Gene detail

Detail information of Am03G015400.1 Annotation

Gene ID	Annotation
Am03G015400.1	Glycosyl hydrolase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G015400.1	mRNA	Chr03	42826520	42830941	-

Sequences

CDS:

>Am03G015400.1
ATGGCCATCTCAGCAACTACCTTTACCTTCGTCACCTTCCTTTTTATCACTCTCACTGACCAGTCATTATCTCTGCCGCCACCACCTCCTTTTGCCTGCGATTGGTCGAACCCATCGACCAGATCCTACCCATTCTGCAACCCAAAACTTCCCATCACAGACCGAACCAGAGACCTTGTCTCAAGACTCACATTAGACGAGAAACTCAGTCAACTAGTCAACTCTGCTCCTCCCATTCCTCGTCTCGGCATCCCCGCTTACCAGTGGTGGAGCGAAGCACTGCATGGCGTTGGCAGCGTCGGTCGCGGCATCTTCTTCAATGGCACCATCTCATCAGCTACTAGCTTCCCTCAAGTTATCCTCACCGCAGCTTCCTTCGATCCCCACCTGTGGTACCGTATCGGAAAGGCTATTGGGATTGAAGCAAGAGCAATATACAATAATGGACAAGCAATGGGGATGACATTTTGGGCACCTAATATTAACATATTTAGAGATCCAAGATGGGGAAGAGGACAAGAAACAGCTGGTGAAGATCCTTTGATGACTTCTAATTATGCAGTTTCTTATGTAAGAGGACTTCAAGGGGATTCCTTTGAAGGAGGGAAATTGAGGGGACACCTTTTAGCTTCTGCTTGCTGTAAACATTTTACAGCTTATGATTTGGATAATTGGAAGGGTGTTAGTCGGTTTGTTTTTGATGCTCGTGTGAGTTTGCAAGATTTAGCGGATACTTATCAGCCTCCTTTTAAGAGTTGTGTAGAGGAAGGACGAGCTAGTGGGGTAATGTGTGCTTATAATCGTGTTAATGGAGTTCCAAGTTGTGCTGATTATGGTCTCTTGACTAATACTGTCAGAAAACAATGGGATTTTCACGGGTATATTGCGTCGGATTGTGGAGCAGTGGGGATCATACATGATGAGCAAGGGTATGCAAAATCAGCTGAGGATGCTGTCGCCGACGTTCTTCATGCTGGAATGGATTTGGAATGCGGTACTTACTTAACAGACCATGCTAAATCGGCAGTACTACAGAAAAAACTACTTATATCTCAAATAGACCGTGCCCTTCACAATCTATTTTCTATTAGAATAAGACTAGGCCTATTTGGTGGAAATCCAACCAAACTCCCATTTGGCATGATTGGTCCCAACCATGTATGTTCCAAAGATCACTTGTATCTAGCTCTTGAAGCTGCAAGAAACGGCATTGTCCTTTTAAAAAACACTGCTTCACTTCTTCCACTTCCAAAAACAAGCCCCTCTATTTCCTTAGCACTGATAGGTCCCAATGCTAATGCTTCCCCACTAACTCTATTAGGAAACTATGCTGGCCCTCCTTGTAAATATATGACTATACTACAAGGATTTCAACACTATGTTAAGAACACTGTCTTTCATCCTGGTTGTGATGGTGGACCGAAATGTCCTTCTGCTCAAATAGAACAGGCGGTGGAGGTTGCGAAAAAAGCGGATTATGTGGTGCTGGTTATGGGATTGGATCAAAGTGTAGAGAGGGAAGAACGTGACCGCGTTCACTTAGACTTGCCAGGCAAGCAACTGGAACTCATCAATAGTGTTGCCAAAGCTTCTAAGCGACCGGTTATTTTGGTGCTCCTTAGTGGAGGCCCTATAGATATCAGTTCAGCAAAATATAACAACAAAATTGGAGGTATCTTGTGGGCTGGTTATCCAGGGGAAGTTGGAGGCTTTGCACTTGCACAGATTATCTTTGGTGACCACAATCCAGGAGGAAGATTACCAATTACTTGGTACCCAAAAGATTACATCAAAGTACCAATGACAGACATGAGGATGAGAGCTGATCCCTCAACTGGCTATCCTGGGAGAACTTACCGATTTTACAAGGGTCCAAAAGTGTATGAATTTGGCTATGGACTAAGCTACACAAAATACTCCTACAAGTTTGTTTCTGTCACACATAACAAGCTTCACTTAAATCAATCATCCACTCATTTGATGGTTGAGAATTCAGAAAGCATCAGGTACAAATTAGTTTCGGAGTTGGGCGAAGAAACCTGCCAAAGCACGTTGGTTTCAATCAATGTGGGAGTTAAAAACCATGGAAGCATGGTGGGGAGGCATCCTGTGTTGCTATTTATGAGACCAGGAAAACAGAGAACTGGAAGTCCTATGAAGCAGTTGGTGGGATTTCACAGTGTGTTGCTAGATGCAGGGGAAATGACTCATGTTGGATTTGAGCTAAACCCTTGTGAGCATCTTAGTAGAGCAAATGAGGCTGGTTCAAAGGTTATAGAAGAAGGGTCTCACTTGTTGCTTGTGGGGGACGAAGAATACCCAATAGATATCATTTTGTGA

Protein:

Promoter(3k):

>AM03G015400.1
GAACTAAACGTTGTCCTCATAACCCTTAAGCCGGTTACAAGAAACAACACATAAACTGAACTGATATTTTAGCGTGTCACCGGTCACTTGGCATAATAAGCTTCCGGTGAACCCGTCCCCACTAATCGGCTGGGTCCCTGATGGGGCCTAGGTTCATAGGGCTCATGACTTCCCCTCCCCTAGCACACTAAACTGAAATAGGGTCGTCACCCTAACTGAACTGATGTATATATTTTAATATACCTGAACTGAACTGAACAATGAACTTAACATAACAATAACTTAACTTAACAATAAACTGAACATAATCATGAACTTAACTTAACATGAACTGATCCTAACATAAACTTATTACTAACGTGATCTAATTACTAACTTAGTCTAATTATTAAGTGATCTCTCATGGATTACTAAGGTTCGCTAACTTAACTTATCAATCTTACTAAACCAGTCAGTCCAACACATATATCAATCACAAGGTCATAACATGAAATCAATGGTCAATCACATGAGCATTCACTGCACCTGAACATAATCTAAACATAACCAATCACATGGCACTAATATAACTTGGATTCAATCACAGTCAAACACATGGAATTTCAGTGCTCCCATCCTTGGGGAGACTTGGAGAGTGGATTAGAAGGGACTTGGGACCATTCGGAATAGCTTAGGACATATTTTAAAAGTTGGCATCAGAAGGATACGCACGGTCCGTGCGCTATGGCGCACGACCCGTGCGCGTTTTCAAAACGGCACCATGAGGTTCAGAGTCTCACGCACGACCCGTGCGCCCATACACACGATCCGTGCGTGACTCTCTGTATTTCAGAAAAACTGTTTTCGCGTTTTCTTTTCTATTCCGATCGTTCCCATGTCCATTCCGATTCACATTCAAACTCGATAACACATCAATACAGACATGGAAACCAGTACATTCAGTACAATCAATAATATTCATTCAACAATCAACACACATCAATCAATAATCATGATATGCCAATTCATAAGTTTCAGTCCAACAATTCATCAATCTCATGACTCAAACGATATTTTCGCAAAACGGTTTCGCACCGGAATTTCACAAATTCGCGACTCAATTAAAATGAAAAGGCTGAAAACAATCCTAGTGAGTATTAGAACTCACCTTTTCGTGACGACGATACACCCGACGCCGAAACTTCTCGAACACGAACTAACGGAATCTGCTCCTGCTGTTTCCAGCAACTAAACGCCAATTTGCAACAAGCGTAACTCACTCAAATCTCCACCAATCTTAGCAAAACGAGGGTCTACGGTGAAGGGAATTTTCTCTACTTTCTGATGGAGAAAGATTCACTTGCATGCAACCGGTAGATTGGGAGATATCAACAAAACAAGAGGACTGCTTCGGAACAGTGGCTGACTCTTAACCCGAAAGTTGTGAGCATGATATCTCTCTCATTCCTCAATGAAATCATGCGGTTCTTGTGCCCAAAATGAAGAGATTTGTGTCTAGTTTCCAGAGGGACAAGAATCACGATGATCGGAGGTCAGTACATGGAGATACGAATGAAACACTGAAGGTAGGTAAAACGGGTTTTGCCCAGAATTTTCTGTTGAACCCTTCTTCTCCCTCAAACTCGAATTTGCATGGCTGGGTGAAGTGAGATGATGTTTCAGTGTTTGATATGAGTACCAATAGAAAGGGGAAGGAAAATGGGATGTAGTTCTGGTCTTAGATGAAACATGCATTGAGATTCCATGGAGCTCTCCTCCTCTCTTCTCCCTTCACACCTCTCTCTCTTTTCTCCCCCAATCTCTTTGAGTTTGAGTTTCTGAAACTGAAAGAAGGGGCTGGAGTGTTTCATAGGGTGGGCTGGGTCAGCTGGGTTAAAATACCTTGGGAAAAGACAATAATACCCCCAACTATTAGCTTCCCTCTTATGACTTCTATTGGCTCTAATGCCTAACTTAATGAAGTTAAACTAACTTAACATTTCAGCATACAAGCATGATAAATCATTTAATCACCTATTTCATTTCCTAAAACAATATATCAATTAATCACAAACAATGACAAGTCAATTATTTAAATCACTTTCAATTTATTTCATTTTATTTTTAACAAGCTAATGAATTACCAAAAATAATTAATTGCCAATATAGTTAAAATATTTTTAAAAATAGGGGATGTTACAGGTATCCTGACGTCGGCCCATGATCGGTGTTGTGTACTATGTTTCAAGGAAGATGAATCAGCAGCTCATGTATTTTTGGAGTGTGATGTTACTAAAGAAGTGTGGAGACTTGTGAGTCAATGGATGGGGGTCCCCAGGGCTCAGACCAAGGATGTGGTGGAGAACTTTATGGAATTTGGGAAACTAGTGAAGGGAAAGAAGACGAAAAGAGTCAGACACTTGATTTGGATGGCGGTAACGTAGAACATTTGGAGAACCAGGAACAATATTATGTTTAGAGGGGAGGTGGCTGCGATTCCATCTATTCTTTACAACGTGAAGTTCAGCGCTTGGAGTTGTTGGTTCATGGCTAGGAAGGGCCGAAACTGTGGAGTTACATGGTCGGATTGGTTACATTGCCCGCTGGCTGTTTTCTCTCATTGTAACACTTTAATGGCCTTTGCCTTGTTCGTTCTTTCGGGGGTACTCTTTTTCCTCCTTGGGTCCTTTTCCCATGGGGTTTTGGCCCTTGAAGGTTTTAACGAAGCCCCCTGATTGTAAGGGTTGGTGCACCCCTTGTGCCCTCTTTTAATACTAAATTATTTATCTAAAAAAAAATTTTACATATCATAGAAACCAAACTGAATAAAACATATATTTATAGGGACAAAAAACAAAGTTTTAATTTTAGAGAGACTAAATTTTTTTTTTGACACAAAGATAAACTAATAATTGAGAATCTATGAGTGTAACATCAAGTCTCGAGTCTCTATAATAACCTGTGTCCTGTGGTGGCTGTTCAAGTAGCTCCAATTCCAGCCCAAGAATATCACAATCATTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01915.25	Glyco_hydro_3_C	404	636	3.20E-52
PF00933.24	Glyco_hydro_3	109	358	1.30E-32
PF14310.9	Fn3-like	704	770	1.10E-09

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GH3

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	Cellular Component
GO:0003724	RNA helicase activity	Molecular Function
GO:0031222	arabinan catabolic process	Biological Process
GO:0005524	ATP binding	Molecular Function
GO:0003676	nucleic acid binding	Molecular Function

InterPro

InterPro term	Description
IPR013783	Immunoglobulin-like fold
IPR036962	Glycoside hydrolase, family 3, N-terminal domain superfamily
IPR001764	Glycoside hydrolase, family 3, N-terminal
IPR017853	Glycoside hydrolase superfamily
IPR036881	Glycoside hydrolase family 3 C-terminal domain superfamily
IPR002772	Glycoside hydrolase family 3 C-terminal domain
IPR026891	Fibronectin type III-like domain
IPR044993	Beta-D-xylosidase

trEMBL

trEMBL term	Description
A0A2Z6MMB5	_

SwissProt

SwissProt term	Description
BXL7_ARATH	Probable beta-D-xylosidase 7

KEGG

KO	Description	Enzyme
K15920	xylan 1,4-beta-xylosidase	[EC: 3.2.1.37]
K05349	beta-glucosidase	[EC: 3.2.1.37]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G78060	Glycosyl hydrolase family protein
Medicago sativa L.	MsG0380015645.01.T01	_
Oryza sativa L.	LOC_Os02g51620.1	glycosyl hydrolase family 3 protein, putative, expressed
Cucumis sativus L.	Csa021766	_
Glycyrrhiza uralensis Fisch.	Glyur000332s00014989.1	_
Codonopsis lanceolata	Cl_chr02_63790T	_
Arachis hypogaea L.	AH17G31560.1	Probable beta-D-xylosidase 7 like

Expression pattern