Gene detail

Detail information of Am03G012250.1 Annotation

Gene ID	Annotation
Am03G012250.1	plastid transcriptionally active 15

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G012250.1	mRNA	Chr03	33113687	33115860	-

Sequences

CDS:

>Am03G012250.1
ATGGCGCTAGCACTTACTCTTTACTCAAATCGACCATGTTCATGTTCTTCTTCAATAACGTTTCATCCATACCCACTGATAAACCCTTCACATTCCGTTCAACTTCAACCCTACCTCCGCTCACCCTCAACCTCTTATCCCCACCTTCAAACTCAACCTTCCTTCTCACTCATCAAATCACAACCACCGAACCAGGAGTGTTCCCATTTCCGTTTCCGACGCTCCATTCATGCGTTCTTCCGTTGCCGCTGCGGTAGCCACACAGCATATGTCGACTCTGCTGAATTCGGGATGCTTTTCTCTTTGTTTCAAGAAATTGGGATCGACTTTGAAGAAACCAAAGTTCTCTTGCATAATGTTCCTGAACTTACCTCCATATCAGTGGATTCATTGCGTGCTCGGCTTCTTTCTTTACAGTCTCTTGGGTTAGATTTTGTTATCATGAATCAATTGGTCGTGGAGCGCCCAACTGTGCTAACAGCTATGGAAATTGAACCCTTGTTGAGCTTTTTGAGAGATGAATTACAAGGACAGATTGAGCCATCAAAGTTGAAGCGTCTTTTATCTGCTAATGAACCAAAAGTATTGGCAAGTTTTCCTCAGAAGGTTCAACTGCTTGTAGAGCGTGGAGTTCCCGTTGACAAGGTTGTTCGGGTGCTCAACAAAGTGAATTTGTCTAAGGCATTGTGTCTGAGATCATTGGATGAAATTGAAAAAATCATAGCTTTCTTAGAACCCTTTGGTGGTATTGGTTTGATTACTAGGCACCCTGCAATACTCAACCAGGATTTGGATAATCAGCTGGTTCCAAGAATCAGAGTTCTGACCCAGCTTAGTGGAGGAGATGAGGATGGTACTGGGAAAGTGCTGCAAAGGTTTCCCCTTATCCTGAATTATAGTGTGGAACATGTAGAGGAACATGTACAGTTCCTCAGGTCTTTTGCAGGCCTAGATGACCAACAAATTTTTAGGATAATATTAGTTTTTCCAGCAATCTTTACAAGTAGCAGAGAGAGGAAACTGCGTCCCAGGATACAACTTCTCAAGGAATGTGGGTTAGACTCCGGCGATATATTCAAATTCTTGATCAAAGCACCCGTGTTTTTGAGTATATCATTCCGCGAGAACCTTGCCTATAAGCTTGTGTTGCTGGTCAAGATTGGATATAAATATAGGACGAAGGACTTGGCAATGGCGATTGGGTCTTCTACTAGGATAAGCTGTGAGAACATGCAAAAGGTTATGAGTCTATTCTTGAGTTATGGGCTTTCATGTGAAGACATTTTTGCTATGAGCAAGAAGCATCCACAGATACTGCAGTATAATCATGCTTCTCTAGAGAAAAAGATGACGTACTTGATAGAGGAGATGAACCGTGACATTCAGGAGTTGTTAGATTTTCCTGCATTTCTTGGTTACAAGTTTGATGACAGAATTAAGCATAGGTATGAAATAAAGAAGGGTATAAGGGGGGAACAGATGTCTATCAATAAGCTTTTAACTGTTTCAAGTGAGACTTTCACTGGTAAACGAAAAAAGACGTCTGTTGTAAGATCTGAATTGGAATAA

Protein:

Promoter(3k):

>AM03G012250.1
CTACGTTAACACAATCAAATTATACTAACAACGAATAGTGTTTTCTTGTCGAGACTCAAACTAAATATTACAAAAAAAAATAAAATTTTTTTTATTCAGCAAACATGCAATATGAGGTGGCTTGAATGATTATTGAGATTGGAATGTGGATGATTAAGAGTTGTTGTATGAGTTATAATTATCCCTTTTAATATAAAAAAAATTAATTGAGTCGTTATCTTTAATATTATTTTGGAAAATACAGGTTGCATAGTCGATTTTTCTAAATTTCTGTGCTATTTGGAAACAATACTCACTTTTGAATGGTATATTATTCACTAGGATTTCAAATTTTGTTAGAGCATTGTTTTCGGAGACTAAGACTACTATGGCATAGACCGTTGAGTACGTTAAAGCTTCAGGAGTTCACGGTCACTATAGATCTTGTTATTATTATATTTTTTTGACACAAAAACGCTTAATGCATTTCATTCATGATAATTGTTTCACTACAGGTTGGCTTGAACTCTAAAATATTGAGCCGAACATAAAACCTCGACACCCTTGCAAGAAATAGATTTGGTTGAACTCTAAAATATTTCGCCTTTGGGCAATCAAAAAATAGATGTCATTCGTTCTCTCCAGCACCTGTGCAAAGAGGGCACATAGTTTCACGGTTAACTATTTTCTTCCTTAGATTAGAGCTAACCGACAACACTCCTCTCACAAATTTTGTTATTTTTTTTGTAAACACCTAGATTATTATTGAAAATTTTCTTTAGATTTATAACTTGTCATTTTCAGAATTTTTTTATAAAACACCATTACGAATTACGAAAGATTTCTTTTTTTTTTACAAGAATAAACTCATTGCATTTCATTAATCAGAATAGTCTCAATACAGGTAGGAATCAAATCAAAAACATGAGAACTAGCATATAATCTTGATGCCCGAGCTAGATTATGAGCGGCAAGATTTGCTTGTCTCCGAACATAGCGAACCTGAAAGCTAGGAAAATTAATTAAACGATTATGACAACTTGACACAATAGCACCAAACTCGGTATTCGGTAATGAGTTTAACTTCAAGCCATTTACAATTGAGACACAGTCTAGTTCTATGGAAACAGAAGTCAACCCCAAAACCTCCAACCAAAGTAACGAGTGCCAAAGGCCAATTGCCTCCGCCTCCTGTGGTATAGGAACGCCGGTAAACCACATTGTTTTGCCTTTGTAAAAACTGCCGGTAGAAAAACGAATGCACACGCCTATGCCATATTTATTTTCATCGGTAAATAACGCAGCATCAACATTGCATTTATAGGAACCTGGGGACGGTTTCTGCCACCGAGACAGCTCCTCCTGCTGTTGAACCGAAACAGTAGCTGCTGAATTGTTTTTCTGCCGCACCCACAACCACTCGCGTAGAGAATCGCGAGCTCGTTGAACAACCTGCGTAGCTGGCTGAAGCACTCCATCCCAAACTTTATCGTTACGTCACGCCAAAGCCCCCAAATACACATCACGAAGTTGTTCTTTCTATCCCAGTAAGTGCCTGCAGTAAATTAAAAAGACATTCACGCTTAGTTGCTGCAGTTAGCATGACTGTCCGAACAGTGTTTAATAAACCAGCCTCCTGCCACACCTCTGCTACCTTCGCACAGTCGAGAAACGCGTGCTACTCAGTCTCCTCTTGTTGTTCACACATAGGACATGCGCTATTGCCATCAACCCGACGCTTAACAAGGTTGTTGCGTGTTGGCAAACAGCCGCTTGCGAGTCTCCACAGCAGCAGCTTGATTTTCGGTTGAATATTTGCTTTCCAAATAGACATCCACGCACCTTCAATTCTCTGATTTCTGCTGTCAATAAATTCCTCCATGAGTACATAATATACTGAACGGACCGAGTAACAACCTGACCGACTACGCCACCAACAAAGTCTATCTTCTTCTAAGTTGCTGAATATAAGCATTGATTTAATTAACATTGCCTCATTAGCATCAAACAATTGGTCTATCAGAGTGTAATTCCAGCCACTGTTATTATTATTCCAAAAATCCTTTACCCGCAAGCTCTCTAAACCTTGTACAATGGGTGATCTTACAAAACAATCGCTCCTACCCTTCAGCCACGGATCTTTCCAAACCGAAATATTCTCACCATTTCCCATCGTCCATCGTGCTCCCAACTTAACAACCACCCGAGAAGTGAAGATACTACACCAAACATAACTGGGATTGTGGCCCTAGCAAGCCCCCATAAAGTCACCATTAGGAAAATATTTTGCTTTAAACACTCTACTAACTATAGTATCTGCGCGAGTTGCAATATTCCACGCCTGCTTCCCTAGCATTGCCAAGTTGAAACCATGATGGTGCCGGAAACCCATACCACCAAATTCTTTCCTTACCGTAAGCTTCTCCCAACTCAACCAATGAATACCTCTTCTTGTGCCTCTATTCGAACCCCACCAAAACGAATTCATCATTTTTTCAAGCTCGTCACCCAAGGTAGATGGAAGCATGAAAGTACTCATACAATAAGTGGGAATTGACTGAGCCACAGACTTCAAAAGTACCTCTCTCCCTGCTTTTGACAAGTGTTTACCGGACCAATGTTGAAGTCTCCTCCAAATTCTGACGAAAGATTTCTTTTATTTATTATAAATTTTCACTAATTTTCAATGAATAAGACCAACTATAACAAAAGTGTAACCCAAAGCGTGTGGTTTAGCAGTTGGGGCTGAACCTCCCTTAACCAAGGGGCGGGGGTTCGATCCCTGCCTTGAGTACGGAGCACGTTAAAACTCTGGACCAGCTGTCTTGTCCCTCGAGGCACCTACAATGAGCGAGTGATTAGTCACTGCTGTCCGTGCGGTGGTTACCCGGTTTACCCAAAAAAATTATAACAAAAGTGTAACACATTTGCACATTAATTTCCACCGGTGACCACTCCACACACCCAATCCAATAGTCTACAAAAAGCCGTACGTGCAGCGTATCATCTCTTGTTGCAAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02536.17	mTERF	101	342	5.20E-49
PF02536.17	mTERF	309	393	5.20E-49
PF02536.17	mTERF	345	507	5.20E-49

Gene family

Gene family	Subfamily
Transcription Factors Family	mTERF

Gene Ontology

GO term	Description	Category
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0004252	serine-type endopeptidase activity	Molecular Function
GO:0006390	mitochondrial transcription	Biological Process
GO:0015979	photosynthesis	Biological Process
GO:0006508	proteolysis	Biological Process

InterPro

InterPro term	Description
IPR003690	Transcription termination factor, mitochondrial/chloroplastic
IPR038538	MTERF superfamily, mitochondrial/chloroplastic

trEMBL

trEMBL term	Description
A0A1S2YCB8	_

SwissProt

SwissProt term	Description
MTEF8_ARATH	Transcription termination factor MTERF8, chloroplastic

KEGG

KO	Description	Enzyme
K15031	mitochondrial transcription termination factor family protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G54180	plastid transcriptionally active 15
Medicago sativa L.	MsG0380016658.01.T01	_
Oryza sativa L.	LOC_Os08g40430.1	mTERF domain containing protein, expressed
Cucumis sativus L.	Csa021283	_
Glycyrrhiza uralensis Fisch.	Glyur000015s00000790.1	_
Codonopsis lanceolata	Cl_chr02_51290T	_
Arachis hypogaea L.	AH10G29900.1	Uncharacterized protein (Fragment) like

Expression pattern