Gene detail

Detail information of Am03G013030.1 Annotation

Gene ID	Annotation
Am03G013030.1	CLP protease regulatory subunit X

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G013030.1	mRNA	Chr03	35318582	35324491	+

Sequences

CDS:

>Am03G013030.1
ATGGCTGCCGCTGCGTTTCGATCCAAGCCTTCAAGTTACAAAGAAACAGCGAACATGGCGTTGAGGTACTTCACTTTCAACTACATGCAAGCCGGTAATCCACCACGCTCACCTTTTACCAACTTCACTTCCTTCAAACCCCTTTCTCTCCGCGGCGATTTTACTCAATCCCAAAACCCTACTCATTTCCCCAATCCCAACCCTAACCTCGCTTCCGATGATAAAATATCCCACAACAAACTTCTCATTGCTTCCTCGGGGGACCCTCCTGAAGTCTGGTCTGGTGATGGCCTTGTTGTTCGCTTCGGAAATTCCGGTTACGACACCTCCGGCGGCGGTGGTGGAGGTGGCGGCGGAGGAGGTAGTGGTGCTGGAGGTGCTGGAGATTCCTCCGATTCGAAGGATGGGTGCTGGGGTGGGTCTAATTTGGGTGGTGGGTTCCCAACGCCCAAGGAACTATGTAAGGGACTTGATAAATTCGTAATTGGACAAGAGAGGGCTAAGAAGGTTCTTTCTGTGGCAGTTTATAATCACTATCAGAGAATATTTCATGAATCTTCATCCAAGTCCAAGTGGCCTGCAGGAGAGTCAAGTAATGATGGTAAAGCCGAGGTAGTTGATGATGATAGAGTTGAACTTGAGAAAAGCAATATCCTTCTAATGGGCCCAACAGGATCAGGGAAGACGTTACTTGCCAAAACCTTGGCTCGGTTTGTAAATGTTCCCTTTGTTATCGCCGATGCAACTACACTCACTCAGGCTGGTTATGTTGGAGAAGATGTGGAGTCCATATTATACAAGCTCCTCACGGCTGCAGATTATAATGTCGCAGCTGCACAGCAAGGCATAGTTTACATTGATGAAGTTGATAAGATTACCAAAAAGGCTGAGAGCCTTAATATCAGTAGAGATGTCTCTGGTGAAGGTGTTCAGCAGGCATTACTGAAGATGCTTGAGGGAACGGTTGTCAATGTTCCTGAAAAGGGAGCCAGGAAGCATCCCAGAGGTGACAATATTCAGATTGACACAAAGAATATACTTTTTATTTGTGGAGGAGCCTTTGTTGACTTGGAGAAAACGATCTCGGAAAGGCGTCAAGATTCCTCTATTGGATTTGGAGCACCTGTACGTGCAAAGATGAGGTCTGGCAGTGTCACAGATGCTTCTATTGCATCATCATTATTAGGAACTGTAGAAAGTAGTGATCTTATTGCATATGGTTTGATACCTGAATTTGTTGGACGGTTTCCTGTTCTTGTCAGTCTGACAGCTTTAACTGAAAATCAACTCATTCAGGTCCTCACAGAACCGAAAAATGCTCTAGGGAAGCAATACAAGATGATGTTCCAAATGAATGGAGTAAAGCTACATTTTACCGAGAACGCTCTAAAATCAATTGCTAAAAAAGCAATATCTAAAAATACCGGGGCTCGGGGCCTAAGAGCAATATTGGAGAGTGTTTTGGTAGATGCCATGTATGAGATTCCCGATATCAGAACAGGTGATGATGTTATAGATGCTGTTATTGTTGATGAAGAGTCTGTTGGAAGTGAGGGGCGTGGGAGAGGGGCTAAAATCCTTTATGGTAAGGGTGCATTGGATCGGTATCTTTCCGAGCAGAAAACTGATACAGAGACCACGGAGGCTTCAGGTGGAGATCATGAAGCAGAGACAGAACTTCCTTCCATTGTTGCCAGCATGTAA

Protein:

Promoter(3k):

>AM03G013030.1
AGCATGTAGCTCATCCATTTCTAGTCTGCTGGAAGGTACATATTCTCATTCAGATTTCTCGAGTTGGAAGGTAAAATTTGGACAAAGAAAAAGGAAGCGCGTTGTTTTTTGAAGCTAGAGTCCTGCCTTCAGTTAAGGCTTCACTTTTTCTTCTTTTCTGTTGTCAAAAAAATTCAGATTGGCCTTCAAGACATTGGTATCAGAATCAGATTTACCCGAAGGTATGCATGATTACCCTTCCAGAAAAGACAAAAAGGGTAGGACAGCGGTTTTCTTAGTTCCTTGTACATCAATTAGCTCGTTATACTCTTTCTGTAGTGAGTGTGTTTGCAGGATGTGAATGTTGTACATCTCTGTTAAGCATTTTATTGTGCTTGTAGTTTTATAAATTTTCATATGACCTTTGTTCTTCATAGAAATCTCCATTCTTCTTTCAGTATTTAGAAGGCACCATCCTTTTTCTCCGCAGGGAGTCGCTGGATAGTTTAATCGTTAATGATGTCTAAATCAATGTTTTGATTAGAATGGATGAATTTATTTTACCATAAAATAAAAAGAGAATATAAATTTATTGAAATACAAACTCATAATACAAGTAATAGTGAATGGGCTGGGTAAATTTTCAACTGGATTACTTTTTCCACCCACGTTTTTTCTAATAAACCCCTGTTTTAATTCTTCTAACCTCTGCTTAAAATTATTATTATTTTCCGTAAAATGCTCATTTCTAATACATAAAATGTGTTCGAGAGCTTAATTGTAGGAGTATTTATTTATACATCTTGAAAGTGCGAGTCTAGAATGCATAAATGTGTTTCATAAAAAAATGCATAAATGTGTTAGGAAATTAACTTTCGTCTTTCAGGATATATCATTTTTGTTTTCAAAACTGTTTCTTGATAGTAAAAATAGTTGGCAAAATATCTACCGACGTCCCTTAACTTATTTTTAAATAACGAATTGGTCCCTTAATTTTTTTTTGTAACAATTAAGTCTCTTAAGTTTTAAAAATGTGTTGTTTCCCTTTTTAACGTTTTGGTTTTAACTCCGTTAATCAGTCTGTTAGTTGACTGTTTGACTGCTGAGTTGGCATCACACGTAGGTTAAGTTATTACTGTGTCATAAGACATGTCATTTTTAATTATTTTTTAGATTGAAATGTCATTTTTAATTTAATTTACATTACAAACAAAAAAAAATATCAGTTTGGGGTTTAGGTTCTTCATCTTCAACCTCTCGCTAAGTGAACAGACGCATCCATCCTAAATCCATGACCAGACCATCACATCCTCCTCTCATCTTCCCCAATCTTCATCCATGTTGTTTTTAGGCTTAATTACAGTTTTGGTCCCCCTATTATGACCAACTCACGATTTTGGTCCCCAAAGTTTTAATTTGACGATTTTGATCCCCCTATTTTCCCAATTTGTAAAATCAAGGTCCCCCTTCTTAATTTGGTCAAAATTAAAACTGTATTTTGACTTTTTTTCCTACGTGGCAGTCCACGTGGCACTGTTCCTCTTCAACCCCTCCCCCCACGTGGACTGCCACGTAGGAAAAAAGTTAAAATACAGTTTTAATTTTGACCAAATTAAGAAGGGGGACCTTGATTTTACAAATTGAGAAAATAGGGGGATCAAAATCGTCAAATTAAAACTTTGGGGACCAAAATCGTGAGTTGGTCATAATAAGGGGACCAAAACTGTAATTAAGCCTTGTTTTTATTTTAGTTTTTATTGAAAAAAAAATCAGAAAGGTACTGTTCCTAAAAAACCCAGGAATTATGATTTGGGAATTATTTTCAAACCATCAATTGGAAATCCAACCCAGAATCTGGAAATCCATGTCTCTCTTCTCTTTTCATCTTCAATCCAGAATCGCTTTTCGGTTTAAATACTGCATATCCTGGAACTGCACTGGACAAAGTCGAAGTGGGCATGATGAATCTTGCCCCTTCCGATATAATAGGACAAAACTACTTGATTTGTCTGGAGTGTAGAGCTGTCAATTTGGGCCCGGCCCAATGGGCCGGCCCAGTGGCCCGTTTTTTGGTTGGGCCTGTCTCTAAAAATAGAGGCCCAAAAAGCATCGGTATCTTTTTTGGCCCGGCCCGATTGGCTCAATGATTTTATTGGGACTGGCCGGGTCAGCCCATGGGCTTTTGGCCGACCCGATTGGCCCGATTTATTTTTGTTTCTTGTTTTTTTTTATTTTTTAAATACTGTTTGTTTTATTTTTAGATTGGCCCTTTGTTAAAAATTTTGCCCAACAAGCAAAAAAAACGTTATTATTAGTCATAGAGGCCCAAAGTCAAACACATATAGTTACTGTACCACAGTCCACACACAAAACACATTACGCAATTCTACTTTCACACTATATTTTTAGTAGTGCATGTTACTACTGTGTGCTATATTTTTTAATATTTGGTATGAGTAAAAAAAAGAGTAAATATTTGATCATAGAATTTTTTTATTTATACTTAGTATTGTAGTTACCCCAGTTTAGCAAATATCACAATATATATATATATATATATATATATATATATATATATATATATATATATATATTGTAATAAAATGGTCAGCCAAGATACACACGTTTACACGTGGTGAAATGGGTTAAACTGAACACAATATTGAGGCGGTTAGGGAGAGAGAGGCGTGGCGTGGCGTCGTATTTTGGACACCAACCATTGTAATTGTAATAACAATATCAAAGCGAGAGATAATTGGGTAGAGAGAAAGAGACTGAGAAAAATAAAAGTGTTCCCGCAATCTTGATTCTCTCTGAACTTGAAGGATAACCAAAGTTCACATGATAACAGATTCACTCCACAGTTCACATGACATCGTCTTATAAGTTCTTCAACTGACAATCAATGTATTTTTCATCATCCACTGATTATCTCTCTTCAATTCTCTGAATAATAACTTTTCTCCGTTTTAATCGACAACACAGCAACAACAACAACAATCAACCTACCTACCTCCTTCG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF07724.17	AAA_2	214	418	2.80E-45
PF00004.32	AAA	218	350	5.20E-15
PF10431.12	ClpB_D2-small	425	494	2.30E-14

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0051082	unfolded protein binding	Molecular Function
GO:0051603	proteolysis involved in protein catabolic process	Biological Process
GO:0016887	ATP hydrolysis activity	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0008233	peptidase activity	Molecular Function

InterPro

InterPro term	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR004487	Clp protease, ATP-binding subunit ClpX
IPR019489	Clp ATPase, C-terminal
IPR003959	ATPase, AAA-type, core
IPR003593	AAA+ ATPase domain

trEMBL

trEMBL term	Description
A0A1S2YD82	_

SwissProt

SwissProt term	Description
CLPX1_ARATH	CLP protease regulatory subunit CLPX1, mitochondrial

KEGG

KO	Description	Enzyme
K03544	ATP-dependent Clp protease ATP-binding subunit ClpX

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G53350	CLP protease regulatory subunit X
Medicago sativa L.	MsG0680034235.01.T01	_
Oryza sativa L.	LOC_Os02g35630.1	AAA family ATPase, putative, expressed
Cucumis sativus L.	Csa015810	_
Glycyrrhiza uralensis Fisch.	Glyur003220s00037517.1	_
Codonopsis lanceolata	Cl_chr03_52630T	_
Arachis hypogaea L.	AH17G27720.1	CLP protease regulatory subunit CLPX1, mitochondrial like

Expression pattern