Gene detail

Detail information of Am03G016080.1 Annotation

Gene ID	Annotation
Am03G016080.1	relative of early flowering 6

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G016080.1	mRNA	Chr03	45146609	45155039	-

Sequences

CDS:

>Am03G016080.1
ATGACGGGTTCAGAAGCAAACGGCGACGTTTTCCCATGGCTGAAATCGATGCCAGTGGCGCCAGAGTACCGGCCAACCGCGGCGGAGTTCGAAGATCCGATCGGTTACATTTTCAAGATCGAGAAGGAAGCATCCAAGTACGGCATCTGCAAAATCATTCCACCGTTTCCACCGTCGCCGAAGAAAACCGTCATAGCGAACCTAAACCGCTCACTACCGAATTCTACATTCACGACACGTCAGCAACAGATCGGGTTTTGTCCACGTAAGCCCCGACCCGTTCAACGACCTGTTTGGCAAAGCGGTGGCCACTACACGTTCCAAGAGTTCGAAGCGAAAGCGAAAGCGTTCGAGAAAAGTTACCTGAAGAAACATAGCAAGAAGAGCGGTGGTAGTGGTGTTGCAAATGCTCTCGAAACAGAGACACTGTTCTGGAAAGCGACAGTGGATAAGCCCTTTTCGGTTGAGTATGCAAACGACATGCCAGGTTCTGCGTTTTCGCAGAAATATCGTAAAGCTGGTGAAGGTGCTTCTGTGGCTCACAGTGCTTGGAATATGAGAGTGGTTTCGAGAGCGAATGGTTCTCTGTTGAGGTTTATGAAGGAGGAGATTCCAGGGGTGACTTCTCCTATGGTTTATGTTGCCATGCTCTTTAGCTGGTTCGCTTGGCATGTGGAGGATCACGACCTTCATAGCTTGAATTACCATCATATGGGTGCTGCTAAGACTTGGTATGGTGTTCCCAGGGATGCTGCTGTTGCGTTTGAGGAAGTTGTTAGGGTTCATGGCTATGGCGGAGAGATAAACCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAAAACACAGTGATGTCACCTGAAGTACTTATTAATGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCACGGTTTTAACTGTGGAGAGGCAGCAAACATTGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTGTCCTCCCATGGTTTCACATTTCCAGTTGCTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATCCCCGGGGGAATCAGTGGCGAACCTCGGAGTTCTCGTCTTAAAGATAAGAGGAAGAGTGAAGGAGAAGCTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATGATCTGCTTCATGTACTCGGAAAAGGATCTGCTGTAGTACTTCTTCCTCGCAGTTCGGCTGACATTTCTATTTGTTCAAAATTACGTGTTGGATGCCAGCAACTAAAAGTGAACCCTGGGCTTTCCATCAATGTATGCAATTCTCAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTAGTGTTCAACAGGAATCGTGGAATCATGCAAGAAAAAGGTTTCTATTCGCTGCAAGACAAGTTTGGTATGTTGTGTGAAGGGAGCGAGATTTCCTCATTTTATGCAAATGGTAACACACGCACTTCAAGTTCTAAGCCACTTCAAAGAGACAGTGAGAGTGAAGCTAGTCAAGGAGATGGACTGTCAGATCAGAGACTATTTTCTTGTGTCACGTGTGGACTATTAAGCTTTTCCTGTGTTGCTGTTGTACAGCCTAGAGAACCAGCAGCTAGATATCTAATGTCAGCTGATTGTAGCTTCTTTAAAGATTGGATTGCTGGTTCTGGAGTATCTAGCAATAAGTTTACTGCTGCCCATGAAGATGCAAATATTCCTGAGTCAAATATGTATACAGTGCGTACAAAAAGGAATGCCCAAGTAGAGGCTTTAAATACTGAAAGAGGAAATGACAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCATCTGATTCTGAGGAAGATACAGTTGAGGGTCGTGAATCAAATGTGATCAACTCTACATCAGGAAGATTACCTTCTAATTTTCAAGATGCCGCTGCTAATCCCATGACTAGAATTGATAGGGATGGTGTTCTTTCAAAGAGTTCCAGTTGTGTGGCACATATGCATAGTAGATTTGGGCATAATTTGGGTCACCAGTCTTTTGACCACTCTGTCAAAAAAGAAGATCATAAACTCACTTCTGGGTCTGAATTTGAAAATACAAGGGCAGTGCCTTATTCCACCACGTATAATTCCCCAGATACTCACGGTGCTGAAAAGTCATTGTCAGTCAAGGCTATGGTTCCTGTCAATAATAAAAATGCTTCGATGGTGCCTCAGTGTGATGAAGACTCATCTAGAATGCATGTGTTCTGTCCAGAGCATGCTGCAGAGGCAGAGCAGCAACTTCGACCAATAGGTGGAGCCCACATATTGCTCTTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGTTGATGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAATGTTTCCTACAGGCATGGCACCAATGAGGATGAGGAGAGGATCCAGTCAGCTCTGGATAGTGAGGAAGTGATTCCTGGGAATGGGGACTGGGCTGTAAAGCTAGGAATAAATCTCTTTTATAGTGCAAATCTTAGCCGGTCTCCTCTGTATAGTAAGCAGATGTCTTACAATTCTGTAATATATTATGCATTTGGCTGTTTCTCCCCAGCAAGCTCACCCATAGAACCGAAGGTTTATCACAGAAGGACCAACAGGCAGAAAAAAGTAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCCATCAGGTACATCCCCTTTTAGCAAAAAGGGATTCTGAAGATGTTGAGGATGGGAAAAGCTTACATGGATGGATGTTGTCTGATGAGAAAATTGAGATATCAAAATGTATCCCGAAAATTGAAAATGTTATTACAAAATCAGGTAGGAAAAGGAAAACGACAGTAGAGAGTGGACAAACTGGGAAAGGAAGCTTTGCTGGCAAAGATGTTGTTTTGGATAATTCCACTGAAGAACCCAATCCTCGGCCGGGGAAGATTCTTAAAAGCAAGCAAGCTAAGCATGTTAAGAAAGATGCTGCAGCTGTGCAAGGGGATTATTATCCATATCCTCATGAAAAACCTATAAGCAAGCAAACAAATTGCACTGAAAGTGATGCACTTTCTGATGATTCAGTTGACGATGAATATCACGCGCAACATAGAAAGAACTTTAATGTCAGAAAGGATAAATTTATTGACAATGATGTGGTTTCAGATGATTCAGTGGACCATGATTCTGATTGCCATCGGATGGGAGAACATAGAAGCAAGCAAGTTGAAGATACAGAGAGAGATTCAGTTTCAGAGGGTTCTTTGGATGTTGGTTCTCTTCAGTTGCACATGAAGACTTCTAGAAGCAACCATGCCAACTACATTCATGAAGATGGGATTTCCGATGACCAAATGGACAATAGTTGCCAGAAGCAGCAAAATAGAATCTCTAAAAGCAGGCAAGGCAAATACCTTGCTGAAAAAGATACAGATACAGTCATATCAGATGACCAACTAGAGCTGAATATGCAGAAGCAAAGACCAATGAATCCTACAACTAGGAAAGGCAAATACCTTGCTAAAGAGGATATCGTGTCAGATGACCAAATGGAGGGATTTTGTCGCAAGTACCAAAGAAGGAAAGCTAGAGTCAGGCACGCCAAATGTGTAGCAGGGGAAGATGTAATGTCCGACGACCAATTGAAGGTCCCCTTTCACAAGCGAAAAACAAGTTTTTCTAGAAGGAAAAACAAAGGCATTGATAGCGAAGTTGAAAACGTAGTGTCTGATGACCAGTTGGAGGACCCTTTCCAGAAGCAGCAGAGAAGAATTCCTCGGCGCAGGACCAACAAACGAATAGATAAGGAAGTTATGGATGACTCGGCCCAAACTAGTGCTCGTCTGCTGCATAGAACTCCTAAAAGGAAGAAAGCTAAATGCGTGGATGGTGATGATGATATGAATTCAGATAATAATGAAATAGATGATTCTCTTCTGCAGCACGTGAGAACTCTTCAAAATAAACAATTGAAGCCAAAGACACTTAAACAGATGAAGCAATCCAATTGCCCCAGGGTGAAAAACCAGACACCTCAGCCAGTGAAACGAGGGACTCGAGTGCCAATGAGATCAAAGGCTTCTCAGAAAATAAAACAGTCTGTACAAAATGATAAACAATCCGGTAACTCTGAAGAGTTCACTTTACACACAGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGAAAGAGAATCCCGAAATCTAAGGAGTCTGAAGAAAAATTAAAAGACAAGCCAACCAAAAGGAAAAAGGTGAAGAATGCTGCAGCTGGCAACACCAAAACGAAGGATAAGGCAGCAGAATACCAGTGTGACATTGAGGGGTGCACCATGAGTTTTGGGTCAAAACAAGAGCTAGGGAGTCATAAGAGAAATATCTGTCCAGTAAAAGGGTGTGGGAAAAAGTTTTTCTCACACAAATATCTGGTGCAACACCGGAGAGTTCATGAGGATGATCGCCCCCTGAAGTGCCCGTGGAAGGGGTGCAAAATGACTTTCAAGTGGGCATGGGCACGAACCGAGCATATTCGAGTCCATACTGGTGCACGTCCTTATGTATGTGGCGAGCCAGGTTGTGGGCAAACTTTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTTAGCAAGGAGTCGTCAATAG

Protein:

>Am03G016080.1
MTGSEANGDVFPWLKSMPVAPEYRPTAAEFEDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTVIANLNRSLPNSTFTTRQQQIGFCPRKPRPVQRPVWQSGGHYTFQEFEAKAKAFEKSYLKKHSKKSGGSGVANALETETLFWKATVDKPFSVEYANDMPGSAFSQKYRKAGEGASVAHSAWNMRVVSRANGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYHHMGAAKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKNTVMSPEVLINAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINCPPMVSHFQLLYDLALALCSRIPGGISGEPRSSRLKDKRKSEGEAVIKELFVQDVLQNNDLLHVLGKGSAVVLLPRSSADISICSKLRVGCQQLKVNPGLSINVCNSQGMNSSKGFVSDDLVFNRNRGIMQEKGFYSLQDKFGMLCEGSEISSFYANGNTRTSSSKPLQRDSESEASQGDGLSDQRLFSCVTCGLLSFSCVAVVQPREPAARYLMSADCSFFKDWIAGSGVSSNKFTAAHEDANIPESNMYTVRTKRNAQVEALNTERGNDNTALALLASAYGNSSDSEEDTVEGRESNVINSTSGRLPSNFQDAAANPMTRIDRDGVLSKSSSCVAHMHSRFGHNLGHQSFDHSVKKEDHKLTSGSEFENTRAVPYSTTYNSPDTHGAEKSLSVKAMVPVNNKNASMVPQCDEDSSRMHVFCPEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKLMAEDLGIDYMWKNVSYRHGTNEDEERIQSALDSEEVIPGNGDWAVKLGINLFYSANLSRSPLYSKQMSYNSVIYYAFGCFSPASSPIEPKVYHRRTNRQKKVVAGKWCGKVWMSHQVHPLLAKRDSEDVEDGKSLHGWMLSDEKIEISKCIPKIENVITKSGRKRKTTVESGQTGKGSFAGKDVVLDNSTEEPNPRPGKILKSKQAKHVKKDAAAVQGDYYPYPHEKPISKQTNCTESDALSDDSVDDEYHAQHRKNFNVRKDKFIDNDVVSDDSVDHDSDCHRMGEHRSKQVEDTERDSVSEGSLDVGSLQLHMKTSRSNHANYIHEDGISDDQMDNSCQKQQNRISKSRQGKYLAEKDTDTVISDDQLELNMQKQRPMNPTTRKGKYLAKEDIVSDDQMEGFCRKYQRRKARVRHAKCVAGEDVMSDDQLKVPFHKRKTSFSRRKNKGIDSEVENVVSDDQLEDPFQKQQRRIPRRRTNKRIDKEVMDDSAQTSARLLHRTPKRKKAKCVDGDDDMNSDNNEIDDSLLQHVRTLQNKQLKPKTLKQMKQSNCPRVKNQTPQPVKRGTRVPMRSKASQKIKQSVQNDKQSGNSEEFTLHTEEEEEGGPSTRLRKRIPKSKESEEKLKDKPTKRKKVKNAAAGNTKTKDKAAEYQCDIEGCTMSFGSKQELGSHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCGEPGCGQTFRFVSDFSRHKRKTGHLARSRQ*

Promoter(3k):

>AM03G016080.1
ACCCCGGGCCTGACACCCCTCCTCGCCAAAAATGAATGGCCAACTAAAAAAGAGAAATGAAATGATTATCTGGAGTGGGAGATAGGTCCGTCGCCCAACAATCACAAGGACAAGACGGCTTGAAGTTGAATCTCGCTAGAGTAAAATGTCGCTCACCGGAGAACACCTCGCCAGAATCTCACCGAAAACTTGGTCGCTCGCCGGAAAATACAGGTCGCCCTCAGAGCAATCAGCGTGAAGGTAAAGTACAAAATGAAGGAATGGGGACCCTATATATAGGGAGAGCAGCAGGCTAAGGGTTGAAGCGACATGACCATTCGTTTCGAGCATTAAATGCATTTCTTGGAAATTGAACTAGCATCATTACACGCCCCCATCGAAAAACTCAAACGTCTTGTCCATCACATCGAAAGACGAAGCGTCACATCAATCAAATCTTAATTGCCACGTCACCAAAGAAAGGGACACGTCGTTCCAGTTTGAGCGGACATAACAAGTCGTCCCAACGCAGGCGACCATCCGACAACCCGACTACTCCACTGGGGGCAATCATTCTCAAGCCTGAACCCATCCCGTTGACGACTTTGGCTTGGTGGGAAACTGTTCTGGACTGGGCCGAGGGCCCAATCCGGTTGAAGACTGGCCGAGACCAGTCCATAAGATAGAAAGGGATGACCTAAACCCACTAAATCAATGGCTCAGATCAACCCGTACAGAATCCTACGGTTACCCACGAAATTTCTGACATTATATATACAGAGGTCTTACCTCAGCTGACAGGTACCTTTGGACCCATACCGTTACTCTGCTCACATTCTTACCCCATTGACTTGGGCGTCTGAGTGTCATTGTAGGTACAATCCGGGCGGAGCTTCTGCACACGACCAGCAACTCAACAGAACGACTAGACACCTCAACAGGCTATCCTGCCCGACCTTGAGGTACAGTTCAATTTGCTAATCCCCTTTTTCCTGGAAGGATTTCCTAGTTGCTAACCCCAAAAAAACGTACGTGAAACAGAACCCCGAGTATGAAGGCTTTTTCTTTTTTACTGGAACCAGCTTGAAGGTTAATTGTGCAACTAGCTTGAAGGTATAAACGTAGGTGATCGTCAATATTTTGTGAATTTTTTTTATAAATTGACTATCTTCTGTGCGCAACTACAGAAACTAGGATCACAATAGACGGCAAAGCTCTCCCTCAAAAGATTTAACAATGTTGTATGTCAAAGATTGGATTCGAATTCAGAAACTTAGTTAAGCCGGAAAACACCATTGACTTGGGCGTCTGAGTGTCATTGTAACAATGTTGTATGTCAAAGATTGGATTCGAATTCAGAAACTTAGTTAAGTCGGAAAACACCCTTCCATCCAAGGTTTTAAAAACCGGACCGGACCGGCCGGTTCAACCGGTTGAACCGGGAACCGGACCCCTGGCCGGTTGGTTCAACCCCATTTGAATCGCAGGCCAAAGAACCGCCCAGAACCGGATTGAACCGCCAAGAACCGGTAAAGAACCGGGAACCGAACCGGGTTGAACCGGTTTAAACCGCCCGAAATGCAATTTTTTATTTTTAAATTTACTTTTTTCTCCAAAATTTAATATTTTTTATTTAATAAATTACTTATCCGGTTCAACCATGGTTGAACCGGTTGAACCGATTGAACCATGAGCCGGAAGTCTCGCCGGTTCGATCTCCGGTCCGGTTTTAAAAACATTGCTTCCATCTCATAAAAGTGTTTTTGGATAATATTTTGTGAATTTGTGAAGGCTTGCTTTTTTTCTAGACTAATAAAAAAAAAGAAAATGATAGGTAGTTTGAGTACGGCAATCAAAACAAAGAAAGTACTTAACCATAATTATTAAATATAAACACAGATACAGCGTTGGTGACTGTGACGGGAGTATAAATTGATGATATGATAGGGTCAAGGGCTGGTTTGCTTTGCATGATATTTTCATCCGTCCGTCCGCAGAATTCAGTTAATTCATGCAGGCAGGACTTGCAGTTGCAAGGGAGGGGAGGCCGGAGGGGGCCCCACATCAATAACCCCACCAAACTTCCAATCAAATAAAAACACGTGTTTCGCTTTAAGCTACCCGCTCCTCTGACGTGTCATCAGTTTGTGGAATCGCCTTGGACTCCCATCTCCTGGAACAGAGACTACAGATGGACCACCGTGTCATGTCATCAACTGTGAGCACCGAGCCCGTAAATACGGATTCATCTGAAACATCTAAACTTTGTAGGGGCAAAATTAGAATAACCACAAAGTACAGCAGCAGAGGCAAGCGGCAGAAAATAAAAAGGGTACGTCTGCAAAAGTAGCGCATCATCATAATCATAATATCCAGGTTCAAATACGTTTTTACCCCTGCAAATAAGAGGTGTTTTGCTTTTATCCCTAAAATTTTTTTTTTTAAAAAAACAAAGGCAAAAGTCAGCAAAGCCAGCTGGCAGTTCCGGTAGACACGTCAACAAACCACTAACGGAGACTTGACAGAAGGATTAATATCAAACAAAAAAATTTTGCAAAGTGTTTTTTAAAAAAAAAAATTTGTAGGAGGTAAAAGCAAAACACAAAAATGGATTAAATTAATATAAAAAAAAAGACAAGGAAAGAGAAAATAAAAATGGTAATTTGGGTAAAAAAGAGGAGAAAACAGTGGCACAAAGCACGCCTCCGGAAATCCACAACACAATAAAATTATTAAATTAAATTAAATTAAAACATTAAAACCTCACACATTCATTGCTGCTCGCTAAACTCTACTCTACTACTAACCCATATAGTTCATTCATTCTCACCCATTTTTATATTCCTTCATTCGTCTTTCCTCTGTAGCATTGAAAACAGAGGAACCATAGGAAATAGAAAAGAAAAAACAGAGGCAGAGAGTGAGAAAAAAAATACAGAATAAAAGGTTAGAACTTGTAATGGAATCTGAATAACTTCAATGAGAAACACAAATCTGTTGCTGTGTTGTGATTACTGATTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02373.25	JmjC	211	329	1.70E-37
PF02375.20	JmjN	21	54	4.90E-14

Gene family

Gene family	Subfamily
Transcription Factors Family	Jumonji
Epigenetic Regulators	JMJ12

Gene Ontology

GO term	Description	Category
GO:0009737	response to abscisic acid	Biological Process
GO:0051260	protein homooligomerization	Biological Process
GO:0046164	alcohol catabolic process	Biological Process
GO:0072329	monocarboxylic acid catabolic process	Biological Process
GO:0010557	positive regulation of macromolecule biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR013087	Zinc finger C2H2-type
IPR036236	Zinc finger C2H2 superfamily
IPR003349	JmjN domain
IPR003347	JmjC domain

trEMBL

trEMBL term	Description
A0A1S2YA95	_

SwissProt

SwissProt term	Description
REF6_ARATH	Lysine-specific demethylase REF6

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G48430	relative of early flowering 6
Medicago sativa L.	MsG0180005185.01.T01	_
Oryza sativa L.	LOC_Os12g18150.1	ZOS12-04 - C2H2 zinc finger protein, expressed
Cucumis sativus L.	Csa003840	_
Glycyrrhiza uralensis Fisch.	Glyur000762s00020831.1	_
Codonopsis lanceolata	Cl_chr02_09860T	_
Arachis hypogaea L.	AH13G01610.1	Lysine-specific demethylase REF6 like

Expression pattern