Gene detail

Detail information of Am03G013880.1 Annotation

Gene ID	Annotation
Am03G013880.1	F-box/RNI-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G013880.1	mRNA	Chr03	37848108	37851097	-

Sequences

CDS:

>Am03G013880.1
ATGGTTGGCAAGGATAATCTGAAGACTGAGGACTTAAACTTGTGCTTTGAGAATCTTATGATGGTTGCTGGTGGTGGAAACAGTGGGAAAGGAGGGAACATGAAAACTGGAGTGATCAACGAATGGAAGGATATTCCTGTGGAGCTTTTGATGCAAATCCTGTCCCTTGTGGATGATCAGACGGTTATCACAGCTTCTGGAGTTTGTCGTGGATGGAGAGATGCCGTATTCTTTGGCCTTGCTCGTTTATCACTCTCATGGTGCAACAAGAATTTGAATAACTTGGTCCTATCTCTTGTTCCCAAGTTCTCAAAATTGCAGACACTAATCCTTCGTCAAGATAAGCCTCAACTAGAGGATAATGCTGTTGAGACTATTGCAAATTTCTCCCATGACCTGCAGATTCTAGACCTCAGCAAAAGTTTCAAGCTCACTGATAGGTCACTGTATGCTATAGCTCATGGTTGTCCTGATCTTACAAAACTAAACATCAGTGGTTGTTCAGCATTCAGTGACACTGCTCTGGCTTACCTCGTCAGTTTCTGTAGGAAACTGAAAGTTCTTAATCTCTGTGGATGTGTTGGAGCTGCAACTGATACTGCATTACAGGCTATTGGACACTGCTGCAATCAGTTGCAGTCCTTGAACCTTGGTTGGTGTGATCAAGTTGGTGATGTTGGTGTGATGAGCTTAGCTTATGGGTGTCCTGATCTCAGAACAGCTGACCTGTGTGGCTGTGTCCATATAACAGATGATAGTGTGATTGCTCTGGCAAACAGATGCCCTCACCTGAGGTCTCTTGGACTGTACTTTTGTAAGAACATAACAGACAGGGCAATGTATTCCTTAGCACAAAGCAAAGTGAATAACAAGATGTGGGGATCTGTTAAAGGAAGAAATGAGGAGGATGGCTTAAAGACTTTGAACATTAGCCAATGCACTTCACTCACTCCTTCTGCTGTTCAAGCAGTTTGTGACTCATTCCCTTCTCTTCACACATGCTCAGGAAGGCATTCACTCATCATGAGCGGTTGTCTTAACTTGACATCTGTGCATTGTGCTTGTGCTGGCCATGCACACCGTGCAATCACCAATTTCACTCATCCAGCTCATTAA

Protein:

Promoter(3k):

>AM03G013880.1
GTCGGAAAAAGAAATGTTCAGTATTTCACGATCAAAATAATTGGAACGTTATTGTGATTGATCAAGTAAAAATACTGAATGACTGAAAATAATCTTGAGAGAGTAATAAGGACGGTTTGTATTTGGACTCTTTTGTAAGATGCAGTCTTTTTTTGGTTTGAAATTTTATTAAATGGCTGTCGTAAAATTCCTTATGTGGAGCAATTACAACAATAAATGTTATTAGAAACTTAGTTAAAATTAGTTTTTAGTTGTAACTTTTCACAATTAGTTAGTTAGTTGAAATTTTGTATTTACTTTCACTAGAAAGTGCACTATGTATAGTGACCACCTCTTCATATTGTATTAAGTTTTCAGTTCACAATTTATTTTAAATGAAATTCATATTCTATTCAAAGATAGGGTTTTTAACTCTTAATATGGTATCAAGAGCGCTCTAGCTTCCGCGTTCCACTCTCATCGGTGATTCCTCCATCGTCTTCTAACGAATTTCCCCTTCTATTTCGTGATTCTTGAACAATGGTGTTCATCGTGGTATCATAAGTTTCATTTCAACACTTCTTCTTGCGTGTGTTCAAGAAGTTCATTGAAGTTTCTTTCTCGATCATCCCTCGAGTCAGCTTCACCATCTTTGCTGCTTTTTTGTCTCTTGTTTCTTCTTGGTCCAGCCGTGTAGCTATGGAAGAACTAATGAAACAACAATTTTTCCGAAAGAAGCCATGTTTCGCTTTCTTTATCCCTTCTTGCATGTGTTCAAGAAGTTCATTGAAGTTTATTCCTCGATCATCCCTCGAGCCAACTTCATCATCATTGTTGTGTCTCTGTCTCTTGTTTCTTCCTAGTCGAGCTGTGTAGCTATAGAAGAACGAATGAACCAACAAATGAAATCTTTTTCAACTCATGTATCGAACAATCTAATTTTTTGTTAGAATTGTTGTTCGTTTTTGCAAATTAAAGATTCTGTTCAACATTTGGTTGTGCTTTGTCCATCATCAGCACCACCATGGGAACAGTCTTTTGGATATGTTTGGTACATTTTAGGATCTCTTCTACTAATCTTAGCCCTTTCTCCTTTCCATGGAATTAAAGGTTTGCTATGTTTGATAAGGAGTTCACCGTTTGGTTGTACACTTTGTTTTCTTGTTGGATTTTTGGATTGATTTCTTGGATCCACCTTTTTGTTTGGGTTTTTTTTGAAGACTACCCTATGTTCTTACGTCGATATGTGATTTCTTGCAAGTACTCAGTTGCTGTCAACAAAGTAGCACTATTATTTGGCATTGTGAAGTGAAATTTCATTCTTCTAAGTTTCCTAATGTGTCTACGATGGTTGCTCGATGGATATAATAGCAAAAAAAAGGGATATAGAGAGATAGACTAGCAATATAATGCAAAAGAAGGGATATAGTAACGATAAATAGTTTGTTTTCTTTTTTCAGGAAAGTAACGATACATAGTTCAGATGCGCGGCGATCTTGATAAGTGTAATTGTAGGTCTCTGACGGGGAGGAATCCTCTAACTTTTTGGAGGGAACTTCTCCCTAACTTTGTATCTATTTTTAATACATTCTCTCTCATTTTAATTCCCTTCATTTCCCTCCATTTTTTCTTTTCTCTCTCATAAAAAAAGACTAAAGTTAAGAAAAGGTAGAGATTGAGAATTTAGAGGATCCATTTCCGTCTCTGATGCGACTTTTATCCAAAATTACTTTCATTTCCTGCCATGAAAGGAGGATGGTCGATAGTAATATAATAGTGTGGAGCATAGGGTGGTATCAAATCAACTAATCAAGTGAGTAAGAAGATAACGATTAAAGGCACAAAATCCAAAATAAAAGCAATTGCGTTACAGCAAGCAATACTACTCTAATAGTATCTTGTCTGTCTTGTTATCTTTTGCTTATTGGGATAGAAAATCCAACACGTTATTTCTTCATTAGCGGTTTCGAGTTTGGACAACCAGAAACTTCTACAGTACCTTTTCATCCATTTCCATTTTTATTTATTTCAACTATTATTAATTTTCATTTACTACCAATGACTTGGAAATGGATCAGTTCCCCAAATAAAAATGGATCAACTAATTTTTGTTAACTTTAGATTTTTTTTATGAGAGACAAAAAAATCGAAAGAAATAAGATAATAAGAAAATGTATTAGAAAAAAGAGATAAATATAAAATTAGGAAAAAATTTCCGCCAAAAATTTACTACCGATGACCTCCATTCTCATCAAAGTAGAATACTTTACTTGGGACCCACATAACCTGTCACCTCACGCATACACGTGGCAGGGTAACGTTTCGTGCCCTCTTCTCTCTCTCTCTCTTCTCGTTCCTTCCTTTCTCGTTTTTCTTCACGCTATTTAGGCCCTTCTCTTCACCCCTCACAATTTCAGAGAAGCGCAATAAAGCTTCTCTATTTTCTCTTTTAGATAAAAAAAAACAAAAACAAAGAGGCTCAAAAGAAGGCGAGTTTGCTGGCTTTTTTCCTCTTCCCTCGACCTACTTTCAGTGGTAATGATCACTTCCATAACTACTATTATTTGTTTATATATCATGCCTTTGATTGACCAGAAAAGCAAAGAATTAATTTTTATTTTGCCCAGTTTACATTTTTCAGTTCTTCTCCCTTCTCCCTTCACCCTCACGATTTCAGTTTCATGATTACTTTTTTATGTACCGAGTTTGATTGATTTTTTATCACAAGTCTCATAAGCTGTTGAGCTCTGTTTATTTAATCATGCAAATATGTAATTGATAAACATTTGATGGGTATTTATGTAATGTGCAACATCCACCTTATAAGATTATAAGACCCTTTAATTATTTTTTATATTTATTTTAATTTATGCGTGTTGTGATTATCCTTCTGTTGCTTTCCCTATGCAAATTGCATTTGGGGGTTTGTGGGGATGACTATTTTCTTAAAACCAAGTCTTGGAACTTGCTATGCCTTATCATCAGTTTTTTTTATGACAGCTGGGAAATTTTGAAACTGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF12937.10	F-box-like	43	76	1.30E-07
PF00646.36	F-box	42	76	2.30E-07

Gene family

Gene family	Subfamily
Ubiquitin Family	F-box
Ubiquitin Family	F-box

Gene Ontology

GO term	Description	Category
GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Biological Process
GO:0019005	SCF ubiquitin ligase complex	Cellular Component
GO:0005737	cytoplasm	Cellular Component

InterPro

InterPro term	Description
IPR006553	Leucine-rich repeat, cysteine-containing subtype
IPR032675	Leucine-rich repeat domain superfamily
IPR001611	Leucine-rich repeat
IPR036047	F-box-like domain superfamily
IPR001810	F-box domain

trEMBL

trEMBL term	Description
A0A3Q7K7C5	_

SwissProt

SwissProt term	Description
SKP2A_ARATH	F-box protein SKP2A

KEGG

KO	Description	Enzyme
K03875	F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G21410	F-box/RNI-like superfamily protein
Medicago sativa L.	MsG0380016436.01.T01	_
Oryza sativa L.	LOC_Os05g35110.1	OsFBL22 - F-box domain and LRR containing protein, expressed
Cucumis sativus L.	Csa013217	_
Glycyrrhiza uralensis Fisch.	Glyur000199s00018227.1	_
Codonopsis lanceolata	Cl_chr02_55760T	_
Arachis hypogaea L.	AH17G29290.2	F-box protein SKP2A like

Expression pattern