAAAAGAAACATTTTAAGACATGGAAAAAAAGGAGAAATAATGTATTGAATGGTCGAGATCTAACACTTGAGAAACTTACGTAAAATACTAAATAGAGAGAATCCCCTCTCGCAATCCTTATGTGTAAATTGTAAAATAAGTGGGGATCAACTCAGTGGCGGACGCAGGACCCTTGATTAGGGGGTGCAAAAAAAGTCACCGCCAAAATTGCCGGTTTATATGACCGTTGAAAATTTCTATTTCAAACCAAATTATTTAGCTCTAAACTTTTTTAAAAATTAAATCCCAATTTTAGTCTCTAAGTTTACATTATTCTCATATTTAGTATATGAAAATAATAAGTAGTCCATAAAGTATGTGGCATTCGTCAAATTAATTCTCAAAGTTTTATAAGCAGACTTTTACGGAAACTAATAAGACAAAGTTCCTAAAATTTTATAAGTAGTCATTTCACAAACTATTGAGACTACTTATTATTTTTTAGGATTTAAGGATAAAGTAGAAGAGATGGTATGGTGTAAGTTCAGAAACTAAAATTAGAGTTTTGTCTTTATTTAACTGTCAAAACTAAAGAAGCGGAGAGGTCTAGGTGCAAAACTTAAAACTCACGCGGTTTAAAATAAAAAATTTATAGGGGTATAAGCCTAAATTTTTATTTTTCAGGGGTTCAATTGAAGATATTGTTCCCTGTAGCGTGTAGGATATCTGTGCGTTTTATCCGAACTCGACTCCACTCTTGTCTTCTGTTCTGTTTGCCAATTGATTCAATTTCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03946.17	Ribosomal_L11_N	78	135	8.10E-29
PF00298.22	Ribosomal_L11	140	208	6.00E-25

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0022626	cytosolic ribosome	Cellular Component
GO:0009570	chloroplast stroma	Cellular Component
GO:0009941	chloroplast envelope	Cellular Component
GO:0005634	nucleus	Cellular Component

InterPro

InterPro term	Description
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily
IPR000911	Ribosomal protein L11/L12
IPR020784	Ribosomal protein L11, N-terminal
IPR036769	Ribosomal protein L11, C-terminal domain superfamily
IPR020783	Ribosomal protein L11, C-terminal
IPR020785	Ribosomal protein L11, conserved site
IPR006519	Ribosomal protein L11, bacterial-type

trEMBL

trEMBL term	Description
A0AAQ3MN91	_

SwissProt

SwissProt term	Description
RK11_ARATH	Large ribosomal subunit protein uL11c

KEGG

KO	Description	Enzyme
K02867	large subunit ribosomal protein L11

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G32990	plastid ribosomal protein l11
Medicago sativa L.	MsG0380015971.01.T02	_
Oryza sativa L.	LOC_Os03g03020.1	L11 domain containing ribosomal protein, putative, expressed
Cucumis sativus L.	Csa015421	_
Glycyrrhiza uralensis Fisch.	Glyur001736s00033404.1	_
Codonopsis lanceolata	Cl_chr03_12000T	_
Arachis hypogaea L.	AH04G00850.1	50S ribosomal protein L11, chloroplastic like

Expression pattern