Gene detail

Detail information of Am03G015800.1 Annotation

Gene ID	Annotation
Am03G015800.1	RNA-metabolising metallo-beta-lactamase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G015800.1	mRNA	Chr03	44362459	44371627	-

Sequences

CDS:

>Am03G015800.1
ATGTCAATGGCTGCTCTCACCTCTCCTCCCTCCTTCTCTCCTCACTCCCTCTTCTATCACCGCCCAAAACCAACCCGGCTTTGCGTTTCAGTTTCCGCACTCCCAGGCAGTGATGGATCTACTACTCGCAAAAGAAGGAGAAGAATAGAAGGTCCTCGAAAAAGCATGGAAGACTCTGTTCAACGCAGGATGGAGCAATTTTACGAAGGTTCCGATGGTCCACCCTTGCGTGTTCTTCCTATTGGTGGTTTGGGTGAAATTGGGATGAATTGCATGCTTGTAGGCAACCATGACCGTTATATCCTCATTGATGCTGGTGTCATGTTTCCTGACTTTGATGAACTTGGAGTCCAAAAGATAATACCCGATACCACGTTTATAAGAAAATGGAGCCACAAAATTGAAGCTCTTGTTATAACACATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATCCCAGCTTTGGATTCCAACACACCAATTTACGCGTCTTCCTTTACGATGGAGCTTATAAACAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCAAGACTCAAAGTATTCAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCTATCAGGGTGACCCATTCTATTCCCGACTGTTGTGGACTAGTTCTTCGATGTTCCGATGGTACTATTCTGCACACCGGAGACTGGAAGATTGACGAGACACCTCTTGATGGGAAAGTTTTTGATCGAGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTTACATTGATGATGAGTGATTCGACAAATGTTCTCTCACCTGGAAGGACGACCAGTGAATCTGTTGTGGCAGATTCATTATTGAGGCATATTTCAGCTACTAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATCTACATCGCATTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACGTACTTAGAGGCAGCTTGGAAGGATGGAAAGGCTCCATTTGATCCGTCCACTCTGGTAAAAGCAGAGGATATTGATGCTTATGCACCTAAGGATCTGCTTATTGTAACAACAGGCTCTCAAGCAGAGCCACGTGCTGCTTTAAATCTTGCATCATATGGAAGTAGCCATGCTTTGAAACTAACCAAGGAGGATGTTGTTTTGTATTCAGCTAAGGTTATTCCTGGTAATGAGTCTCGTGTGATGGAAATGCTAAACCGCATATCTGAGATTGGATCAACAATAGTTATGGGGAAAAATGAATCTTTGCACACATCTGGACATGCATATCGTGGGGAGTTGGAGGAAGTACTTAGAATAGTGAAGCCACAGCATTTTCTTCCTATACATGGAGAATACCTGTTCCTAAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTAGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCGCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGACGGTGACAAAGCGTTTGGTACATCTAGCGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTGATTAGCATGGAAATATTCCGCCCTAAAAGCTTAGAGATTTTGGCTGAAAACACCCTAAAAGCGAAGATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAAGCTGTTAGATGCACTATACAAAGCTGCTCATGCAACTCTTTCAAGTTGTCCTGTTAATAGTCCACTGTCTCACATGGAAAGAACTGTATCTGAGGTGTTGAGGAAGATGGTAAGAAAGTACAGTGGTAAAAGGCCTGAAGTAATAGCCATTGCCATAGAAAATCCTGGAGCTGTTCTTACTGACGAGATGAACAAAAAATTGTCTGGCAAATCTCATGTTGGTCCTGGAATATCAACATTAAGAAAAGGAGTGGATGGACGTAGAAAGGAAAATCAGTCCACCACACTGCAAATAAGAGATGATGGCATTGATATCGAAGGACAATTAGCCGAGAAAGACACCGCTACAGGTCCAGCTGAGGGCAATTTATCTGATTCAGATGAATTTTGGAAACCATTCACTGTATCATCAATTGAGAAGTCAATCAAGGCTAACAATGGTTATGTTTCACAAAAGGAGCACAAGTCCAATATGAAGAAAGATGATTCTGAAGACATCGATGAAGCCATGTCTGAAGAAACATCTAATGCTGAACCCAAGTCTTCAAAATCAGTTAAGAAAAATAAATGGAAAGCTGAGGAAATTAAGAAGCTGATTGGTTTGCGGAGTGACCTACGTGACAGATTTAAAGTTGTGAAAGGAAGGATGGCTCTATGGGAAGAGATATCTCAGAATTTGTTGGCTGATGGGATCAGCAGAAGTCCTGGACAATGCAAATCTTTGTGGACATCTTTGGTACAGAAATATGAGGAAATCAAGAATGGGAAGGATAGCAAGAGAAGTTGGCAATATCTTGAGGACTTGGAAAGGATAATGTCTACCGACGAAGCATCGGCTACAAAATGA

Protein:

Promoter(3k):

>AM03G015800.1
ACTATAAAAATTGAGTGGACATGTAATCACTTAGTTTTTGTTCTGCTGCAAGATTTAGTATTGTTATCCTTTCCGCAAATGCCCAATAGCCTTGGTGAAATGCTAGATTTGATTTTTAGTATTGTCTTTGACCTTCACTTTTGAGAATAATGTATGTATTGGATATATGCAGTTCCCTTATTATCAATTTGTGGATCGAGATTCTATGTACAAAGTTGGATCATTGTTTTATGCCATCTACTTTATCGTAAGCTTCCCGATGTTTCTAAGGTAAGTTTTTTACTAGCAGTTGTTTGGGTTGCTTCATTCTGTGTTTGGGGAAGTTACAAACCCTATAACAAGAAATGGAAATATGTCATTGTTGTTGAATTTACGTTATTGACAGTAATTCATGCAACTATGTGCAGGATTGACGAGAAACCTGGTAATAAATGGGACTTGCCAAGAGTGGCTGTTGATGCTTTGGGTGCTGCAATGCTGGTCACAATAATTCTTGATTTGTGGCGTATCTTTCTGGGGCCTATTGTTCCAGTCTCAGAAGCAAAACAGTGTTCTCAAACAGGATTACCTTGGTTTTCTGGATACACCAATCTAACATGAGGATTACATTAAAGTGGGAAGAGAATGGTTTCCACTACACACCAATGCAATCAGAAAAAGTTAATTATGTGGAGACTCTGCAGAAGTAACCAAACTTTAACAATCCTTGTACTAATGTTTGCAGTGCCAAATTTTTGATCAGATCGATGTTGTATTTGTAGGCTTTGAGTTTGATGTATCAGGAAGTAGCCAACGCAAGTTACTAAATATTGTCTACTGAAATTAATGACAATTGAATTGCTTAGCCCCTATCCTTGTGCATTATATTTTTCCTATACTCGAGTTAGTGCTTTCCTATATTCCTATGCGCTTAAAATCAGGCATATCATACATGCTTGAAACAGAAAATGATCAGTAAATTAGCTTAAAATGGTTATAAATTAAGCTTTCTGGAGTAAAATGTAACGGAAAGATGTTCTCATTCTATTGTTTGGAAAATGAATATAATGGAATGAGTTATAATTTTTGTTTTCTATATTTACCTTTATTTGGAAAACATTAATATGTCACGACAAAAAAAACATTAATATGTAGAGAGACTTCACAATAGATATAAGGAAGAAATAAGTGTGATGTGTGATAAATAATCAAAAGTATAATAGAGAAACCACTAATAATATTACGAAAAATAATAAAATTTATTAATTTATTTGATTTAAAAGAGAAGCCACTAATAATATTACGAAAAACAATAAAATTTATTAATTTATTTTATTTTGTAAAATAATCTTAAAAGACAATTGTATAATGAAGAGAGAGAGAGAGAGAGAGTATTATATATTATATATCTTTTAATTTTAACTATTTTGTATAATGAACCGATGATTAACTTTGGATTAAAGGATGCAGTGTTGTCTCTATTTGTAGCTTATGTGGAAATGCTTCTGAGACTTCTCAACATCTCTTCCTCGATTTCCCTTTCACCCAACATATTTGAAGCTGACTTGGAGATATCCTGAGTATCCATATTGATACAACCTCTTTTCAGAATATTTTAGCATTGACTTATCATGGCTGGAGTACTTAATTGCAAGATGTTGTCTCTGTTGCTATTGTTAATATTTTATGGGTCATTTGGTATTGCAAGAATCAGGTTAGATTTAGTAATCATGTGATCCTCTTACACTAAGCTATCAATTTAATTCTTTCAAATGCTGCTTTAGCTGGGAATGCTTTTAAATCATCGATGTCTTTCTTTGTTGCTGAGTTTATGATTATCAAGACCTTCAATATCATTGGTAACTATAGAAGCTCTATAAACATCAAAGAGGTTAATTGTATTCCCCTCGCGCCCTACATGATTAAGTGCAATACCGATGGCGCTGCTAAGGGTTGCTCGGGACCTGCCGCTTGTGGTGGTATTTTTAGAGACAAAAGTGCTCCTATTCTTGGTTGCTTTTCTGCCTCCATTGGCAACAGTTATGCTCTTCATGCTGAAATTATTGGGGCTATATTAGCTATAGAGATTGCTTTTGATAAAGGTTGGAGTGTGATTCTCAGTTAGTCGTTTCCGCCTTTTAAGAATTGCAAAATAGTTCTTTGGAAGCTTAGAAATAGATGAAATAATTGCTTATATTTACGAGACAAATGATATTCATTTGCACTCACATTTATAGAGAAAGTAACACTTGTGCTGATAAGCTTGTCGGGCATGGTACTAACACAATTGGTTTTGTATGGTGAGACCTTCCTCCTAGCTTCATTGCTGAGGATTTCTCTAGAAATAGGTTAGGATTGTCTAGCTATAGATTCCGCTGATTTCCTGTTCGATGGTTTCAGTCTCCTTCTAGCCTTTTGTTTTTTGTGTGCTGTAAATGATTGTTGGTGGCTTTGGTGTCGACCTGGTTGGGATGAGAGTCATTATAGTGATGATTTTGTATGTCAATTTTAACTTTCTTTGGACTAGTCCCCCATGTCTTTTGTATCTTTTTTTTTTTTATCAATAAACTGTAGGGTACTCTTTTTTCTTCCTGATGTTTTTTCCCTAATGAGGATTTTGTATCAGAAGGTTTTAATGAGACTTCATGACCATTTCTTTTGCTAAAAATAAATAAATAAATAAATAAATAATTTCTTAACAATAGTTAGTGAGTTGAGCCAAACGGTTACATAGAGACGGACGATTTTGCCACGCAACAACGGTGCAAAGAAAGGAAAGAGGGGGTTTCCTTTCCCACACACACCACACGTGTGCGAGGTAGGCACGTTCCATTTGGGTTGGGTTGGGTGTCCTAATAATGCTGCAGAAATTGATAAGAAAGATATTTTGTGAAGGCTCAACCAATCCATCCAATGAATCTCCCTCCATTTCCCGCTATCAAGCATCCTCAGCAGCAGCAATAGCAGTAGCTTCTTTCTAAGTTGTTGAAGTTGATAGGGTTTGCGTTACTTGCTTGCGCA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13837.9	Myb_DNA-bind_4	769	852	3.30E-15
PF12706.10	Lactamase_B_2	99	235	2.50E-10
PF00753.30	Lactamase_B	89	233	7.10E-10
PF07521.15	RMMBL	429	478	6.80E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0046872	metal ion binding	Molecular Function
GO:0009658	chloroplast organization	Biological Process
GO:0008800	beta-lactamase activity	Molecular Function
GO:0009416	response to light stimulus	Biological Process
GO:0004519	endonuclease activity	Molecular Function

InterPro

InterPro term	Description
IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain
IPR001005	SANT/Myb domain
IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like
IPR042173	Ribonuclease J, domain 2
IPR044822	Myb/SANT-like DNA-binding domain 4
IPR001279	Metallo-beta-lactamase

trEMBL

trEMBL term	Description
G7J5I7	_

SwissProt

SwissProt term	Description
RNJ_ARATH	Ribonuclease J

KEGG

KO	Description	Enzyme
K12574	ribonuclease J	[EC: 3.1.-.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G63420	RNA-metabolising metallo-beta-lactamase family protein
Medicago sativa L.	MsG0380015689.01.T01	_
Oryza sativa L.	LOC_Os02g33610.1	metallo-beta-lactamase, putative, expressed
Cucumis sativus L.	Csa005242	_
Glycyrrhiza uralensis Fisch.	Glyur000361s00013171.1	_
Codonopsis lanceolata	Cl_chr02_10380T	_
Arachis hypogaea L.	AH18G34800.1	Ribonuclease J like

Expression pattern