Gene detail

Detail information of Am03G013740.1 Annotation

Gene ID	Annotation
Am03G013740.1	global transcription factor group A2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G013740.1	mRNA	Chr03	37440442	37448409	-

Sequences

CDS:

>Am03G013740.1
ATGAGTCACCGAGGAATGGACCGCGACGACGAAGAGGATGAGGAGTACGAAGAGGAGCAAGTCGCCGACTTCGACGAGGAGGAAGCGGAGGAGGAACAGGAGGAAGATAGAGGCGGCAAAATCAAGCGGAAAAGGTCTAGCTTCATTGACGACGATGCAGAGGAGGTGGACGAGGACGACGACGAAGAGGAAGAGGATGATGAAGATGAGGATTTTGTCGAACGGGGCCGAGGTAGTCGGGGTCGCCGGCAGCCCAAGAAAAGGCCCGCTTCCAATTTTTTCGATGAGGAGGCTCAGGTCAATACCGATGATGAGGAAGAAGAGGAAGAAGGCGAATACGATTTCATTGATGAGGGTGGAGCTGATCTGCCAGATGAAGATGATGGTCGGAGGCCTCCTTCCCGTCGTATGTTGCCACCTCACCAAGAAGATCATGAAGATCTTGAAGCTATGGCAAGAAGCATTCAGGAAAGATATGGAAGGCGAGTGCAAGATTATGATGAAGAAACTAATGATGTAGATCAACAGGCACTTTTGCCATCTGTAAGAGACCCAAAACTATGGATGGTCAAATGTGCGATTGGTCGGGAACGAGAAACGGCTGTTTGCCTCATGCAAAAGTACATAGACAAGGGGTCTGAATTGCAAATCAGATCAGCCATTGCTCTAGACCATCTCAAAAACTATATATATGTGGAAGCAGATAAAGAAGCTCATGTTAGAGAGGCTTGCAGAGGTCTGCGTAATATATTTGGCCAAAAGATAACCCTTGTTCCAATAAAAGAAATGGCTGATGTGTTGTCAGTTGAAAGCAAAGCTATTGATCTTGCTAGAGATACTTGGGTCAGAATGAAAATCGGGACATATAAGGGGGACCTTGCTAAAGTAGTGGATGTTGACAATGTACGGCAAAGGGTCACCGTGAAACTGATTCCGAGGATAGACTTACAGGCCCTTGCAAACAAATTGGAAGGCAGAGAAGTTGTGAAAAAGAAGGCATTTGTTCCCCCTCCTCGTTTTATGAATGTTGATGAAGCTAGGGAACTACATATACGGGTGGAGCATAGGCGTGATGCCTACGGGGAACGCTTTGATGCTATTGGAGGCATGATGTTCAAAGATGGATTCTTATACAAAACTGTATCGATAAAATCTATTAGTGCTCAGAACATCAAACCTACTTTTGATGAGCTTGAAAAATTTCGTAAACCCGGTGAGAGTGGAGATGGTGATGTGGCCAGTCTGTCAACTTTGTTTGCAAACAGAAAGAAAGGGCATTTTATGAAAGGTGATGCCGTCATTGTCATCAAAGGTGATTTAAAGAACTTGAAGGGATGGGTGGAGAAAGTGGATGAAGATAATGTTCATATAAGACCAGAAATTAAGGGTCTTCCTAAAACTCTTGCAGTGAATGAAAGGGAACTTTGTAAATATTTTGAACCTGGAAACCATGTTAAAGTTGTCTCTGGTGCTCAAGAGGGCGCTACTGGCATGGTTGTGAAGGTGGAGCAGCATGTCCTGATCTTAATATCTGATACTACAAAGGAGGATATCCGTGTGTTTGCAGATGATGTTGTAGAGAGTTCTGAGGTAACCACTGGAGTTACGAAAATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGATAATTTGAGTTTTGGTGTGATAATACGTGTAGAAAGTGAGGCTTTCCAGGTTCTTAAGGGGGTTCCTGACAGACCTGACGTTGTGCTTGTTAGATTAAGAGAGATCAAGTGTAAGATAGAGAAGAAAATAAGTGTGCAGGATAGGTTTAAGAATACAGTATCATCAAAGGATGTTGTGCGGATTGTTGAGGGTCCCTGCAAAGGAAAACAAGGTCCTGTCGAGCATATATATAGAGGAATCTTGTTCATCTTTGATCGCCATCATCTTGAACATGCAGGCTTTATTTGTGCCAAGGCCCAATCATGTGTGGTTGTGGGAGGTTCACGCTCCAATGCCAACAGAAATGGTGGTGATGCCTACTCTAGATTCTCCAGCCTTACAACTCCACCTCGTATTCCACAGTCCCCAAGGAAGTTTAATCGGGGAGGGCCTCCATTTGATTCTGGAGGGAGGCATAGGGGTGGAAGGGGACATGATGGTTTAACTGGTGCAACTGTTAAAGTACGCCTGGGTCCCTTTAAAGGTTACCGTGGCCGTGTTATAGAACTTAAAGGCACGTCAGTCCGTGTTGAATTGGAGTCCCAAATGAGGATTATTACAGTTGACCGCGACCATATATCTGACAATGTGGCTGTTACCCCTCATCGCGATACATCTCGATATGGGATGGGAAGTGAAACCCCAATGCACCCATCTCGAACTCCTCTGCATCCATATATGACTCCAATGAGAGATCCTGGAGCAACTCCTATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTATGCGCCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGATCTTGGGGAGCCAGTCCACAGTACCAGCCAGGAAGCCCTCCTTCCCGGCCATACGAAGCCCCAACTCCTGGTGCTGGTTGGGCTAGCACTCCCGGTGGCAATTATAGCGAAGCTGGAACACCACGGGACAGTTCTGCCTATGCCAATGCGCCAAGCCCATATTTACCATCAACACCAGGTGGGCAGCCTATGACACCAAATTCTGCATCTTATCTTCCTGGCACCCCCGGAGGACAGCCTATGACTCCAGGAACTGGAGGCCTGGATATGATGTCCCCAGTTTTAGGTGGGGACAATGAAGGGCCATGGCTTATGCCGGACATATTGGTCAATGTACACAGGGCTGGAGAGGAGTCTGCCGGAGTTATAAGAGATGTTCTACCGGATGGCTCTTGCCGGGTAGCCCTTGGGTCTAGTGGGAATGGTGAAACAATAACAACCCTTCCCACTGAAATGGAGGCTGTAGTGCCAAGGAAATCGGATAAAATAAAAATAATGGGTGGGGCACTGCGTGGTGCCACAGGAAAGTTGATTGGTGTAGATGGTACTGATGGTATTGTAAAGGTAGATGACACGTTGGATGTGAAGATTTTAGACTTGGTAATTTTGGCAAAATTAGCTCAATCATGA

Protein:

>Am03G013740.1
MSHRGMDRDDEEDEEYEEEQVADFDEEEAEEEQEEDRGGKIKRKRSSFIDDDAEEVDEDDDEEEEDDEDEDFVERGRGSRGRRQPKKRPASNFFDEEAQVNTDDEEEEEEGEYDFIDEGGADLPDEDDGRRPPSRRMLPPHQEDHEDLEAMARSIQERYGRRVQDYDEETNDVDQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACRGLRNIFGQKITLVPIKEMADVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNERELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEDIRVFADDVVESSEVTTGVTKIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPDVVLVRLREIKCKIEKKISVQDRFKNTVSSKDVVRIVEGPCKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQSCVVVGGSRSNANRNGGDAYSRFSSLTTPPRIPQSPRKFNRGGPPFDSGGRHRGGRGHDGLTGATVKVRLGPFKGYRGRVIELKGTSVRVELESQMRIITVDRDHISDNVAVTPHRDTSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGDNEGPWLMPDILVNVHRAGEESAGVIRDVLPDGSCRVALGSSGNGETITTLPTEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQS*

Promoter(3k):

>AM03G013740.1
TCACTTAAATAAATAAAATAATAATAATTGGAAATGAAAGTTGAAAACATGTGAAAGCACAAAGTTAACGAACCTTGTTCATCAGGTTCTGATAGGCCAGGAATTCTCCCTGCAAGAAGACCTTGTTTCACCACAGCCAAACTCACTCCTGGAAAGCCCAACAATGAAAGCCCCGAAGCCAAAACTGTTCTTCTATTCACCAATAAAGAGGAACATTTCACACTTTCTCCGTTGGTTAAATTTGAGACTGAAGATGCTACAGTTCTTGGAATTCCATTTTGAATTGAAGAATAGCAAAGTATTTGTGATGAGGATTGGATATGCATGTGCTGCTGCGGGTTCCTCCAGGAAAGGACACTGGTTGTGGACAAGGCTGTTGCCATGTCCACGATGATTTGTGTGCTTATTATTGGTCTAGGATGGATGGGATGGTAAAGAAAATGAAAAATGAATCAGGCAAGCCCAGAGGAGAAACTGCATAAAATCGATTGAAAGTTTCGTGTAGATGTTGAGGTCCTAAGGCTAAGGTTACCGAGATTAACGATTTTTGTGGACTCGGTGCCTTTGTGGCTCTCTCTCAGTCTGTCTGTCAAGTGTGAATCTCCGATATTTGTTTTTCTTATTGAGTTCCCAAATTTAGGTTTTGGTAAAGTTTTTTAACGGACCACATCAACAATAAAATTCACTAACAGTAGACTAACCGGGGACTAACATGTCTCCAGTTTGTAAATGTCAGGGGATAATTTTGCATTAATTAATCCCGGGACCAAATTGGTCATCAAAATTTTTGTAAGGAAGAAGGAAATTGAGTATTCTCTCCCAATGTTTTAAAATTCGAACCGGTGACCGACTCGGTGAAGGTATCGGGTCATTGGGCCAATGGTCGGATCGAGGAGTCGACATTTGAACTGTATGACCAAAATCGGGATCGGATGACTCGGACTCGGTCTCTATTTCGAGAATTTTCAATACCTATATAGTATATAATAAAATTCGTCTATGTAAAATTAATAACTATGTTTATTTTATATCTACTAAAATATAAAAAATTCCCAAATTTTCAGAATCTATATATTTCATACTTGTAAAACTTAATTTGCTAAAATTACACACCATGCTTATTTTATTTTTATTTGCTTGGTATATATTAAATAAATTTTAAAAGTTCATATCATGCTTCAATAAATATTTAGAACAAATTTCATAAGTTAACAACTTAATATTAAATAAATCTTTAAAAAAATACTTAATATTAAATAAGTTTGTTGAAACATAATATTAATATTACAAGCTAATGCTATGAGGATGAGCGTACTTGACTTTTAGGAAAAGAGGTACCAATTGTATATATTTGAAATAAATAATATCTCAATAAGATTGGTAGCCTCATGGTAGCGCTCAACATTTGCTTTCAACAGGTCAGGGGTTCAAACCCCACTAATGGCATTTTGTTGAGGGTTTTTCTTGAACGGAACATGGAGGAGAATGAGATACAAAAGCAAGACGTATGTCAATGGGAAACATACTTACATAGATGGCAATCACTAGTGGGGCCTGCGTTCGCGCGACCCCTCCCAATTACAGTTCAAAGATTTGATAAAAATAAAAAAAATAAAAAAAAACAAAATGCACAACCCGGTCCGGTTCGAGCCGGGTCACCGGTTTTTCCAAAAACCGGCCGAGTCACACCGGTTCCCACCGGTTTGCTGCATGGCCGATCCAAAACCTTGACCGACTCGGTTACCTCCCCCGGTTCGACCGGTCCGACCGGTCGGGCCGAGTCTGTTTTTAAAACACTGTTCTCTCCAATTGGATTTTTTTTTCCGTAAACAACCATTTGTTTCTTTCATTTTAGTTTTTGTTGTCGCGACACCATTGGCATTGTCTAATGTTAAAACACTCCGGTTTGCATCCCCAATTTCAGCAATGTGGAGACTTTGGTTCCCGATCGTGTGATAAATTTTTTTTGACTCACAATCGTGTGATAATGTTTGTAGTACAAAAAAATCCCTCTATTTTTGGTATTCTAGCGGAACCCGGCCCAAAAACTGAGTCAAACATTATCACACAATTGTCGGCCTAGTCTAGTTTAATTTTTAATAAAGGAAGCCAAAAAAACAGTTGAAAAAGCATAAAAAAGCGAGTCCTATCTTGTCCATGGGCCAACTCAGGAAGCCAAAATGGCCAAGTTATTTTTTTATCTCTGTTTAGCGAACACAACCATTCCAAAACTCTGGGCCATCAGGCCAGACCATAGTGTTTGGCCAAAATTGACACCTCTACCTTTTGAGACTAATTTGACCCACATTTTCATTTTCTAAGGGACTAAATTAGTAGTTTTATTTCTCAAAGACTAAATTGGCCTCCAATTTTTTTGGTTGGGGTATTTTCTCTTTAAAAGTCATTTCACTTATCATACAAATCCGTGTTGTGGGAAATGCACCAACCGTTCAACCAGAAACGAGCCAATTTGGTAGTTGGATCAACGTTAATTGAACTGCAATTCGACCAAACCGGATTGAATCACAATTGATTTACTTCGAACCGCGAATTGAACAGGGTTGAACTACTCAAAATGATTTTTTTAGTTTTTTATTTACCTTTTTCAAAAATTGAATATTTATTTAATTATTTATTTATTAGTTATCCCATTATAATTGAGACGAGTAAACTCATAAACAATGACTAGAGTCTTGCAGGTTCAAAATATTGATAGAAATGCTTTAGCCAATTCGATTGGGGGAAAAACGAGCAAATTCATCGTCTCTTGTCCAAAATTCAGAGAGATATTAGGGCTACAGAAAGAAGCTGTGAAACGAGAAGCCACATCTCCGTTTTACAGTTCATACCCAGCCATTTATCTATCTCAACAATTGACCTAATTTATCACTCAATCAATTTTGCGGCCTCTTTTGGGATTGCCGCTAGTATAAATCTCGCGTAGGCTGCGGGGGCACGCATAAGCACTAGCACTCGTATCAAACGTCTAGGGTTTGCAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00467.32	KOW	481	506	1.70E-29
PF03439.16	Spt5-NGN	186	267	5.20E-27
PF11942.11	Spt5_N	93	180	1.10E-10

Gene family

Gene family	Subfamily
Epigenetic Regulators	GTA2

Gene Ontology

GO term	Description	Category
GO:0032784	regulation of DNA-templated transcription elongation	Biological Process
GO:0005840	ribosome	Cellular Component
GO:0003729	mRNA binding	Molecular Function
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process
GO:0006412	translation	Biological Process

InterPro

InterPro term	Description
IPR008991	Translation protein SH3-like domain superfamily
IPR017071	Transcription elongation factor Spt5, eukaryote
IPR039659	Transcription elongation factor SPT5
IPR041980	Spt5, KOW domain repeat 6
IPR041978	Spt5, KOW domain repeat 5
IPR041977	Spt5, KOW domain repeat 4
IPR041976	Spt5, KOW domain repeat 3
IPR041975	Spt5, KOW domain repeat 2
IPR041973	Spt5, KOW domain repeat 1
IPR022581	Spt5 transcription elongation factor, N-terminal
IPR005825	Ribosomal protein L24/L26, conserved site
IPR014722	Ribosomal protein L2, domain 2
IPR006645	NusG-like, N-terminal
IPR036735	NusG, N-terminal domain superfamily
IPR039385	NGN domain, eukaryotic
IPR005100	NGN domain
IPR005824	KOW

trEMBL

trEMBL term	Description
A0A1S2YBZ9	_

SwissProt

SwissProt term	Description
SPT51_ARATH	Putative transcription elongation factor SPT5 homolog 1

KEGG

KO	Description	Enzyme
K15172	transcription elongation factor SPT5

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G08350	global transcription factor group A2
Medicago sativa L.	MsG0380016457.01.T01	_
Oryza sativa L.	LOC_Os06g10620.1	transcription elongation factor SPT5 homolog 1, putative, expressed
Cucumis sativus L.	Csa019097	_
Glycyrrhiza uralensis Fisch.	Glyur003456s00036216.1	_
Codonopsis lanceolata	Cl_chr03_01940T	_
Arachis hypogaea L.	AH08G05170.1	Putative transcription elongation factor SPT5 homolog 1 like

Expression pattern