Gene detail

Detail information of Am03G010820.1 Annotation

Gene ID	Annotation
Am03G010820.1	Transducin/WD40 repeat-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G010820.1	mRNA	Chr03	29464933	29469129	-

Sequences

CDS:

>Am03G010820.1
ATGCTGATCTCTGATGAAGGAGATAATGATCTGTTCTTTGATTCTGTGGATTGTTTGTCACCTAAACAAGATTCTCTTTTGACAAAACAAGAACATGGTTATGAGATTTGGGCGAATGAGCCTCTTAGTGTGAAGGAAAGAAGGGAAAGATTTCTGAAGGGGATGGGTTTGGTTGATGCTTCTTCAAACTTTTGTTCTAGTGAAGACAATATTATGTCCTGTGATTTCTCATCAGTAGTTGAATTGGGGATTAAGGAGAGGGTCAGGGATTTCAGTGGAACTGTCTCAAATGAACAAGTTCCTCAGAAGTTGGTTCTCTCAGGAAGAGAAGCAACTTCCGAGGCCCGAGTTTCGTTTGAACTTAGCAGCTGCAACAATGATAAACCAGATGGAAGTGTACAAGAGCTTAGACATAGAGAAGCTGAGGCTCTAGAAGAATATCAGGCTATTGATATAGGCAAAAAGAAAAAGAATAAGTGGTGGAAGCAATTTGTAAACAGAGGGAAACTCAGATCAAAATTGAATTTAGGGAGAAATAAAACGCGGCGGATAACTGTAAGGCACAATAAAAAGAGGTGGAAGGAGTTCAGCGCGATGTATATTGGACAAGACATTAGAGCACATGAAGGGTTAATTTGGACTATGAAATTTAGTCCTAATGGTCAGTATCTAGCTACTGGAGGTGAAGATGGCGTTATACGCATATGGCGTGTGTCATCACTGAATACTTCTAGTATTTGCTTTGCTGCAGAAGACAGTGCATTTAGTAAAGTGAAATACAATACTTGTTCTCCAATGAAACACTCAAGTCGATCCCTCATTGTTCTTCCAAATAAGATTCTCAAAATTGAGGAATCTCCCTTGCAAATGTTATATGGTCATTCCAGTGATGTTATGGATTTGGCTTGGTCTAATTCAGATATCCTCCTTTCCTCTTCCATGGATAAAACTGTTCGCATGTGGAAAATTGGTTGCGATCAATGTTTAAGAGTTTTCCGTCACAGCAATTATGTAACATGCATTCAATTCAACCCAGTTGATGGAAATTACTTCATCAGTGGCTCCATAGATGGTAAAGTTCGAATATGGGGAGTACATGAAGAGCGAGTTGTTGACTGGGCAGACATACGCGATGTCATAAGTGCCGTAAGTTACCAGCCAGATGGAAAGGGGTTCGTAGTTGGTTCGCTCTCTGGCACTTGCCGGTTTTATGTTGCTTCAGGCAAACATTTCGTGCTTGAGGCGCAGATTTGTGTCAATGGAAAGAAGAGAACATCTGGCAACAAGATTACTGGCATTCAGTTTTCCCAGAAAAACCATCAGAGAGTTATGATCACATCAGAAGATTCCAAAGTTAGAATATTGGAAGGCAATGAATTTGTTCAGACATATAAAGGCCTTCCAAAATCAGGAAGTCAGATGTCTGGTTCATTCACATCAAGTGGAAAACATATAGTATCAGTCGGAGGTGATTCTCGTGTGTATATTTGGAACTTTAACGACTCGGGAAATGCTTCTTCCAAACAAAAGAAATCCGATAATTCCTGCGAGTACTTTTCCTCCGAGGGTGTTACTGTTGCAATACCTTGGTCAGGCCCGAGTGCAGAACGCAGTTGTTCTCGCGACGATTTTTCCAACTATTCAGTGGAAAAGCAATGCCAATTAGAGACTTCTCCTTGTTGTAGAGAGTCCGAGCGTTTTTCGTTTGGTAGTTGGTTCTCCATTGATGGTTCATGCCGAGGTTCTATGACATGGCCTGAGGAGAAGCTTCCCAGCTGGGATTTACCTCTTGCGGAAATTGAATTCGATCACGGGGAGCTTTGTCTCAAAGATCCAAGGTATGACAATTGTGTACCAGAAACATGGGGACTATCAATTGTTGCAGCTGGTTGTGATGGAACCATCAAGACAGTTCACAACTTTGGATTTCCTGTTAGGCTTTAG

Protein:

Promoter(3k):

>AM03G010820.1
CTTATACATGGGCTTTCTTTATGTTGGGAGTTGGGCTACATAAAGATTATGTGTTATTCAGACTCATTGCACACCTTGAGGCTTATAGACAATGGCGATTCAGTTTATCATTCACATGGTAACGAGATTGATCTTCTTAGGCAGCTTTTGGATCGTAATTGAGAGATCAAAATTCATCATGTTTTCCGTGAAGCAAACTTTTGAGCAGATTTTTTGGCGAAACTTGCCACCACGGATATGTCGTCGTTTGTTTTGCTGGATGCTCCACCGCCAGATATGAGACGATTGCTGGAATTTGATAAGTCACTATTATCCAAACAAATATGACCTACAAATCATTATTGTCAAAATTTTTTTTTGCTGGTGTTTTAATTTACAGTTTTTATAACTAAAAATTGTCGTGAATTTAGTGTATGTTTGGTTGCACGGTGAGGATAATTGAGTTTGCCAGAATTGAGTTTAGTTAAAAGTGAGTTTAAGGTAACGTGATTTTTGTTTGGATACATTTACCGAAAAGTGATTTTCACCAACTAAGGTAACCGAAGTAGTATTAAATTAGCATAATAATATTAAATATAAATTGTCTTAAAAAAATACTAAATATAAATTATCAAATATTTGTCATTAAATTGAAGAGTGCTAATAAACTAGTATTTAGTATTTAAGAGTAGCGCAGAAGCACAAATTCTAGTTACAAAAAAAATAATAAATATAAATTATCAAATAGTTGTCATCCCGCACTCATCTTCTTCGCAACATCAGTTGCAGAAAACGGGTTATGAACAACCCACGGCAGATTCGATTCGATCTCTCAACTAAGACGCTGAAATAGTCTGATTTTAGAGGGTTTAAATCGCGAAACAACATGGAGAAGAAGCCCCAAAAAAATTTTGTGTATCATCTCCTCTCTGTTCACAAGGATGAGTTGTGCAAAACAGTGAGAAATCAAGGTTGCAGCTGAAAGAGGGAACGATGGTGATGAGAGAATTTATGAAGGACAAATCAGAGAACTCACATGTTGGATCATGTTGAACACGAATCAGGTTGAACGCAGAAGCTAGGATTTGTTGCTTCAAAGCTGTTGTGAGTTTCGAACTTGAATTGCATTGCCGCCACCGCGATGGGAAACAACCAAACAGGAGAAAAGCGCTTCTATGGGTGTAAACGTGAGTTGTGAGGTTGCAAACGTGCAACCAAACATACACTTAATATGAAACAAAGAGAGTATTTAACTACTTTCTTAATCTACGTGAAATGATTTAAATCGACATTTAATATGGAAGAGAGGGAGCATTTTAAAAGATGACACTTTAGTCCTGTAAAATGAGTAGGTGTGAGATTTTCCTTCATGTAATTGTATTCCCAAATCCCACCACAAAAGGACATTTTCAATGTGATTGATTTGTTTGCTTGGGTTAAATGCCAACTAAGCCTATGCTATGATCCTACTACTACTACCAAGAAACTCCCAAGAGAAAACCAGAGGTAGCTAGCAGGTAGCACCATTGAATTCATTAAATGCAGAAGCAAAACATTACACTGAAACACGGAGCCCAAGAAATTAAAAATCTGAAACTGCATTGCAGTGTAAGAGAGTGGGTGTATAATGTTTTGCTGTATTAAGGAGCCCTACGATGCTTCAAAGTGGACACCTAGCTTTCTTAGCCCTCTAGCATTTCGACTCATCGCTTTCTCTAGCAAGTGTAAAAGGGCATTTCTCTAGCCCCGGTACTACTTCTTCTGCCTATCACTTCTAGTACCACAATTAATTACTGCCACTACCACTAATTTTCGATTTTAATTTTAATTTTGTGTAACGGCCATTAATTAATGCGCCTTACTAGTAAAATACAAGGCTATGACTCATCAAATCAATCATAATCATAGTGTATCTGGTCGTGAGGTTTTTTAATTTTAATAATTAATACTATCATTAATTCCTACCACGCTGTATTATTTATTCACTTCCCTTAACGAACAAACACTAGCCAAACTACAAAAGCGAAAAATTAAAATTACAACATGATCTGTTGTTGAATTGTCCGAATTTTAATCCCAGGTTTTTATTTAGACAGCGCTGTCTGTAATTTTTTTTGAGAATCTTATTGATACGGACATGTTATTCTTATGTGTCACTGATTGATGATTATTTAAGATTGATTAGTAGTAGTGATTAAATTAATGAGTGAAATTCTCTCTCTCTCTTTCTTTTTGGTTAGTTATTATGAGACAGAGGGAGAAAGCGATAGGTGGGGATTACTACTAGAACTAGAACTGGAACTACAATTACAAGAAGAAAGAAAAGAAAGGATGATGATGAAGAGGTTATAGAGTGGTGGTTGTTGCAGTAGTGGTGTGTCTTGTTTCCTGAGCCGCGCCGCTCGTGTTTGTCGCTCATGCGTGCGGCCTTCTTTCTTTCTACAATCCCCATATCTCGAGGCTTGGTTTCTTTTCTTGGCGACACGACACAATCTTCAATCCTTTTTTTCTTCCTTTCCTTCCTCCGCCAATTTCTCTCGTGTCTTGAACCTTGCCATTCTCACTTTTGATTCACTGCACTTTGTGTTATGAACCCTTGACTTGCTTCTGTAGCCACAATTACTGGAAAGGTCGGTGCTGCTGTTTTGAAATTTTTTGTGTCTTTGCTTCATTTTCAAGTTCAACTCTCTCACACCGGTACTATTCTTTTGTTTTTTTTTTAATTTATTTTTGTGTTTATGATTTTGTATTTGGTTATTCTATTGGGGTTTGGGGTAATAGTTTATTATTCTTAGTATTAACTATTGATATCCTGGTGATGAGGGTTTCCAACATGCAAACAACTCTTGTCATTGGTTCTTTTCTGGGGCTGCTTCTTAGTTCCTCGTACTTGGTCCCTGCTAACATTTTTTATTCCAATGAGGGAGAGGGTTTGTTCATATTTAAGGTTTTGTGAGGGGAAAAGTTTCGAAAAAGGGGCATTTTTTTCATGTGGGACTTTTGTATCTAACTACATAAGCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	205	236	4.60E-30
PF00400.35	WD40	286	322	4.60E-30
PF00400.35	WD40	327	363	4.60E-30

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0033862	UMP kinase activity	Molecular Function
GO:0044210	'de novo' CTP biosynthetic process	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0046940	nucleoside monophosphate phosphorylation	Biological Process

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR001680	WD40 repeat
IPR040324	WD repeat-containing protein WDR44/Dgr2
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
A0A8B8JW10	_

SwissProt

SwissProt term	Description
YF48_SCHPO	Uncharacterized WD repeat-containing protein C3H5.08c

KEGG

KO	Description	Enzyme
K20241	WD repeat-containing protein 44

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G24320	Transducin/WD40 repeat-like superfamily protein
Medicago sativa L.	MsG0380016552.01.T01	_
Oryza sativa L.	LOC_Os04g34080.1	WD-40 repeat family protein, putative, expressed
Cucumis sativus L.	Csa018899	_
Glycyrrhiza uralensis Fisch.	Glyur001419s00035735.1	_
Codonopsis lanceolata	Cl_chr07_30990T	_
Arachis hypogaea L.	AH10G18650.4	Uncharacterized WD repeat-containing protein C3H5.08c like

Expression pattern