Gene detail

Detail information of Am03G009980.1 Annotation

Gene ID	Annotation
Am03G009980.1	Small GTP-binding protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am03G009980.1	mRNA	Chr03	27089157	27098949	+

Sequences

CDS:

>Am03G009980.1
ATGGCCGCGGAAATTTGTGGCGGGTCTCTGCTCTTATCCGTTAAAACTCAACAGCAACAGCAATTCCTCCTCCATTCTCAACGAACTACAACCACCGCTTCCACTTTCCACTCATTCAAACCTCGCTTTTCTTTTCGCTCTTCTAATGCCTCCACCTTTCGCCGCCGCGGCTCCTCCGTCTTCTGCCAGGTTGCCAACACCGACACACTCTCCGACTTCGACTCCGTCTCCAAAGCCGGCCAGGACCGTCTCTCTAAGGTGCCGGTGTCAAATATAAGGAACTTCAGCATAATTGCTCATATTGACCATGGCAAATCCACGTTGGCCGATAAGTTGCTTCAGGTCACCGGCACTGTGCCCCAGCGAGATATGAAGGAGCAGTTTCTCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGGCAGCTCGAATGCGGTATGTGTTTGAAAATCAACCTTACTGCTTAAATCTAATAGATACTCCCGGGCACGTCGACTTCTCGTACGAGGTTTCTCGATCACTTGCTGCATGTGAGGGTGCTCTCCTTGTAGTAGATGCTTCTCAGGGGGTTGAAGCACAAACACTAGCTAATGTTTATTTGGCTTTGGAGAACAACCTAGAAATTATCCCTGTTTTGAACAAAATAGATCTTCCAGGTGCAGAACCAGATCGGGTAATCAAGGAGATTGAAGAGGTTATAGGTCTAGATTGTAGCAACGCCATTCTCTGCTCTGCAAAGGAAGGAATAGGTATAATTGATATTCTCAATGCAATTGTTGCAAGAATTCCCCCACCTGCTGATACAGTTGGAAGGCCATTGAGGGCTTTAATATTTGATAGTTACTATGATCCATATAGAGGTGTTATTGTATACTTTCGAGTTGTAGATGGGACTATAAAGAAAGGTGACAGAGTTTATTTTATGGCTAGTGGTAAGGATTATTATGCTGATGAAGTTGGAGTTTTGTCTCCCAATCAACTTCAAGTTAAAGAGCTTTTTGCTGGTGAGGTGGGCTATCTATCTGCATCAATAAGAACAGTAGCTGATGCCAGAGTGGGTGACACTATTACCCACCATGACAGAAAGGCGGATAACTCACTCCCTGGATATCAGGAAGCCACTCCTATGGTGTTCTGTGGCTTGTTTCCTGTTGATGCTGACCAATTTCCTGACCTACGAGATGCACTTGAGAAGCTTCAACTCAATGATGCTGCATTGAAGTTTGAACCCGAGTCTTCAAGTGCTATGGGATTTGGCTTTAGATGTGGGTTTCTAGGCCTTCTCCACATGGAAATTGTTCAGGAGAGACTTGAGAGAGAATACAATTTGAGCCTGATAACTACTGCTCCAAGTGTTGTATACAGAGTGAACTGTGTAAATGGTGATACTGTTGAATGCTCAAACCCATCTTTACTTCCTGAGCCTGGAAAAAGGAAATCAATTGAAGAGCCACTTGTTAAGATTGAGTTGCTTACACCAAAAGACTACATTGGTTCACTTATGGAACTAGCACAAGAAAGAAGAGGGCGGTTCAAAGAAATGAAATTTATCACTGAAATTAGGGCATCAATCACCTATGAATTACCACTAGCTGAGATGGTTGGTGATTTTTTTGACCAGTTAAAGTCAAGAAGTAAGGGTTATGCTAGTATGGAGTATAACTTTATCGGGTACACAGAAAGTGATTTAATTAAACTCGACATACTGATAAATGGTGATTGTGTGGAGCCATTGGCGACAATTGTGCACAAAGATAAGGCATATTCCGTGGGAAGGGCTTTGACTCTAAAGTTGAAGGAGCTCATACCGCGACAAATGTTTAAAGTACCAATCCAAGCATGCATGGGAGCTAAAGTGATTGCTAGTGAAACTATATCTGCAATAAGGAAGGATGTATTAGCCAAGTGCTACGGAGGAGACATAACGAGAAAGAAAAAATTGCTCAAGAAACAGGCGGAAGGAAAGAAAAGAATGAAGTCTATCGGTAAAGTTGATGTGCCTCAAGAAGCTTTTATGGCGGTTTTGAAACTTGAAAAGGAGGTGCTATGA

Protein:

Promoter(3k):

>AM03G009980.1
CGAGTCTGATGATGACTTGTTTTAGTATTATGTTGTTATTTGCTGGTTTGGACATGTTTAGAATTTGGATTGTTATTGCTGGTTTGAAGTTGTTTAGGATTTGGATATTTGGTATTGTTGGTTAGTTTGGATGGATTTTATTTGAGTATTCTCAAAAATTTGGATATTTGGTATTGTTGGTTAGTTTTTATATATTGGTACTAGTTTGGATGGATTTTATTTGAGTATTCTCAAAATTGTGCTGCATTTGATATATAGTTATTAAAAAAAACAGGTTTTCAAATTTGGACACGTGGCATAAAATAAAGCAGTTTTTTTATAAAAAAATTAAATTAGCGACGGATTTGCCCTCACTAAAATTTGTCGCTAATTAGCGACGGATTTGCCCTCAGTAATTTCCCTCGCTAATTAGCGAGGGAAAATCCGTCGCTAAAATCCCTCGCTAAAATTCCGTCGCTAAGATAAAAAATTCCGTCGCTAAATATTAGCGACGCCCTTTTTAGCGACGGAAAAATTCTGCCGCTAATTCCCTCGGTAAACCACTTTAGCGACGGATTTTTGAGGTTTAGCGAAGGAAATTTCAGTCGCCTATCCTGCTTTTTTTGTAGTGAATGAAATCCTTAAATCGATTTCCCCCAAAACAAAATCAAAATCGAAGCTGTTGGAAAACTATTTCATTTTCGATTTCGTTGTTTTCCATCGATTTGGTTTCGATGTTTTCGATTTCGTTTATGTTTTCTAGCGATTTCTGTTGGAAAACCAGTTCATCGTTTCTGTTTACAGTGTTTCCGATTTAAATGGTTCTGAAATTATTTCTTCCATGAAACCTGTTCATCGTTTCTGTTGAAGAGGATGATGAAATTTTAATGATAATTAATTAAAAAAATTGTATGATTAGTGAAATTATTCTAGGTGGCATGCCAACTCAGCAGTCAAATAGTCAAATAAGAGACCGTTTAACGGTCTTAGTGTTTAAACGTTAAATAGGACAACGGTGCAACGGTTTTTAAAGTTAAGGTACTTGTTCCCATTCAGACCGACCGGTATATACAGGTGCTCAGTCTCCACTCAAGCCGCTTGGATAAAGGAGGATTTCCCTGTATGACCAACCAATCGGTCGTAGATATCTCGTCTTCGTTCCCCCAAATATGGAATGAACCAATCAATATCCCTGATCTCCTTCTCATTTGTCTATAACGGTCAACTCGACCATCAAATATACTTATTACTATTAATGAGTCTTGTACTATAAATACACGGCCTTGAAGCCAATGAAAGGATCCTGAATCCATTATTCATCACAGAGTGATTAGCGCCTCATCAAAAATATGATTATGAAAGGCATTTTGAGTTTTGACTTTTTTGCATTTGAAACTTCGTTTTGAATCACAATTAAACGTTGTGAGATCAAATTTCTCAATTGCATAAATCTACATTCTAGAATTTAAATTTTAGTAGTCTTTTAATTCTTTACAATCCTAAATGTAACTTTTTTTTATTGTAAAACTGATTTTTTTAGCTTATAAAAAAATGATTTAAAAAAAATTTCTTCACGTAAAAAAACCTTCTGAAATGTAAAAAAAGTATTTTTTTTTAAACTAGCTTGGGGGTTTTATTGTTGGCCTTCCCAATCCCGTAACAAGGTTCAAATTTATGTTCGTTATCATTAAATGTAAATTGTACTTGCATTGAAGTGGAGGAACCAACTCTTTAGCAAGCTAGAGTTTTGGTCAGTGGGTGAACTGCCTTCCTCTGCGTGAGGAAGTCTCTTAAATAGAGTTTTCCCAACATCTTGATTTTGGACCTTATGGCTGAATCCATTATTCATCACAGAGTGATTGGCGCCTCGTCATTAAAGGCGCCTAAGTTAAGCCTGTCTTAGGAGGACGAGCTTAGTCTCCATCAAGGGAGGGTCTGGACCTCATTGGTTGGGTAGGATGGATCAAGGCTACTAGTACCCTTTAACGTGTGAGTTGTGAATCCAACGCTACTAGGCCCTTTAATGGGCGAATTAGCGATGTTGGTACACGACGAGTTAGCCCAATATTGACTCGGAAGGGTGACTTAGTACACAACCCTTCATAGGAGGTTTGGTTCTTCCGGTGTACCTCCCCCATGGGCGACTTTGCTGTTCCAGTACACAACCCCTCGTGGGGAACTTAACTGTTCCAGTACACAACCCCTCAAAGGCGACTTAGCTGTTCCAGTACTCAGTCCTCCATGTGCGACTTAACTATTCCAGTAAACAATGGCGACTTGGTTGTTCCAGTAAACTGCCCTCTATGACCTATTTAGCTGTTCTAGTACATAAATTTTGCCCTGCTTCCTCTACATCTCTATCATATGCAGAGTTCGACTATGTGAGGGGTGGTGTCGGGGAAGGGGCGATTGGGGGAAGCCAAGGGAAGGGGGTAATGCACAAAAGAAAAAGATATGAGCAGAGGCGAACCTACCCTCGAGTGAGGGGGTCAAAGCGCACACCATCAATTCCTCTCAGACAAATTTTTGCACTCGAACCTACCCTCTACAAAAAAATTGAACACCTTGAGATTTTTTTTTGCACTCGAGCCCCTAATTTTGCATTCAATCCACACTCAGACAATCACTCACATTAATTCCTCTCCCTCTCGTGTGCATAGGGGACAAATAAAAGTCATGTAATTTATTTTTTAAATTTTTTTATTTTCCCGTCTCGGGTCCTAGATGTACCTCTGATATGAGAGTGAGGAAAGTTCCATAAGATATAGTTTTAAGCCAAGGTTTTTTAGGGGGGTGGGTGGATAAGCAAAACGGGTAGGGTAAAAAAAGGGTTGCAGAAGAAAGCTTCACAAATGAAATGGTTAGCCGATATGATGAGCCCAAATTGATATGCCATCCAGGTAGGCCCAATCTAACAGTGGGTCCCCCCCACTGCGAGACACTCACAAAATGAACTGAAGCCTTGTGTTCCTTTCGCACCCCGCACACCCCGCACCAAGGTGTCGTAGAGTCACAATTTTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00009.30	GTP_EFTU	91	268	8.90E-54
PF06421.15	LepA_C	575	681	5.40E-48
PF00679.27	EFG_C	486	572	1.80E-21
PF03144.28	GTP_EFTU_D2	292	362	7.40E-11

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005759	mitochondrial matrix	Cellular Component
GO:0005743	mitochondrial inner membrane	Cellular Component
GO:0006412	translation	Biological Process
GO:0003746	translation elongation factor activity	Molecular Function
GO:0004523	RNA-DNA hybrid ribonuclease activity	Molecular Function

InterPro

InterPro term	Description
IPR031157	Tr-type G domain, conserved site
IPR000795	Translational (tr)-type GTP-binding domain
IPR009000	Translation protein, beta-barrel domain superfamily
IPR027518	Translation factor GUF1 homologue, organellar chromatophore
IPR004161	Translation elongation factor EFTu-like, domain 2
IPR005225	Small GTP-binding protein domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR038363	LepA, C-terminal domain superfamily
IPR013842	GTP-binding protein LepA, C-terminal
IPR000640	Elongation factor EFG, domain V-like
IPR035654	Elongation factor 4, domain IV
IPR006297	Elongation factor 4
IPR035647	EF-G domain III/V-like

trEMBL

trEMBL term	Description
A0A1S2YCX7	_

SwissProt

SwissProt term	Description
GUFP_VITVI	Translation factor GUF1 homolog, chloroplastic

KEGG

KO	Description	Enzyme
K21594	translation factor GUF1, mitochondrial	[EC: 3.6.5.-]
K03596	GTP-binding protein LepA	[EC: 3.6.5.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G08650	Small GTP-binding protein
Medicago sativa L.	MsG0380016889.01.T01	_
Oryza sativa L.	LOC_Os02g06300.1	GTP-binding protein lepA, putative, expressed
Cucumis sativus L.	Csa018930	_
Glycyrrhiza uralensis Fisch.	Glyur001089s00021507.1	_
Codonopsis lanceolata	Cl_chr03_55900T	_
Arachis hypogaea L.	AH08G28180.1	Translation factor GUF1 homolog, chloroplastic like

Expression pattern